EY735933

Overview
NameEY735933
Unique NameEY735933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735933 vs. ExPASy Swiss-Prot
Match: PP135_ARATH (Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.948e-17
Identity = 56/215 (26.05%), Postives = 104/215 (48.37%), Query Frame = 2
Query:   23 QISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQXXXXXXXXXXXXRKNVVPDIFTYNLWISSRAATLSIDQVKKILDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWK 667
            Q+SEW+  +K+  +++ DYA+R+DL  K+ G+  GE   + +P S K    Y  LL     A   +K+E +F ++K      +    ++M+ L+  + +            ++N+ P + TY + I  + AT  I  +++IL+ M  D G   D+     L   + + + L +     L E E    +     +  L+ +YA LG +D++ +IWK
Sbjct:  181 QMSEWLEANKKIEMTERDYASRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSELVFNKMKDLGFPLSGFTCDQMLLLHKRIDR-KKIADVLLLMEKENIKPSLLTYKILIDVKGATNDISGMEQILETMK-DEGVELDFQTQA-LTARHYSGAGLKDKAEKVLKEMEGESLEANRRAFKDLLSIYASLGREDEVKRIWK 392          
BLAST of EY735933 vs. ExPASy Swiss-Prot
Match: PPR19_ARATH (Pentatricopeptide repeat-containing protein At1g07590, mitochondrial OS=Arabidopsis thaliana GN=At1g07590 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.166e-15
Identity = 58/248 (23.39%), Postives = 110/248 (44.35%), Query Frame = 2
Query:   23 QISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQXXXXXXXXXXXXRKNVVPDIFTYNLWISSRAATLSIDQVKKILDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEI 766
            ++ EW++  + + L + +Y+  ++   K+ G+  GE+ F  +P   +    Y  L+           A E  +++++     + L+YN ++    + G+                 P + TY++ +   A   +ID V K  D M   +G   + V Y  L   +  A     AE+ T  E EKSIT   W T D L+ILY  LG + ++ + W  +R     + S++Y+    ++  +G+L    E+
Sbjct:  118 ELMEWIIRERPYRLGELEYSYLLEFTVKLHGVSQGEKLFTRVPQEFQNELLYNNLVIACLDQGVIRLALEYMKKMRELGYRTSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHILMKLEANEHNIDGVLKAFDGMK-KAGVEPNEVSYCILAMAHAVARLYTVAEAYT-EEIEKSITGDNWSTLDILMILYGRLGKEKELARTWNVIR-GFHHVRSKSYLLATEAFARVGNLDRAEEL 362          
BLAST of EY735933 vs. ExPASy Swiss-Prot
Match: PPR44_ARATH (Pentatricopeptide repeat-containing protein At1g15480, mitochondrial OS=Arabidopsis thaliana GN=At1g15480 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.830e-15
Identity = 54/216 (25.00%), Postives = 110/216 (50.93%), Query Frame = 2
Query:   23 QISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQXXXXXXXXXXXXRKNVVPDIFTYNLWISSRAATLSIDQVKKILDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAE-KSITQRQWITYDFLIILYAGLGNKDKIDQIWK 667
            Q++EW+  +K+F + + DYA R+DL++KV G + GE Y + +P S +    Y  LL  +        AE +F ++K      +    N+M+ LY  V +            ++N+ P++ TY + I ++ ++  I  +++I++ M   S G +  ++   L+  +  ++ L       L E E +S+ + + +  D L+ +Y  L  +D++ ++WK
Sbjct:  179 QMTEWLDENKQFEMEERDYACRLDLISKVRGWYKGEAYIKTIPESFRGELVYRTLLANHVATSNVRTAEAVFNKMKDLGFPLSTFTCNQMLILYKRVDK-KKIADVLLLLEKENLKPNLNTYKILIDTKGSSNDITGMEQIVETMK--SEGVELDLRARALIARHYASAGLKEKAEKVLKEMEGESLEENRHMCKD-LLSVYGYLQREDEVRRVWK 390          
BLAST of EY735933 vs. ExPASy Swiss-Prot
Match: PP234_ARATH (Pentatricopeptide repeat-containing protein At3g15590, mitochondrial OS=Arabidopsis thaliana GN=At3g15590 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.086e-14
Identity = 60/247 (24.29%), Postives = 114/247 (46.15%), Query Frame = 2
Query:   23 QISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQXXXXXXXXXXXXRKNVVPDIFTYNLWISSRAATLSIDQVKKILDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGE 763
            Q+ EW+  + +F  ++++YA+++DL+ KV  +   E + + +P S++    Y  LL          KAE++F ++K+     +    N+++ LY S+              R+N+ P   TY+  I+S+     I  ++KI++ +  +    D  ++ + L   YI A     A+        K + Q  W+    L+ LYA +G+ D + ++    R   Q     N I  + ++   G LKEV E
Sbjct:  194 QLWEWLGANTQFEFTEANYASQLDLVAKVHSLQKAEIFLKDIPESSRGEVVYRTLLANCVLKHHVNKAEDIFNKMKELKFPTSVFACNQLLLLY-SMHDRKKISDVLLLMERENIKPSRATYHFLINSKGLAGDITGMEKIVETIKEEGIELDPELQSI-LAKYYIRAGLKERAQDLMKEIEGKGLQQTPWVCRS-LLPLYADIGDSDNVRRL---SRFVDQNPRYDNCISAIKAW---GKLKEVEE 431          
The following BLAST results are available for this feature:
BLAST of EY735933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PP135_ARATH3.948e-1726.05Pentatricopeptide repeat-containing protein At1g80... [more]
PPR19_ARATH2.166e-1523.39Pentatricopeptide repeat-containing protein At1g07... [more]
PPR44_ARATH2.830e-1525.00Pentatricopeptide repeat-containing protein At1g15... [more]
PP234_ARATH4.086e-1424.29Pentatricopeptide repeat-containing protein At3g15... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-007-H04-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735933 ID=EY735933; Name=EY735933; organism=Citrus sinensis; type=EST; length=881bp
CCACGCGTCCGATACAAGGTCGCAGATATCTGAATGGATGGTTACTCATA
AAGAGTTTGTGTTATCAGACTCTGACTATGCTACCCGTATTGACTTGATG
ACAAAAGTATTTGGTATTCATTCGGGTGAGCGCTACTTTGAAGGGCTTCC
TCTCTCGGCAAAAACTAGTGAAACATACACTGCTCTCCTCCACTTGTATG
CTGGGGCGAAATGGACCGAGAAGGCCGAAGAGCTTTTTGAAAGAGTAAAG
CAGTCAAACCTGTCCTTCAATGCCCTTATGTATAATGAGATGATGACTTT
GTACATGTCAGTTGGACAAGTGGAAAAGGTAGCCTTAGTTGTTGAAGAGC
TAAAGCGGAAGAACGTTGTGCCAGATATTTTCACATATAATCTATGGATT
AGTTCACGCGCTGCAACACTCAGCATCGATCAAGTTAAAAAAATTTTGGA
TGAAATGAGCTGTGACTCTGGTGGCAGTGATGATTGGGTGAAGTACGTCA
ATCTCGTCAACATATATATAACTGCCAGTCATCTTGTGAATGCAGAGTCC
AGCACTCTGGTGGAAGCAGAGAAGAGTATAACACAAAGACAATGGATAAC
CTATGACTTCCTTATCATTTTGTATGCTGGTTTGGGAAACAAAGATAAAA
TTGATCAGATATGGAAATCCTTAAGGATGACTAAACAAAAGATGACGAGC
AGAAACTACATCTGCATTCTTTCATCTTATCTGATGCTTGGACATTTGAA
AGAAGTGGGAGAAATATTGGATCATGGAAACATCTGGCATTTCAGACTTT
GATATCTCCGCCTGTAATAAGCTTTGGGTGCATTTCAGATGTTGGATGAC
TGAAAGGCATGATTCTTGTTGCATGCTAGTG
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