EY735932

Overview
NameEY735932
Unique NameEY735932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_THEPD (50S ribosomal protein L18P OS=Thermofilum pendens (strain Hrk 5) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.041e-19
Identity = 71/208 (34.13%), Postives = 100/208 (48.08%), Query Frame = 3
Query:   69 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEPEKYSLTF 692
            RY+V  KRRREGKT+Y  R +LI   K        R VVR  ++    QI  A+  GD+V+ASA+++EL +YG +    N  A Y  G L A++ LK        +G  E                  A++D+GL +    +RVF A+KG+LD GL IP  +       +D +          + G H+A Y K L E  PE + L F
Sbjct:    6 RYRVPLKRRREGKTNYYKRRKLIISGKP-------RLVVRVLSRTAIVQIAKATPKGDVVIASAHSNELKKYGWKGYRRNTPALYLLGFLAAKKALK--------QGVTE------------------AIVDIGLHRPVKASRVFAAVKGALDAGLKIPVGD---GVLPEDDR----------VRGEHIANYAKMLKESNPELFKLRF 167          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_METPE (50S ribosomal protein L18P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.360e-19
Identity = 68/192 (35.42%), Postives = 95/192 (49.48%), Query Frame = 3
Query:   69 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAY 644
            RY V ++RRREGKTDY  R +LI  ++        R VVR TN+ I  Q+I A + GD  L +A + EL  YG +   +N  AAY TG+L A                V+A   D+            A+LD+GL + T G +VF ALKG+++ GLD+PH E+      +             + G H+AAY
Sbjct:    6 RYFVPFRRRREGKTDYYKRGKLIVAEQP-------RMVVRKTNRHIIVQMIVAEMEGDKTLVTANSAELLDYGYKGSTSNTPAAYLTGMLFA----------------VKALNADHPA----------AILDIGLNRATYGAKVFAALKGAVEAGLDVPHGEEILPADER-------------VKGEHIAAY 151          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_HALMA (50S ribosomal protein L18P OS=Haloarcula marismortui GN=rpl18p PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 1.360e-19
Identity = 66/198 (33.33%), Postives = 93/198 (46.97%), Query Frame = 3
Query:   69 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLME 662
            RY+V  +RRRE +TDY  R+RL+   K        R V R +NK + AQ+++    GD  LASA++ +L  YG E    N  +AY TGLL   R           E  VE                  A+LD+GL   T G++VF   +G++D GLDIPH++   A + +               G H+A Y + L E
Sbjct:    6 RYKVPMRRRREARTDYHQRLRLLKSGKP-------RLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRA---------QEAGVE-----------------EAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHNDDVLADWQRTR-------------GAHIAEYDEQLEE 157          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_METKA (50S ribosomal protein L18P OS=Methanopyrus kandleri GN=rpl18p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.776e-19
Identity = 73/215 (33.95%), Postives = 101/215 (46.98%), Query Frame = 3
Query:   69 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELP-RYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEPEKYSLTFVNTPER 710
            RY+V ++RRREGKT+Y  R  LI  D         R V R T     AQI+  +  GD+ LASA++ EL  ++G +    N  AAY TG L   R L         E  +E                 RA++D+GL +   G+RVF  LKG+LD G+DIPH E+      +             I G H+A   + + E++PE+Y   F    ER
Sbjct:    9 RYRVPFRRRREGKTNYYKRRELIKADAP-------RLVARKTLNHNIAQIVDFAPHGDVTLASAHSIELRNKFGWKGHCGNTPAAYLTGYLCGLRAL---------ERGIE-----------------RAVIDIGLHRPVRGSRVFAMLKGALDAGMDIPHGEEVLPPEDR-------------IRGEHIANLARQIKEEDPEEYERRFSKYLER 177          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_METLZ (50S ribosomal protein L18P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.319e-19
Identity = 63/162 (38.89%), Postives = 83/162 (51.23%), Query Frame = 3
Query:   69 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSE 554
            RY V+++RRREG+TDY  R RLI   +N       R VVR TN+ I  Q+I+A + GD  L    + EL  +G +  L N  AAY TG+L A R  K     A YEG +                      D+GL   +TG RVF A+KG++D G D+P  E
Sbjct:    6 RYFVQFRRRREGRTDYYQRQRLIVSGRN-------RMVVRKTNRHIIIQLIAAQMDGDYTLVHVNSRELVNFGYKGYLGNTPAAYLTGMLFAVRAQK-----AGYEGGI---------------------ADIGLQVASTGARVFAAIKGAVDAGFDVPVGE 134          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_METVS (50S ribosomal protein L18P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.029e-19
Identity = 72/208 (34.62%), Postives = 104/208 (50.00%), Query Frame = 3
Query:   69 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEPEKYSLTF 692
            +++V ++RRREGKTD+R R+ L+   K        R V R +  +I AQ+++    GDIVL SA++ EL + G +    N  AAY TGLLL ++ ++        EG  E                  A+LD GL + T G  +F  LKG+LD G+DIP  E+  A    D ++L+         G H+  Y + L EDE E Y   F
Sbjct:    6 KHRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPCGEEIIA----DEERLN---------GTHIKQYAELLKEDE-EAYKKQF 166          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_METVA (50S ribosomal protein L18P OS=Methanococcus vannielii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.029e-19
Identity = 72/208 (34.62%), Postives = 104/208 (50.00%), Query Frame = 3
Query:   69 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEPEKYSLTF 692
            +++V ++RRREGKTD+R R+ L+   K        R V R +  +I AQ+++    GDIVL SA++ EL + G +    N  AAY TGLLL ++ ++        EG  E                  A+LD GL + T G  +F  LKG+LD G+DIP  E+  A    D ++L+         G H+  Y + L EDE E Y   F
Sbjct:    8 KHRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPCGEEIIA----DEERLN---------GTHIKQYAELLKEDE-EAYKKQF 168          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_SULTO (50S ribosomal protein L18P OS=Sulfolobus tokodaii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19
Identity = 72/219 (32.88%), Postives = 101/219 (46.12%), Query Frame = 3
Query:   57 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEPEKYSLTFVNTPER 710
            A+   Y+VKY+RRREGKT+Y  R   +  +         R VVR TNK I AQI   +  GD+++ +A++ EL  ++G +  L N  AAY TG LL  R LK         G  E                  A+ D+GL     G+R+F A+KG++D GL IP                D  +    I G H+A+Y + L  + PE +   F    ER
Sbjct:    2 AHGPNYRVKYRRRREGKTNYYKRYTYVINNTT-------RLVVRLTNKYIIAQIAKFNPKGDVIVVAAHSMELAKKFGWKGDLNNTPAAYLTGYLLGVRALK--------AGIKE------------------AVADIGLFVPVKGSRIFTAIKGAIDAGLSIPVG--------------DLGIKEDRIKGVHIASYAQKLEAENPELFKRLFSKYLER 173          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_NANEQ (50S ribosomal protein L18P OS=Nanoarchaeum equitans GN=rpl18p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19
Identity = 70/212 (33.02%), Postives = 99/212 (46.70%), Query Frame = 3
Query:   57 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEPEKYSLTF 692
            A+  RY+V ++RRREGKT YR R++L+   K        R VVR  N +I AQ++     GD V+ + +++ L +YG +    N  +AY  GL+     LK                          R    A+LD+G  K+T GN ++  LKG+LD GL+IPHSE       +             I G H+A Y K L E+E E Y   F
Sbjct:    2 AHGPRYRVPFRRRREGKTVYRKRLKLLLSGKP-------RLVVRRFNSNILAQLVEYDPKGDRVIFTIHSNVLKKYGWKGHRGNLPSAYLVGLIAGYEALK--------------------------RGYKEAVLDIGRYKSTKGNALYAVLKGALDAGLNIPHSETILPSEDR-------------IRGEHIANYAKMLKENE-ELYKKQF 166          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_PYRCJ (50S ribosomal protein L18P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.748e-19
Identity = 67/208 (32.21%), Postives = 95/208 (45.67%), Query Frame = 3
Query:   69 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEPEKYSLTF 692
            RY+V ++RRREG T+YR R +L+   K        R VVR TNK + AQI+ A   GD  +       L ++G +    N +AAY  GL++             Y+   +   E              A+LD+GL + T G RVF  +KG +D G+++PH E             +     + I G HVA Y K L E+ PE Y   F
Sbjct:    6 RYKVPFRRRREGVTNYRKRRKLLLSRKP-------RLVVRKTNKHLIAQIVIARPHGDETVVGLDTRVLSKFGWKGDENNTSAAYLLGLIVG------------YKARAKGIKE--------------AILDIGLHRPTPGARVFAVMKGVIDAGVEVPHGE-------------EVVPSEERIRGEHVAEYAKRLKEEAPEAYKARF 167          
The following BLAST results are available for this feature:
BLAST of EY735932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
RL18_THEPD1.041e-1934.1350S ribosomal protein L18P OS=Thermofilum pendens ... [more]
RL18_METPE1.360e-1935.4250S ribosomal protein L18P OS=Methanosphaerula pal... [more]
RL18_HALMA1.360e-1933.3350S ribosomal protein L18P OS=Haloarcula marismort... [more]
RL18_METKA1.776e-1933.9550S ribosomal protein L18P OS=Methanopyrus kandler... [more]
RL18_METLZ2.319e-1938.8950S ribosomal protein L18P OS=Methanocorpusculum l... [more]
RL18_METVS3.029e-1934.6250S ribosomal protein L18P OS=Methanococcus vannie... [more]
RL18_METVA3.029e-1934.6250S ribosomal protein L18P OS=Methanococcus vannie... [more]
RL18_SULTO5.167e-1932.8850S ribosomal protein L18P OS=Sulfolobus tokodaii ... [more]
RL18_NANEQ5.167e-1933.0250S ribosomal protein L18P OS=Nanoarchaeum equitan... [more]
RL18_PYRCJ6.748e-1932.2150S ribosomal protein L18P OS=Pyrobaculum calidifo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-007-H03-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735932 ID=EY735932; Name=EY735932; organism=Citrus sinensis; type=EST; length=850bp
CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGCCAAAGCTCAAAAG
TCAAAAGCTTACTTTAAGCGATATCAAGTTAAGTACAAGAGAAGGCGAGA
GGGAAAGACTGACTATCGGGCTAGGATTCGCCTGATCAACCAAGATAAAA
ACAAGTACAACACGCCAAAGTATCGGTTTGTTGTGCGATTCACCAACAAA
GACATCACTGCACAAATTATATCTGCCAGCATAGCCGGGGATATAGTCCT
TGCATCTGCTTATGCCCATGAGCTTCCCCGTTATGGTCTTGAGGTGGGCC
TCACTAATTATGCAGCAGCTTATTGCACTGGACTCCTCTTGGCCCGCCGA
GTCCTGAAAATGCTTGAGATGGATGCTGAGTATGAGGGGAACGTTGAGGC
AACAGGAGAGGACTATTCAGTTGAGCCAACTGAGAACAGGAGGCCTTTCC
GTGCCCTGCTCGATGTTGGTCTTGTGAAAACAACTACTGGTAACCGTGTC
TTTGGCGCTCTTAAGGGTTCATTGGATGGTGGACTTGATATCCCTCACAG
TGAGAAGAGATTTGCTGGATTCAGTAAGGATAGTAAGCAACTTGATGCTG
AAGTTCACCGTAAATACATCTATGGTGGTCATGTTGCTGCCTACATGAAG
ACTTTGATGGAAGATGAGCCAGAAAAGTACAGTCTCACTTTTGTGAATAC
TCCAGAGAGGTATTGAGGCTGATAACCCTGAAAAATTGACAAGAAGGTAA
TGCTGGCCTCGTGCAGACCCCTACCCGATAAATCCGAGAGGAACCTCCAC
CGACCCCAGAAGTAAACCTTCAAGAAATCGCTTTAGGGGATGGAGGCGGC
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