EY736012 | Citrus Genome Database

Overview


Name	EY736012
Unique Name	EY736012
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	840

Libraries


Library Name	Type
Sweet orange fruit, development stadium (6 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.343e-33
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 3

Query:  639 LGVADDPEAFAELRVNEIKNGRLAMFSMFGFSGQASVTGKGPVKKLADPLGDLAN 803
            LG+A+DPEAFAEL+V EIKNGRLAMFSMFGF  QA VTGKGP++ LAD L D  N
Sbjct:  197 LGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251

HSP 2 Score: 82.0333 bits (201), Expect = 1.343e-33
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2

Query:  497 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLY 616
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLY
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLY 189

[Close]

BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.343e-33
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 3

Query:  639 LGVADDPEAFAELRVNEIKNGRLAMFSMFGFSGQASVTGKGPVKKLADPLGDLAN 803
            LG+A+DPEAFAEL+V EIKNGRLAMFSMFGF  QA VTGKGP++ LAD L D  N
Sbjct:  197 LGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251

HSP 2 Score: 82.0333 bits (201), Expect = 1.343e-33
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2

Query:  497 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLY 616
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLY
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLY 189

[Close]

BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.397e-33
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 3

Query:  639 LGVADDPEAFAELRVNEIKNGRLAMFSMFGFSGQASVTGKGPVKKLADPLGDLAN 803
            LG+A+DPEAFAEL+V EIKNGRLAMFSMFGF  QA VTGKGP++ LAD L D  N
Sbjct:   48 LGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 102

HSP 2 Score: 82.0333 bits (201), Expect = 1.397e-33
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2

Query:  497 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLY 616
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLY
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLY 40

[Close]

BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.278e-33
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2

Query:  497 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLY 616
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLY
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLY 191

HSP 2 Score: 82.0333 bits (201), Expect = 2.278e-33
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 3

Query:  639 LGVADDPEAFAELRVNEIKNGRLAMFSMFGFSGQASVTGKGPVKKLADPLGDLAN 803
            LG+A+DPEAFAEL+V EIKNGRLAMFSMFGF  QA VTGKGP++ LAD + D  N
Sbjct:  199 LGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 253

[Close]

BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.278e-33
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2

Query:  497 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLY 616
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLY
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLY 191

HSP 2 Score: 82.0333 bits (201), Expect = 2.278e-33
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 3

Query:  639 LGVADDPEAFAELRVNEIKNGRLAMFSMFGFSGQASVTGKGPVKKLADPLGDLAN 803
            LG+A+DPEAFAEL+V EIKNGRLAMFSMFGF  QA VTGKGP++ LAD + D  N
Sbjct:  199 LGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 253

[Close]

BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.519e-32
Identity = 40/48 (83.33%), Postives = 43/48 (89.58%), Query Frame = 2

Query:  476 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLY 616
            LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LY
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLY 48

HSP 2 Score: 76.2554 bits (186), Expect = 9.519e-32
Identity = 38/50 (76.00%), Postives = 41/50 (82.00%), Query Frame = 3

Query:  654 DPEAFAELRVNEIKNGRLAMFSMFGFSGQASVTGKGPVKKLADPLGDLAN 803
            DPEAFAEL+V EIKNGRLAMFSMFGF  QA VTGKGP++ LAD L D  N
Sbjct:   61 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 110

[Close]

BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.428e-21
Identity = 52/141 (36.88%), Postives = 76/141 (53.90%), Query Frame = 2

Query:  203 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVTDPLY 616
            PDR  +   F G  PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q       +Y  + +         ++  ++VL+G  EG R A    P    TDP++
Sbjct:   63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ-------EYFTDTT--------TLFIVELVLIGWAEGRRWADIIKPGCVNTDPIF 184

HSP 2 Score: 41.2022 bits (95), Expect = 1.428e-21
Identity = 22/46 (47.83%), Postives = 25/46 (54.35%), Query Frame = 3

Query:  657 PEAFAELRVNEIKNGRLAMFSMFGFSGQASVTGKGPVKKLADPLGD 794
            P    ELR  EIKNGRLAM ++ G   Q   TG GP+  L   L D
Sbjct:  212 PAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLAD 257

[Close]

BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.416e-21
Identity = 55/154 (35.71%), Postives = 79/154 (51.30%), Query Frame = 2

Query:  164 GSKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVTDPLY 616
            GS+SV+  +    PDR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q       +Y  + +         ++  ++VL+G  EG R A    P    TDP++
Sbjct:   50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ-------EYFTDTT--------TLFVIELVLIGWAEGRRWADIIKPGCVNTDPIF 184

HSP 2 Score: 41.2022 bits (95), Expect = 2.416e-21
Identity = 22/46 (47.83%), Postives = 25/46 (54.35%), Query Frame = 3

Query:  657 PEAFAELRVNEIKNGRLAMFSMFGFSGQASVTGKGPVKKLADPLGD 794
            P    ELR  EIKNGRLAM ++ G   Q   TG GP+  L   L D
Sbjct:  212 PAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLAD 257

[Close]

BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 6.722e-18
Identity = 37/70 (52.86%), Postives = 43/70 (61.43%), Query Frame = 3

Query:  639 LGVADDPEAFAELRVNEIKNGRLAMFSMFGFSGQASVTGKGPVKK----LADPLGDLANTMPGLPHQLGP 836
            LG+ADDP+ F EL+V EIKNGRLAM  M GF  QA VTG+GPV+     L DP     N +  L  Q  P
Sbjct:   54 LGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDP--SAHNGLTALVTQFAP 121

HSP 2 Score: 47.3654 bits (111), Expect = 6.722e-18
Identity = 27/43 (62.79%), Postives = 31/43 (72.09%), Query Frame = 2

Query:  497 SLIHAQSILAIWACQVVLMGAVEGYR---IAGGPLGEVTDPLY 616
            +LIHA+S+LAI A QV+LMGAVEGYR    A G  GE  D LY
Sbjct:    4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLY 46

[Close]

BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 1.582e-15
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 3

Query:  639 LGVADDPEAFAELRVNEIKNGRLAMFSMFGFSGQASVTGKGPVKKLADPLGDLANT 806
            LG+A DP   A+L++ EIK+ RLAM    GF+ QA+ TGKGP+   A  L D  +T
Sbjct:  223 LGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHT 278

HSP 2 Score: 51.2174 bits (121), Expect = 1.582e-15
Identity = 71/248 (28.63%), Postives = 92/248 (37.10%), Query Frame = 2

Query:   56 ATSTMALSSSFVGKAVNLAPSGNELSNGGRISM--RKTG---SKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA----------GG----PLGEVTDPL 613
            ATST A +SS +G  V    S N      R     +K     +K+V S  P + P           + P YL G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L   GV      W  AG ++    G  YLG P      ++  IW  +V+++G +E  R A          GG    PLG  +DP+
Sbjct:    3 ATSTAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKTVISDRPLWFP---------GAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWL--TGV-----TWQDAG-KVELVDGSSYLGQPLPFSISTL--IW-IEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPV 230

The following BLAST results are available for this feature:

BLAST of EY736012 vs. ExPASy Swiss-Prot

BLAST of EY736012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75


Match Name	E-value	Identity	Description
CB2C_SOLLC	1.343e-33	74.55	Chlorophyll a-b binding protein 1C, chloroplastic ...	[more]
CB2A_SOLLC	1.343e-33	74.55	Chlorophyll a-b binding protein 1A, chloroplastic ...	[more]
CB2D_SOLLC	1.397e-33	74.55	Chlorophyll a-b binding protein 1D (Fragment) OS=S...	[more]
CB2F_SOLLC	2.278e-33	95.00	Chlorophyll a-b binding protein 3B, chloroplastic ...	[more]
CB2E_SOLLC	2.278e-33	95.00	Chlorophyll a-b binding protein 3A, chloroplastic ...	[more]
CB21_RAPSA	9.519e-32	83.33	Chlorophyll a-b binding of LHCII type 1 protein (F...	[more]
CB12_SOLLC	1.428e-21	36.88	Chlorophyll a-b binding protein 7, chloroplastic O...	[more]
CB12_PETHY	2.416e-21	35.71	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB21_EUGGR	6.722e-18	52.86	Chlorophyll a-b binding protein of LHCII type 1 (F...	[more]
CB4B_ARATH	1.582e-15	48.21	Chlorophyll a-b binding protein CP29.2, chloroplas...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C3-705-008-H09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY736012 ID=EY736012; Name=EY736012; organism=Citrus sinensis; type=EST; length=840bp
CCACGCGTCCGCTCGAACACTAGAGCTCACCAACAACTCCGATCATTGTA
AAATGGCAACCTCGACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGCT
GTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTC
CATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACG
GCCCGGACAGAGTCAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAGC
TACTTGACTGGTGAGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGCT
TTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCC
ACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTC
TTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGG
GGCCCAAATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCC
TGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTG
ATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGT
GACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTTGGGTGTGGCT
GATGACCCGGAGGCTTTTGCTGAGCTCAGGGTTAATGAAATCAAGAATGG
AAGGTTGGCTATGTTCTCCATGTTTGGTTTCTCCGGTCAGGCCAGTGTTA
CCGGCAAGGGACCCGTAAAAAAATTGGCCGACCCGTTGGGTGACCTGGCC
AATACAATGCCTGGGCTACCCCACCAACTTGGTCCCGGAA