EY735932

Overview
NameEY735932
Unique NameEY735932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_HALLT (50S ribosomal protein L18P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.662e-17
Identity = 64/201 (31.84%), Postives = 93/201 (46.27%), Query Frame = 3
Query:   69 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEP 671
            RY+V  +RRRE +TDY  R+RL+   K        R V R +N  + AQ+++    GD   A+A + EL  YG +    N  +AY TG L   R +     DA  +                      A+LD+GL   T GN+ F   +G++D GL+IPH++   A +S+               G H+AAY + L  DEP
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARVSNAHVRAQLVTPGSDGDETHAAASSEELGEYGWDAPTGNLPSAYLTGYLAGARAV-----DAGLD---------------------EAVLDIGLNTATPGNKTFAVQEGAIDAGLEIPHNDDVLADWSRTR-------------GEHIAAYAEQL--DEP 158          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_THEON (50S ribosomal protein L18P OS=Thermococcus onnurineus (strain NA1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.171e-17
Identity = 71/213 (33.33%), Postives = 100/213 (46.95%), Query Frame = 3
Query:   57 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEPEKYSLTF 692
            A+  RY+V ++RRREGKT+Y  R+ L+   K        R VVR +     AQI+     GD  + SA+  EL R +G +    N  +AY  GLL+  +  K               G D             A+LD+GL   T G+ VF  LKG++D GL++PHSE           ++  E +R  I G H+A Y K L E++  KY   F
Sbjct:    2 AHGPRYRVPFRRRREGKTNYHKRLALLKSGKP-------RLVVRKSLNHHIAQIVVYDPKGDKTIVSAHTRELMRDFGWKGHGGNTPSAYLLGLLIGYKAKK--------------AGID------------EAILDIGLHPPTRGSSVFAVLKGAVDAGLNVPHSE-----------EIYPEDYR--ITGEHIANYAKALKEEDEGKYRKQF 168          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_THEGJ (50S ribosomal protein L18P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.171e-17
Identity = 70/209 (33.49%), Postives = 100/209 (47.85%), Query Frame = 3
Query:   69 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEPEKYSLTF 692
            RY+V ++RRREGKT+Y  R++L+        + K R VVR +     AQII  +  GD  + SA+  EL R +G +    N  +AY  GLL+  +  K           +E                  A+LD+GL   T G+ VF  LKG++D GL++PHSE+ F            E +R  I G HVA Y K L +++   Y   F
Sbjct:    6 RYRVPFRRRREGKTNYHKRLKLL-------KSKKPRLVVRKSLNHHIAQIIVYNPKGDRTIVSAHTRELIRDFGWKGHTGNTPSAYLLGLLIGYKAKK---------AGIE-----------------EAILDIGLHPPTRGSSVFAVLKGAVDAGLNVPHSEEIF-----------PEDYR--IRGEHVAEYAKALKQEDETLYRKQF 168          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_HALWD (50S ribosomal protein L18P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.171e-17
Identity = 64/201 (31.84%), Postives = 92/201 (45.77%), Query Frame = 3
Query:   69 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEP 671
            RY+V  +RRRE +TDY  R+RL+   K        R V R +N+ + AQ+I+    GD    +A +  L  YG E    N  +AY TG L   R ++               G D             A+LD+GL   T GN+VF   +G++D G+ IPH+E   A +S++              G H+AAY +    DEP
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARVSNRHVRAQLITPGPDGDETHVAASSEHLSEYGWEAPTGNLPSAYLTGYLAGMRAIE--------------AGLD------------EAVLDIGLNTATPGNKVFVVQEGAIDAGVSIPHNESVLADWSRNR-------------GEHIAAYAE--QRDEP 158          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_PYRKO (50S ribosomal protein L18P OS=Pyrococcus kodakaraensis GN=rpl18p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.836e-17
Identity = 71/213 (33.33%), Postives = 102/213 (47.89%), Query Frame = 3
Query:   57 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEPEKYSLTF 692
            A+  RY+V ++RRREGKT+Y  R++L+        + K R VVR T     AQI+     GD  L SA+  EL R +G +    N  +AY  GLL+  +        A+  G  E                  A+LD+GL   T G+ +F  LKG++D GL++PHSE           ++  E +R  I G H+A Y K L E++   Y   F
Sbjct:    2 AHGPRYRVPFRRRREGKTNYHKRLKLL-------KSKKPRLVVRKTLNHHIAQIVVYDPKGDKTLVSAHTMELMRDFGWKGHGGNTPSAYLLGLLIGYK--------AKQAGIEE------------------AILDIGLHPPTRGSSIFAVLKGAVDAGLNVPHSE-----------EIYPEDYR--INGEHIANYAKALKEEDEALYRKQF 168          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_IGNH4 (50S ribosomal protein L18P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.836e-17
Identity = 70/215 (32.56%), Postives = 98/215 (45.58%), Query Frame = 3
Query:   69 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEPEKYSLTFVNTPER 710
            RY+V  +RRREGKT+Y  R  +    K        RFVVR +NK +  Q+I  +  GD V+A+A++ EL + YG +    +  A Y TG+L A R  K               G  Y+V             D+GL K T G RVF A+K + D GL++P                D       I G H+A+Y ++L  + PE+Y   F    ER
Sbjct:    6 RYKVPRRRRREGKTNYYKRYTMALSRKP-------RFVVRKSNKYVWVQVIEFAPEGDKVIAAAHSKELEKKYGWKGYGNSLPAVYLTGMLAALRAKK--------------AGIQYAVP------------DIGLHKPTKGARVFAAIKAANDVGLEVPVG--------------DVVPDESRIRGEHIASYAESLKNENPEEYQRRFAKLLER 173          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_PYRHO (50S ribosomal protein L18P OS=Pyrococcus horikoshii GN=rpl18p PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.316e-17
Identity = 68/213 (31.92%), Postives = 100/213 (46.95%), Query Frame = 3
Query:   57 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEPEKYSLTF 692
            A+  RY+V ++RRREGKT+YR R++L+   K        R VVR +     AQII     GD  L SA+  EL R +G +    N  +AY  GLL+  +  K           +E                  A+LD+GL     G+ +F  LKG++D GL++PHS + F            E +R  I G H+A Y + L E + +++   F
Sbjct:    2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKK---------AGIE-----------------EAILDIGLHPPVRGSSIFAVLKGAIDAGLNVPHSPEIF-----------PEDYR--IRGEHIAEYARMLKEQDEDRFRRQF 168          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_METST (50S ribosomal protein L18P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.316e-17
Identity = 61/199 (30.65%), Postives = 94/199 (47.24%), Query Frame = 3
Query:   72 YQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDE 668
            Y+V++KRRREGKT+Y  R +L++ DK        R VVR T+     Q++     GD  L SA +  L  +G      N +AAY TG L  ++ L                 E Y             +LD+G+  +  G +++  LKG+LD GL IPH++   +   +DS+          I G H+A Y +++ +DE
Sbjct:    7 YKVQFKRRREGKTNYNKRYKLVDLDKT-------RMVVRITSNHTITQLVKIGENGDETLVSATSKNLKEFGWLGNGKNTSAAYLTGYLFGKKAL----------------NEGYD----------ETILDIGVQPSIKGTKIYAVLKGALDAGLYIPHND---SILPEDSR----------IRGEHIAQYAESMDDDE 159          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_SULSO (50S ribosomal protein L18P OS=Sulfolobus solfataricus GN=rpl18p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.838e-16
Identity = 65/208 (31.25%), Postives = 91/208 (43.75%), Query Frame = 3
Query:   72 YQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMEDEPEKYSLTF 692
            Y+VK +RRREGKT+Y  R   +   +        RF+VR TNK +  QI      GDI++ASA++ EL  ++G +    N  AAY TG L   R +K                          R     + D+GL   + GNRVF  +KG++D GL IP                D  +    I G H+A Y + L  +  + YS  F
Sbjct:   10 YKVKPRRRREGKTNYYKRYVYVISKQT-------RFIVRITNKYVIVQIAKIDPKGDIMIASAHSAELAKKFGWKGDENNTPAAYLTGYLAGLRAIK--------------------------RGVTECVADIGLHVPSKGNRVFYVIKGAIDAGLKIPIG--------------DISIENDRIKGEHIAKYAEKLKSENSDLYSKLF 170          
BLAST of EY735932 vs. ExPASy Swiss-Prot
Match: RL18_DESK1 (50S ribosomal protein L18P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.400e-16
Identity = 66/200 (33.00%), Postives = 95/200 (47.50%), Query Frame = 3
Query:   69 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYGGHVAAYMKTLMED 665
            RY+V  +RRREGKT+Y  R R+I            RF+VR T   I  Q+ +A   GD+++A+A+++EL  R+G + G  N +AAY TGLL A   L+ LE   EY                       A+ D+GL +   G  VF A+K + D GL +P                +     + I G H+A+Y K L E+
Sbjct:    6 RYKVPRRRRREGKTNYYKRYRMIVSGHP-------RFIVRKTLNYIWVQVATARPEGDVIIAAAHSNELRKRFGWKAGTCNTSAAYLTGLLAA---LRALEKGVEY-----------------------AVPDIGLHRPVKGALVFAAIKAANDAGLKVPMGG-------------EVAPSEERIRGEHIASYAKILREN 159          
The following BLAST results are available for this feature:
BLAST of EY735932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
RL18_HALLT1.662e-1731.8450S ribosomal protein L18P OS=Halorubrum lacusprof... [more]
RL18_THEON2.171e-1733.3350S ribosomal protein L18P OS=Thermococcus onnurin... [more]
RL18_THEGJ2.171e-1733.4950S ribosomal protein L18P OS=Thermococcus gammato... [more]
RL18_HALWD2.171e-1731.8450S ribosomal protein L18P OS=Haloquadratum walsby... [more]
RL18_PYRKO4.836e-1733.3350S ribosomal protein L18P OS=Pyrococcus kodakarae... [more]
RL18_IGNH44.836e-1732.5650S ribosomal protein L18P OS=Ignicoccus hospitali... [more]
RL18_PYRHO6.316e-1731.9250S ribosomal protein L18P OS=Pyrococcus horikoshi... [more]
RL18_METST6.316e-1730.6550S ribosomal protein L18P OS=Methanosphaera stadt... [more]
RL18_SULSO1.838e-1631.2550S ribosomal protein L18P OS=Sulfolobus solfatari... [more]
RL18_DESK12.400e-1633.0050S ribosomal protein L18P OS=Desulfurococcus kamc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-007-H03-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735932 ID=EY735932; Name=EY735932; organism=Citrus sinensis; type=EST; length=850bp
CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGCCAAAGCTCAAAAG
TCAAAAGCTTACTTTAAGCGATATCAAGTTAAGTACAAGAGAAGGCGAGA
GGGAAAGACTGACTATCGGGCTAGGATTCGCCTGATCAACCAAGATAAAA
ACAAGTACAACACGCCAAAGTATCGGTTTGTTGTGCGATTCACCAACAAA
GACATCACTGCACAAATTATATCTGCCAGCATAGCCGGGGATATAGTCCT
TGCATCTGCTTATGCCCATGAGCTTCCCCGTTATGGTCTTGAGGTGGGCC
TCACTAATTATGCAGCAGCTTATTGCACTGGACTCCTCTTGGCCCGCCGA
GTCCTGAAAATGCTTGAGATGGATGCTGAGTATGAGGGGAACGTTGAGGC
AACAGGAGAGGACTATTCAGTTGAGCCAACTGAGAACAGGAGGCCTTTCC
GTGCCCTGCTCGATGTTGGTCTTGTGAAAACAACTACTGGTAACCGTGTC
TTTGGCGCTCTTAAGGGTTCATTGGATGGTGGACTTGATATCCCTCACAG
TGAGAAGAGATTTGCTGGATTCAGTAAGGATAGTAAGCAACTTGATGCTG
AAGTTCACCGTAAATACATCTATGGTGGTCATGTTGCTGCCTACATGAAG
ACTTTGATGGAAGATGAGCCAGAAAAGTACAGTCTCACTTTTGTGAATAC
TCCAGAGAGGTATTGAGGCTGATAACCCTGAAAAATTGACAAGAAGGTAA
TGCTGGCCTCGTGCAGACCCCTACCCGATAAATCCGAGAGGAACCTCCAC
CGACCCCAGAAGTAAACCTTCAAGAAATCGCTTTAGGGGATGGAGGCGGC
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