EY736012
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 55.4546 bits (132), Expect = 1.671e-14 Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 3 Query: 639 LGVADDPEAFAELRVNEIKNGRLAMFSMFGFSGQASVTGKGPVKKLADPLGDLANT 806 LG+A DPE A+L++ EIK+ RLAM + GF+ QA+ TGKGP+ A L D +T Sbjct: 226 LGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHT 281 HSP 2 Score: 45.0542 bits (105), Expect = 1.671e-14 Identity = 57/209 (27.27%), Postives = 77/209 (36.84%), Query Frame = 2 Query: 155 RKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA----------GG----PLGEVTDP 610 +K+ K+V++ P + P + P +L G GDYG+D GL E AKN RE E+IH RWAML LG + E L GV W AG ++ G YLG P ++ IW +V+++G +E R A GG PLG DP Sbjct: 44 KKSAKKTVTTDRPLWYPGAIS---------PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL--TGV-----TWQDAG-KVELVDGSSYLGQPLPFSISTL--IW-IEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADP 232
BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.911e-14 Identity = 55/150 (36.67%), Postives = 71/150 (47.33%), Query Frame = 2 Query: 53 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNP 496 MA+S+ S S VG LAPS +G T S V+ + W F G+P P++L G PGD+G+D GL+ PE F + +E E+ HCRWAML G + PE L G W KA +G YLGNP Sbjct: 1 MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP 132
BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 9.364e-13 Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 2 Query: 233 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 460 + EPP+ LTGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PELL G+ WF+AG + Sbjct: 193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261 HSP 2 Score: 72.0182 bits (175), Expect = 4.647e-12 Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 2 Query: 242 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK 445 PP YLTGE GD G+D AGL+ADP TF + + EV HCR +ML +GC+ PELL G WF+ Sbjct: 380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWFQ 440
BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 47.3654 bits (111), Expect = 6.858e-12 Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 3 Query: 639 LGVADDPEAFAELRVNEIKNGRLAMFSMFGFSGQASVTGKGPVKKLA 779 LG+A DPE L++ EIK+ RLAM + F+ QA+ TGKGPV LA Sbjct: 226 LGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLA 272 HSP 2 Score: 44.2838 bits (103), Expect = 6.858e-12 Identity = 65/245 (26.53%), Postives = 84/245 (34.29%), Query Frame = 2 Query: 53 MATSTMALSSSFVGKAVNLAPSGN---ELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR----------IAGG---PLGEVTDP 610 MAT+T A +S G + G + G +K S DR+ + PP +L G GD G+D GL E AKN RE E+IH RWAMLG LG + E L G+ W AG EG YLG P ++ IW +V+++G +E R GG PLG DP Sbjct: 1 MATTTAAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFP--GANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEAL--TGI-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAADP 232
BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 5.138e-11 Identity = 39/89 (43.82%), Postives = 47/89 (52.81%), Query Frame = 2 Query: 236 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNP 496 G+P PSYL G PGD+G+D+ GL P + +E E+IHCRWAML G + PE L G W KA GG YLG P Sbjct: 52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP 133 The following BLAST results are available for this feature:
BLAST of EY736012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >EY736012 ID=EY736012; Name=EY736012; organism=Citrus sinensis; type=EST; length=840bpback to top |