EY735932

Overview
NameEY735932
Unique NameEY735932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_STAMF (50S ribosomal protein L18P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.151e-18
Identity = 74/209 (35.41%), Postives = 98/209 (46.89%), Query Frame = 3
Query:   69 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEPEKYSLTF 692
            RY+V  +RRREGKT+Y  R +++            RFVVR T K I  QI++A   GDI +A+A++ EL  +YG   GL N  AAY TGLL A R LK               G  Y+V             D+GL   T G +VF A+K + D GL +P  E+      +             I G H+A++ K L E  PE Y   F
Sbjct:    6 RYKVPKRRRREGKTNYYKRYKMVLSGHP-------RFVVRKTLKHIIVQIVTAKPEGDITIAAAHSRELYKKYGWMGGLGNTPAAYLTGLLAALRGLK--------------AGIKYAVP------------DIGLHVPTRGAKVFAAIKAANDVGLKVPVGEEVVPSDDR-------------IRGEHIASWAKMLQEASPEAYERFF 168          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_THESM (50S ribosomal protein L18P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.503e-18
Identity = 71/213 (33.33%), Postives = 101/213 (47.42%), Query Frame = 3
Query:   57 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEPEKYSLTF 692
            A+  RY+V ++RRREGKT+Y  R+ L+   K        R VVR T     AQI+  +  GD  + SA+  EL R +G +    N  +AY  GLL+  + L         E  +E                  A+LD+GL   T G+ +F  LKG++D GL++PHSE+ + G              + I G H+A Y K L ED+ E Y   F
Sbjct:    2 AHGPRYRVPFRRRREGKTNYHKRLALLKSGKP-------RLVVRKTLNHHVAQIVLYAPEGDKTVVSAHTRELMRDFGWKGHGGNTPSAYLLGLLIGYKAL---------EKGIE-----------------EAILDIGLHPPTKGSSIFAVLKGAVDAGLNVPHSEEIYPG-------------EERINGKHIAEYAKMLKEDD-ENYKKQF 167          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_METAC (50S ribosomal protein L18P OS=Methanosarcina acetivorans GN=rpl18p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.963e-18
Identity = 67/207 (32.37%), Postives = 104/207 (50.24%), Query Frame = 3
Query:   69 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEPEKYSLT 689
            RY+V ++RRREG+T+Y  R++L+   ++       R VVR +++++  Q+I+ +  GDI  +SA ++EL +YG      N  AAY TGLL     LK L+    YEG +                     LD+GL  ++ G+RV+ ALKG +D G +IP S + F    +             I G H+A Y +    D PE++  T
Sbjct:    6 RYKVPFRRRREGRTNYHLRLKLLLSRQD-------RVVVRKSSRNVQIQLIAPTPDGDITYSSAVSNELAKYGYTGATGNTTAAYLTGLLFG---LKSLQKG--YEGGI---------------------LDIGLQASSAGSRVYAALKGVVDSGFEIPCSPEVFPPDER-------------IRGEHIAGYREE-SSDLPEQFEAT 165          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_METBF (50S ribosomal protein L18P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.374e-18
Identity = 65/207 (31.40%), Postives = 101/207 (48.79%), Query Frame = 3
Query:   69 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEPEKYSLT 689
            RY+V ++RRREG+T+Y  R++L+   ++       R VVR + +++  Q+I+ +  GDI  +SA + EL +YG      N  AAY TGLL   + LK       YEG +                     LD+GL  ++ G+RV+ ALKG +D G ++P S + F    +             I G H+A Y +    D PE++  T
Sbjct:    6 RYKVPFRRRREGRTNYHLRLKLLISKQD-------RVVVRKSARNVQIQLIAPTPEGDITYSSAVSSELAKYGYTGVTGNTTAAYLTGLLFGLKSLK-----KGYEGGI---------------------LDIGLQASSAGSRVYAALKGIVDSGFEVPCSPEVFPSDER-------------IRGEHIAEYREE-SSDLPEQFEAT 165          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_UNCMA (50S ribosomal protein L18P OS=Uncultured methanogenic archaeon RC-I GN=rpl18p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.461e-18
Identity = 67/193 (34.72%), Postives = 96/193 (49.74%), Query Frame = 3
Query:   69 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAY 644
            RY+V ++RRREGKTDY  R++LI   K        R VVR T+  + AQI+     GD VLA+A + EL + +G +    N +AAY TGLL+  +           E  VE                  A+LD+GL +   G+RV+ ALKG++D GL++P SE  F          D  +  ++I G   + Y
Sbjct:    6 RYKVAFRRRREGKTDYHQRLKLIVSRKP-------RLVVRRTSSQVIAQILVTRPEGDKVLAAATSAELAKTFGYKGSGKNTSAAYLTGLLIGYKA---------QEAGVE-----------------EAILDMGLRENRAGSRVYAALKGAVDSGLEVPCSEDVFPS--------DDRIRGEHIAGNTASKY 157          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_METMA (50S ribosomal protein L18P OS=Methanosarcina mazei GN=rpl18p PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 7.461e-18
Identity = 66/207 (31.88%), Postives = 101/207 (48.79%), Query Frame = 3
Query:   69 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEPEKYSLT 689
            RY+V ++RRREG+T+Y  R++L+   ++       R VVR + +++  Q+++ +  GDI  +SA + EL +YG      N  AAY TGLL     LK L+    YEG +                     LD+GL  ++ G+RV+ ALKG +D G +IP S   F    +             I G H+A Y +    D PE++  T
Sbjct:    6 RYKVPFRRRREGRTNYHLRLKLLLSGQD-------RVVVRKSARNVQIQLLAPTPEGDITYSSAVSSELAKYGYTGATGNTTAAYLTGLLFG---LKSLQKG--YEGGI---------------------LDIGLQASSAGSRVYAALKGIVDSGFEIPCSSDVFPSDER-------------IRGEHIAEYREE-SSDLPEQFEAT 165          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_METS5 (50S ribosomal protein L18P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.744e-18
Identity = 64/208 (30.77%), Postives = 93/208 (44.71%), Query Frame = 3
Query:   57 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEPEKY 680
            A+   Y+VKY+RRREGKT+Y  R   +    +       R VVR TNK +  Q +     GDI +A+A++ EL ++G +    N  A Y TG L   R        A+  G   A+                   D+GL   T G R+F  LKG +D G+ +P                D  V+   + G H+A Y K L +++P+KY
Sbjct:    2 AHGPNYKVKYRRRREGKTNYYRRYTYVLNRSD-------RVVVRLTNKYVIVQFVKFDPKGDITVAAAHSRELMKFGWKGDENNSTACYLTGYLAGLR--------AKKAGMTSASA------------------DLGLFTPTKGARIFYVLKGVIDSGVKVPMG--------------DVGVNNDRLAGKHIAEYAKKLEQEDPDKY 162          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_PYRAB (50S ribosomal protein L18P OS=Pyrococcus abyssi GN=rpl18p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.273e-17
Identity = 71/213 (33.33%), Postives = 100/213 (46.95%), Query Frame = 3
Query:   57 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEPEKYSLTF 692
            A+  RY+V ++RRREGKT+YR R++L+   K        R VVR +     AQII     GD  L SA+  EL R +G +    N  +AY  GLL+  +  K           +E                  A+LD+GL     G+ VF  LKG++D GL++PHS + F            E +R  I G H+A Y + L E + EK+   F
Sbjct:    2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKK---------AGIE-----------------EAILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIF-----------PEDYR--IRGEHIAEYARMLKEQDEEKFRRQF 168          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_NATPD (50S ribosomal protein L18P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.273e-17
Identity = 62/196 (31.63%), Postives = 89/196 (45.41%), Query Frame = 3
Query:   69 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTL 656
            RY V  +RRRE +T+Y  R+RL+   K        R V R +N    AQ++     GD  +ASA + +L  +G E    N  AAY TGLL  +R ++               G D             A+LD+GL   T GN+VF   +G +D GL++PH+E  FA + +               G H+A Y + L
Sbjct:    6 RYTVPMRRRREARTNYHQRLRLLKSGKP-------RLVARKSNNQTKAQLVVTGPQGDETVASATSADLEAFGWEAPTGNLPAAYLTGLLAGKRAIE--------------AGLD------------EAVLDIGLNTATPGNKVFAVQEGVIDAGLEVPHNEDVFADWQRTR-------------GAHIAEYAEQL 155          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_PYRFU (50S ribosomal protein L18P OS=Pyrococcus furiosus GN=rpl18p PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.662e-17
Identity = 71/213 (33.33%), Postives = 99/213 (46.48%), Query Frame = 3
Query:   57 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEPEKYSLTF 692
            A+  RY+V ++RRREGKT+YR R++L+   K        R VVR +     AQII     GD  L SA+  EL R +G +    N  +AY  GLL+  +        A+  G  E                  A+LD+GL     G+ VF  LKG++D GL++PHS + F    +             I G H+A Y K L E + EK+   F
Sbjct:    2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYK--------AKQAGIEE------------------AILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFPDEYR-------------IRGEHIAEYAKMLKEQDEEKFRRQF 168          
The following BLAST results are available for this feature:
BLAST of EY735932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
RL18_STAMF1.151e-1835.4150S ribosomal protein L18P OS=Staphylothermus mari... [more]
RL18_THESM1.503e-1833.3350S ribosomal protein L18P OS=Thermococcus sibiric... [more]
RL18_METAC1.963e-1832.3750S ribosomal protein L18P OS=Methanosarcina aceti... [more]
RL18_METBF4.374e-1831.4050S ribosomal protein L18P OS=Methanosarcina barke... [more]
RL18_UNCMA7.461e-1834.7250S ribosomal protein L18P OS=Uncultured methanoge... [more]
RL18_METMA7.461e-1831.8850S ribosomal protein L18P OS=Methanosarcina mazei... [more]
RL18_METS59.744e-1830.7750S ribosomal protein L18P OS=Metallosphaera sedul... [more]
RL18_PYRAB1.273e-1733.3350S ribosomal protein L18P OS=Pyrococcus abyssi GN... [more]
RL18_NATPD1.273e-1731.6350S ribosomal protein L18P OS=Natronomonas pharaon... [more]
RL18_PYRFU1.662e-1733.3350S ribosomal protein L18P OS=Pyrococcus furiosus ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-007-H03-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735932 ID=EY735932; Name=EY735932; organism=Citrus sinensis; type=EST; length=850bp
CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGCCAAAGCTCAAAAG
TCAAAAGCTTACTTTAAGCGATATCAAGTTAAGTACAAGAGAAGGCGAGA
GGGAAAGACTGACTATCGGGCTAGGATTCGCCTGATCAACCAAGATAAAA
ACAAGTACAACACGCCAAAGTATCGGTTTGTTGTGCGATTCACCAACAAA
GACATCACTGCACAAATTATATCTGCCAGCATAGCCGGGGATATAGTCCT
TGCATCTGCTTATGCCCATGAGCTTCCCCGTTATGGTCTTGAGGTGGGCC
TCACTAATTATGCAGCAGCTTATTGCACTGGACTCCTCTTGGCCCGCCGA
GTCCTGAAAATGCTTGAGATGGATGCTGAGTATGAGGGGAACGTTGAGGC
AACAGGAGAGGACTATTCAGTTGAGCCAACTGAGAACAGGAGGCCTTTCC
GTGCCCTGCTCGATGTTGGTCTTGTGAAAACAACTACTGGTAACCGTGTC
TTTGGCGCTCTTAAGGGTTCATTGGATGGTGGACTTGATATCCCTCACAG
TGAGAAGAGATTTGCTGGATTCAGTAAGGATAGTAAGCAACTTGATGCTG
AAGTTCACCGTAAATACATCTATGGTGGTCATGTTGCTGCCTACATGAAG
ACTTTGATGGAAGATGAGCCAGAAAAGTACAGTCTCACTTTTGTGAATAC
TCCAGAGAGGTATTGAGGCTGATAACCCTGAAAAATTGACAAGAAGGTAA
TGCTGGCCTCGTGCAGACCCCTACCCGATAAATCCGAGAGGAACCTCCAC
CGACCCCAGAAGTAAACCTTCAAGAAATCGCTTTAGGGGATGGAGGCGGC
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