EY736012

Overview
NameEY736012
Unique NameEY736012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 294.664 bits (753), Expect = 4.408e-79
Identity = 149/193 (77.20%), Postives = 162/193 (83.94%), Query Frame = 2
Query:   53 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLY 616
            MATST+   S+F G+ + L P  NEL      NGGR+SMR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NGVKFGEAVWFKAG+QIF EGGLDYLGNP+L+HAQSILAIWACQVVLMGAVEGYR+ GGPLGE  D LY
Sbjct:    1 MATSTIQ-QSAFAGQTL-LKPQ-NELVRKVGGNGGRVSMRRTIKSAPES--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLY 188          
BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 2.839e-78
Identity = 128/176 (72.73%), Postives = 137/176 (77.84%), Query Frame = 2
Query:   89 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLY 616
            + K   L P  + L      +M K  +KS  S S      RVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIH R AM  ALGC+FPELL+  G  FGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIW  +V+LMGAVEGYRIA GPLGEVTDPLY
Sbjct:   20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTC--DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLY 193          

HSP 2 Score: 67.3958 bits (163), Expect = 2.839e-78
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 3
Query:  639 LGVADDPEAFAELRVNEIKNGRLAMFSMFGFSGQASVTGKGPVKKLADPLGDLAN 803
            LG+A+D EAFAEL+V E+KNGRLAMFSMFGF  QA V+ K  ++ LAD LG   N
Sbjct:  200 LGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVN 254          
BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 8.220e-78
Identity = 112/147 (76.19%), Postives = 124/147 (84.35%), Query Frame = 2
Query:  179 SSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLY 616
            S+G  WYGPDR K+LGPFS   P+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH RWA+LGALG + PELL+   GVKFGE VWFKAGAQIFSEGGLDYLG+P+LIHAQ+I+A  A QVVLMG +EGYR+ GGP GE  DPLY
Sbjct:   34 SAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLY 180          

HSP 2 Score: 78.9518 bits (193), Expect = 8.220e-78
Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = 3
Query:  639 LGVADDPEAFAELRVNEIKNGRLAMFSMFGFSGQASVTGKGPVKKLADPLGD 794
            LG+ADDP+ FAEL+V EIKNGRLAMFS FGF  QA VTGKGP++ LAD L D
Sbjct:  188 LGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLAD 239          
BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 8.221e-78
Identity = 114/158 (72.15%), Postives = 132/158 (83.54%), Query Frame = 2
Query:  155 RKTGSKSV---SSGSPWYGPDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLY 616
            +KT +K+    SSG  +YGP+R K+LGP+S    P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAMLGALGC  PELLA++G KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQ+I+A  A QV+LMG +EGYR+ GGP GE  DPLY
Sbjct:   20 KKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLY 177          

HSP 2 Score: 75.0998 bits (183), Expect = 8.221e-78
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 3
Query:  639 LGVADDPEAFAELRVNEIKNGRLAMFSMFGFSGQASVTGKGPVKKLADPLGD 794
            LG+ADDP+ FAEL+V EIKNGRLA FSMFGF  QA VTGKGPV+ L D L +
Sbjct:  185 LGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLAN 236          
BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 1.821e-74
Identity = 120/200 (60.00%), Postives = 142/200 (71.00%), Query Frame = 2
Query:   53 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSP-WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----------GPLGEVTDPL 613
            MA++ MA +S + V K   L+  G   S      +    +  ++ G+  WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L +  GV+F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+   QV+LMG VEG+RI G           P G+  DPL
Sbjct:    1 MASTIMAAASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPL 200          

HSP 2 Score: 77.0258 bits (188), Expect = 1.821e-74
Identity = 42/68 (61.76%), Postives = 48/68 (70.59%), Query Frame = 3
Query:  639 LGVADDPEAFAELRVNEIKNGRLAMFSMFGFSGQASVTGKGPVKKLADPLGD-LANTMPGLPHQLGPG 839
            LG+ADDP  FAEL+V EIKNGRLAMFSMFGF  QA VTGKGP++ L D L D +AN       +  PG
Sbjct:  200 LGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          
BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 5.268e-74
Identity = 114/186 (61.29%), Postives = 138/186 (74.19%), Query Frame = 2
Query:   56 ATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVTD 607
            +++T+  ++ F+G+  N  P  + ++ G         ++   S   WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L +   V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+   QVVLMG VEG+RI G P +GE  D
Sbjct:    9 SSTTVVKATPFLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND 186          

HSP 2 Score: 75.0998 bits (183), Expect = 5.268e-74
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = 3
Query:  639 LGVADDPEAFAELRVNEIKNGRLAMFSMFGFSGQASVTGKGPVKKLADPL 788
            LG+ADDP  FAEL+V EIKNGRLAMFSMFGF  QA VTGKGP++ L D L
Sbjct:  197 LGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 246          
BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 7.442e-67
Identity = 98/140 (70.00%), Postives = 115/140 (82.14%), Query Frame = 2
Query:  194 WYGPDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTD 607
            +YGPDR K+LGPFS  + P YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH RWA+LGALG + PELL++  GV+FGE VWFKAGAQIF++GGL+YLGN SLIHAQSI+A  A QVVLMG  E YR  GG  G + D
Sbjct:   33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDD 172          

HSP 2 Score: 75.485 bits (184), Expect = 7.442e-67
Identity = 37/52 (71.15%), Postives = 41/52 (78.85%), Query Frame = 3
Query:  639 LGVADDPEAFAELRVNEIKNGRLAMFSMFGFSGQASVTGKGPVKKLADPLGD 794
            LG+ADDP+ FAEL+V EIKNGRLAMFS  GF  QA VTGKGPV+ L D L D
Sbjct:  185 LGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLAD 236          
BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.632e-64
Identity = 101/155 (65.16%), Postives = 116/155 (74.84%), Query Frame = 2
Query:  158 KTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGEA-VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLY 616
            K  SKS SS + +YGPD          + P   TGEFPGDYGWDTAGLSADPETF + RELE+IH R  +LGALG V PELLA  +G+KFG+A +WFKAGA IF +GGL+YLGNPSLIHAQ+I+A  A QVVLMG VEGYR+ GGP GE  DPLY
Sbjct:   45 KAVSKSSSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLY 198          

HSP 2 Score: 72.4034 bits (176), Expect = 9.632e-64
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 3
Query:  639 LGVADDPEAFAELRVNEIKNGRLAMFSMFGFSGQASVTGKGPVKKLADPLGDLA 800
            LG+ADDP+ FAEL+V EIKNGRLAMF+  GF  QA VTGKGP++ L D L + A
Sbjct:  206 LGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPA 259          
BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.099e-49
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 2
Query:  395 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLY 616
            ELL +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG +EGYR+ GGPLGE  DPLY
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLY 74          

HSP 2 Score: 78.1814 bits (191), Expect = 1.099e-49
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 3
Query:  639 LGVADDPEAFAELRVNEIKNGRLAMFSMFGFSGQASVTGKGPVKKLADPLGD 794
            LG+ADDPEA AEL+V EIKNGRLAMFSMFGF  QA VTGKGP++ L D L D
Sbjct:   82 LGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLAD 133          
BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.817e-38
Identity = 75/170 (44.12%), Postives = 88/170 (51.76%), Query Frame = 2
Query:  167 SKSVSSGSP----WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGG--------------PLGEVTDP 610
            SK+VS  S     WYGPDR  +L        E P YL GE  GDYG+D  GL   PE FAK +  E+IH RWAMLGA G + PE L + G   G EAVWFK GA +     L+Y G    I    +LA+ A +VVL+G  E YRI  G              PLG   DP
Sbjct:   49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-EVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDP 215          

HSP 2 Score: 65.0846 bits (157), Expect = 5.817e-38
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 3
Query:  639 LGVADDPEAFAELRVNEIKNGRLAMFSMFGFSGQASVTGKGPVKKLADPLGD 794
            LG+A DPE  A L+V EIKNGRLAMF+M GF  QA VTG+GPV+ LA  L D
Sbjct:  209 LGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSD 260          
The following BLAST results are available for this feature:
BLAST of EY736012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB21_SILPR4.408e-7977.20Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2_MALDO2.839e-7872.73Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_CHLMO8.220e-7876.19Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE8.221e-7872.15Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_HORVU1.821e-7460.00Chlorophyll a-b binding protein of LHCII type III,... [more]
CB23_SOLLC5.268e-7461.29Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_DUNTE7.442e-6770.00Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA9.632e-6465.16Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PINSY1.099e-4987.84Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB26_ARATH5.817e-3844.12Chlorophyll a-b binding protein CP26, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-008-H09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736012 ID=EY736012; Name=EY736012; organism=Citrus sinensis; type=EST; length=840bp
CCACGCGTCCGCTCGAACACTAGAGCTCACCAACAACTCCGATCATTGTA
AAATGGCAACCTCGACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGCT
GTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTC
CATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACG
GCCCGGACAGAGTCAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAGC
TACTTGACTGGTGAGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGCT
TTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCC
ACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTC
TTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGG
GGCCCAAATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCC
TGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTG
ATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGT
GACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTTGGGTGTGGCT
GATGACCCGGAGGCTTTTGCTGAGCTCAGGGTTAATGAAATCAAGAATGG
AAGGTTGGCTATGTTCTCCATGTTTGGTTTCTCCGGTCAGGCCAGTGTTA
CCGGCAAGGGACCCGTAAAAAAATTGGCCGACCCGTTGGGTGACCTGGCC
AATACAATGCCTGGGCTACCCCACCAACTTGGTCCCGGAA
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