EY735932

Overview
NameEY735932
Unique NameEY735932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_META3 (50S ribosomal protein L18P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.927e-22
Identity = 73/212 (34.43%), Postives = 106/212 (50.00%), Query Frame = 3
Query:   57 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEPEKYSLTF 692
            A+  +Y+V ++RRREGKT++R R++L+        TP  R V R +  +I AQI+     GD ++ SA++ E+ + G +    N  AAY TGLLL ++ LK        EGN E                  A+LD+GL   T G  V   LKG++D G+DIPHSE+   G  +             I G HV  Y + L  ++ EKY+  F
Sbjct:    2 AHGAKYRVPFRRRREGKTNFRLRLKLLLS-----RTP--RLVARKSLNNIVAQIVEYDEVGDKIVVSAHSKEIVKLGYKGHCGNVPAAYLTGLLLGKKALK--------EGNEE------------------AILDLGLNSATKGAAVLAILKGAVDAGMDIPHSEEILPGEDR-------------INGSHVKEYAELLKVEDEEKYNKQF 167          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_METB6 (50S ribosomal protein L18P OS=Methanoregula boonei (strain 6A8) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.517e-22
Identity = 70/192 (36.46%), Postives = 94/192 (48.96%), Query Frame = 3
Query:   69 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAY 644
            RY V ++RRREG+TDY  R +L+  D         R VVR TN+ I  Q+++A + GD  L SA + EL +YG      N  AAY TGLL A +  K               G+D             A+LD+GL + T G RVF ALKG++DGGL+IP+ E       +             + G H+AAY
Sbjct:    6 RYLVAFRRRREGRTDYYQRTKLVVADAP-------RMVVRRTNRHIIVQLVTAEMEGDKTLVSANSAELEKYGYTGATANTPAAYLTGLLFAAKAKK--------------AGQD------------SAILDIGLNRATPGARVFAALKGAVDGGLEIPYGESILPSEDR-------------LKGEHIAAY 151          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_PYRAE (50S ribosomal protein L18P OS=Pyrobaculum aerophilum GN=rpl18p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.236e-21
Identity = 72/208 (34.62%), Postives = 94/208 (45.19%), Query Frame = 3
Query:   69 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEPEKYSLTF 692
            RY+V ++RRREG T+YR R +L+   K        R VVR TNK I AQI+ A   GD+ +  A    L ++G      N AAAY  GL++  +                             RR   A+LD+GL +   G RVF  LKG+LD GL IPH E+      +             I G HVA Y + L E+ PE Y   F
Sbjct:    6 RYKVPFRRRREGLTNYRKRRKLLLSKKP-------RLVVRKTNKHIIAQIVVAKPQGDVTIVGADTRILAKFGWRGDENNVAAAYLLGLVVGYK--------------------------ARARRVEEAILDIGLHRPAPGARVFAVLKGALDAGLKIPHGEEVLPDEDR-------------IKGKHVAEYAEKLKEENPEAYKARF 167          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_CALMQ (50S ribosomal protein L18P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.227e-21
Identity = 71/211 (33.65%), Postives = 105/211 (49.76%), Query Frame = 3
Query:   69 RYQVKYKRRREGKTD-YRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVL-KMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEPEKYSLTF 692
            RY+VK++RRREGKTD Y+ RI +I        + K R VVRF+N+ + AQ+I ++  GD  +A A + EL  ++G   G  N  AAY  GLL+  R L K +++                           A+LDVGL + T G R+F  +KG++D GL++PH E             + +     + G H+A Y   L +  PE Y + F
Sbjct:    6 RYKVKFRRRREGKTDYYKRRIMVI--------SGKPRLVVRFSNRYVLAQVIVSAPQGDFTVAEASSRELVKKFGWLGGTGNTPAAYLVGLLIGYRALSKGIKL---------------------------AVLDVGLHRVTKGGRLFAVVKGAVDAGLEVPHDE-------------EVQPSEDRLNGEHIAQYAADLKQSNPELYKIRF 168          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_THENV (50S ribosomal protein L18P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.520e-21
Identity = 72/208 (34.62%), Postives = 97/208 (46.63%), Query Frame = 3
Query:   69 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEPEKYSLTF 692
            RY+V ++RRREG T+YR R RLI   K        R VVR TNK I AQ++ A   GD+ +       L ++G      N +AAY  GL+            A Y+  +    E              A+LD+GL +   G+RVF  LKG+LD GL+IPH E+      +D +          + G HVA Y   L E+ PE Y   F
Sbjct:    6 RYKVPFRRRREGLTNYRKRRRLILSRKP-------RLVVRKTNKHIIAQVVVAKPQGDVTIVGVDTRALAKFGWRGDENNTSAAYLLGLV------------AGYKARLRGVRE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPHGEE---VLPEDDR----------VSGKHVAEYAAKLKEENPELYKARF 167          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_KORCO (50S ribosomal protein L18P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.210e-21
Identity = 71/199 (35.68%), Postives = 97/199 (48.74%), Query Frame = 3
Query:   69 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMED 665
            RY+VK++RRREGKTDY  R+ L+   K        R VVR TN+ I  Q I     GD V+A A++ EL +YG   G  N  AAY TG L A R        A+  G  E                  A+LD+G   +T G+R++ ALKG LD G+D+PHS +      +             I G H+A++ + L E+
Sbjct:    6 RYKVKFRRRREGKTDYMKRLALLKSRKP-------RVVVRRTNRYIIVQFIGFKGEGDEVIAYAFSKELEKYGWPYGGKNLPAAYLTGYLAAMR--------AKKAGVTE------------------AILDIGRFPSTKGSRLYAALKGVLDAGIDVPHSPEILPDEDR-------------IRGEHIASFAEKLEEE 158          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_METM5 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.230e-20
Identity = 70/199 (35.18%), Postives = 101/199 (50.75%), Query Frame = 3
Query:   69 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMED 665
            +++V ++RRREGKTD+R R+ L+   K        R V R +  ++TAQ++S    GD+VL SA+  EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F  LKG+LD G+DIPH +           ++ AE  R  + G HV  Y ++L ED
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVTAQLMSYDEKGDVVLVSAHTKELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGD-----------EIIAEEER--LNGTHVKNYAESLKED 158          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_HALSA (50S ribosomal protein L18P OS=Halobacterium salinarium GN=rpl18p PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 1.230e-20
Identity = 68/201 (33.83%), Postives = 99/201 (49.25%), Query Frame = 3
Query:   69 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEP 671
            RY+V  +RRRE +TDY  R+RL+   K        R V R +NK +TAQ+++    GD  +ASA++ +L  YG      N  AAY TGLL  +R +                  D  VE         A+LD+GL   T G++VF   +G++D GLD+PH++   A +S+               G H+A Y ++L  DEP
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSRTR-------------GEHIAEYAESL--DEP 158          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_HALS3 (50S ribosomal protein L18P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.230e-20
Identity = 68/201 (33.83%), Postives = 99/201 (49.25%), Query Frame = 3
Query:   69 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEP 671
            RY+V  +RRRE +TDY  R+RL+   K        R V R +NK +TAQ+++    GD  +ASA++ +L  YG      N  AAY TGLL  +R +                  D  VE         A+LD+GL   T G++VF   +G++D GLD+PH++   A +S+               G H+A Y ++L  DEP
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLADWSRTR-------------GEHIAEYAESL--DEP 158          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_ARCFU (50S ribosomal protein L18P OS=Archaeoglobus fulgidus GN=rpl18p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.230e-20
Identity = 69/204 (33.82%), Postives = 104/204 (50.98%), Query Frame = 3
Query:   69 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEPEKY 680
            RY+V  +RRREGKT+YR R++L+   K        R VVR TN+ + AQI+  +  GD V+    +  L  +G +  L N  AAY TG+L+A++ L+            +  GE              A+LD+GL   T G+RVF  L+G+++GGL++PHS++     S+             I G H+AAY     E  PE++
Sbjct:    8 RYKVPLRRRREGKTNYRKRLKLLLSRKP-------RLVVRITNRRVIAQIVEYAPEGDRVVVGVDSAMLREFGWKGDLNNTPAAYLTGILIAKKALQ------------KGIGE--------------AVLDIGLHTPTRGSRVFAVLRGAVEGGLEVPHSDEVLPDDSR-------------IRGEHIAAY----YEMNPERF 161          
The following BLAST results are available for this feature:
BLAST of EY735932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
RL18_META32.927e-2234.4350S ribosomal protein L18P OS=Methanococcus aeolic... [more]
RL18_METB68.517e-2236.4650S ribosomal protein L18P OS=Methanoregula boonei... [more]
RL18_PYRAE3.236e-2134.6250S ribosomal protein L18P OS=Pyrobaculum aerophil... [more]
RL18_CALMQ4.227e-2133.6550S ribosomal protein L18P OS=Caldivirga maquiling... [more]
RL18_THENV5.520e-2134.6250S ribosomal protein L18P OS=Thermoproteus neutro... [more]
RL18_KORCO7.210e-2135.6850S ribosomal protein L18P OS=Korarchaeum cryptofi... [more]
RL18_METM51.230e-2035.1850S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_HALSA1.230e-2033.8350S ribosomal protein L18P OS=Halobacterium salina... [more]
RL18_HALS31.230e-2033.8350S ribosomal protein L18P OS=Halobacterium salina... [more]
RL18_ARCFU1.230e-2033.8250S ribosomal protein L18P OS=Archaeoglobus fulgid... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-007-H03-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735932 ID=EY735932; Name=EY735932; organism=Citrus sinensis; type=EST; length=850bp
CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGCCAAAGCTCAAAAG
TCAAAAGCTTACTTTAAGCGATATCAAGTTAAGTACAAGAGAAGGCGAGA
GGGAAAGACTGACTATCGGGCTAGGATTCGCCTGATCAACCAAGATAAAA
ACAAGTACAACACGCCAAAGTATCGGTTTGTTGTGCGATTCACCAACAAA
GACATCACTGCACAAATTATATCTGCCAGCATAGCCGGGGATATAGTCCT
TGCATCTGCTTATGCCCATGAGCTTCCCCGTTATGGTCTTGAGGTGGGCC
TCACTAATTATGCAGCAGCTTATTGCACTGGACTCCTCTTGGCCCGCCGA
GTCCTGAAAATGCTTGAGATGGATGCTGAGTATGAGGGGAACGTTGAGGC
AACAGGAGAGGACTATTCAGTTGAGCCAACTGAGAACAGGAGGCCTTTCC
GTGCCCTGCTCGATGTTGGTCTTGTGAAAACAACTACTGGTAACCGTGTC
TTTGGCGCTCTTAAGGGTTCATTGGATGGTGGACTTGATATCCCTCACAG
TGAGAAGAGATTTGCTGGATTCAGTAAGGATAGTAAGCAACTTGATGCTG
AAGTTCACCGTAAATACATCTATGGTGGTCATGTTGCTGCCTACATGAAG
ACTTTGATGGAAGATGAGCCAGAAAAGTACAGTCTCACTTTTGTGAATAC
TCCAGAGAGGTATTGAGGCTGATAACCCTGAAAAATTGACAAGAAGGTAA
TGCTGGCCTCGTGCAGACCCCTACCCGATAAATCCGAGAGGAACCTCCAC
CGACCCCAGAAGTAAACCTTCAAGAAATCGCTTTAGGGGATGGAGGCGGC
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