EY736012

Overview
NameEY736012
Unique NameEY736012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 1.671e-14
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 3
Query:  639 LGVADDPEAFAELRVNEIKNGRLAMFSMFGFSGQASVTGKGPVKKLADPLGDLANT 806
            LG+A DPE  A+L++ EIK+ RLAM +  GF+ QA+ TGKGP+   A  L D  +T
Sbjct:  226 LGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHT 281          

HSP 2 Score: 45.0542 bits (105), Expect = 1.671e-14
Identity = 57/209 (27.27%), Postives = 77/209 (36.84%), Query Frame = 2
Query:  155 RKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA----------GG----PLGEVTDP 610
            +K+  K+V++  P + P  +          P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L   GV      W  AG ++    G  YLG P      ++  IW  +V+++G +E  R A          GG    PLG   DP
Sbjct:   44 KKSAKKTVTTDRPLWYPGAIS---------PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL--TGV-----TWQDAG-KVELVDGSSYLGQPLPFSISTL--IW-IEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADP 232          
BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.911e-14
Identity = 55/150 (36.67%), Postives = 71/150 (47.33%), Query Frame = 2
Query:   53 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNP 496
            MA+S+   S S VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP
Sbjct:    1 MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP 132          
BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.364e-13
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 2
Query:  233 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 460
            + EPP+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG  +
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261          

HSP 2 Score: 72.0182 bits (175), Expect = 4.647e-12
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 2
Query:  242 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFK 445
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL       G   WF+
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWFQ 440          
BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 6.858e-12
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 3
Query:  639 LGVADDPEAFAELRVNEIKNGRLAMFSMFGFSGQASVTGKGPVKKLA 779
            LG+A DPE    L++ EIK+ RLAM +   F+ QA+ TGKGPV  LA
Sbjct:  226 LGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLA 272          

HSP 2 Score: 44.2838 bits (103), Expect = 6.858e-12
Identity = 65/245 (26.53%), Postives = 84/245 (34.29%), Query Frame = 2
Query:   53 MATSTMALSSSFVGKAVNLAPSGN---ELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR----------IAGG---PLGEVTDP 610
            MAT+T A +S   G  +     G    +   G     +K       S       DR+ +       PP +L G   GD G+D  GL    E             AKN                                RE E+IH RWAMLG LG +  E L   G+      W  AG     EG   YLG P      ++  IW  +V+++G +E  R            GG   PLG   DP
Sbjct:    1 MATTTAAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFP--GANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEAL--TGI-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAADP 232          
BLAST of EY736012 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.138e-11
Identity = 39/89 (43.82%), Postives = 47/89 (52.81%), Query Frame = 2
Query:  236 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNP 496
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP 133          
The following BLAST results are available for this feature:
BLAST of EY736012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB4A_ARATH1.671e-1450.00Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB121_HORVU2.911e-1436.67Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
LH18_EUGGR9.364e-1346.05Light-harvesting complex I LH38 proteins (Fragment... [more]
CB4C_ARATH6.858e-1253.19Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB11_SOLLC5.138e-1143.82Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-008-H09-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736012 ID=EY736012; Name=EY736012; organism=Citrus sinensis; type=EST; length=840bp
CCACGCGTCCGCTCGAACACTAGAGCTCACCAACAACTCCGATCATTGTA
AAATGGCAACCTCGACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGCT
GTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTC
CATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACG
GCCCGGACAGAGTCAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAGC
TACTTGACTGGTGAGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGCT
TTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCC
ACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTC
TTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGG
GGCCCAAATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCC
TGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTG
ATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGT
GACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTTGGGTGTGGCT
GATGACCCGGAGGCTTTTGCTGAGCTCAGGGTTAATGAAATCAAGAATGG
AAGGTTGGCTATGTTCTCCATGTTTGGTTTCTCCGGTCAGGCCAGTGTTA
CCGGCAAGGGACCCGTAAAAAAATTGGCCGACCCGTTGGGTGACCTGGCC
AATACAATGCCTGGGCTACCCCACCAACTTGGTCCCGGAA
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