EY735893

Overview
NameEY735893
Unique NameEY735893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735893 vs. ExPASy Swiss-Prot
Match: ZN544_HUMAN (Zinc finger protein 544 OS=Homo sapiens GN=ZNF544 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 49/149 (32.89%), Postives = 69/149 (46.31%), Query Frame = 2
Query:   23 CGKKFLDSSKLKRHFLIHTGERDYVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASH-----HEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPG 454
            CGK F  SSKL  H  IHTGE+ Y C    CGK+F  + NL  H + H+ E  + C +  CGK ++  Y+L  H  +H     +E N   +    +T   R  +            + E+PY C    C KA+     L +H +R H G
Sbjct:  525 CGKSFSQSSKLITHQRIHTGEKPYQCIE--CGKSFRWNSNLVIHQRIHTGEKPYDCTH--CGKSFSQSYQLVAHKRTHTGEKPYECNECGKAFNRSTQLIRHLQI----------HTGEKPYKC--NQCNKAFARSSYLVMH-QRTHTG 656          
BLAST of EY735893 vs. ExPASy Swiss-Prot
Match: ZN506_HUMAN (Zinc finger protein 506 OS=Homo sapiens GN=ZNF506 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 47/141 (33.33%), Postives = 65/141 (46.10%), Query Frame = 2
Query:   23 CGKKFLDSSKLKRHFLIHTGERDYVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASH--HEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLK 439
            CGK F+ SS L +H +IHTGE+ Y C  E CGKAF+   NL  H + H+ +  + C   +CGK +     L  H  +H   +     E  +  T    +T+      G       E+PY C  E C KA+     L  H K
Sbjct:  290 CGKAFISSSTLTKHEIIHTGEKPYKC--EECGKAFNRSSNLTKHKRIHTGDVPYKC--DECGKTFTWYSSLSKHKRAHTGEKPYKCEECGKAFTAFSTLTEHKIIHTG-------EKPYKC--EECGKAFNWSSALNKHKK 417          
BLAST of EY735893 vs. ExPASy Swiss-Prot
Match: ZG57_XENLA (Gastrula zinc finger protein XlCGF57.1 (Fragment) OS=Xenopus laevis PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 44/141 (31.21%), Postives = 64/141 (45.39%), Query Frame = 2
Query:   23 CGKKFLDSSKLKRHFLIHTGERDYVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASH--HEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLK 439
            CGK F+  S+L  H  IHTGE  ++C    CGK FS    L++HMKTH+ E    C   +CGK +A    L  H+  H   +  +  E  ++      +    K   G       E+P+ C    C K +  +  L  H+K
Sbjct:   11 CGKGFIKKSRLVTHMKIHTGETHFICTE--CGKGFSQKGILQTHMKTHTGEKPFTC--TECGKNFAQITTLLRHLTIHTGEKPFSCTECGKHFAHKGHLVSHMKTHTG-------EKPFTC--TECGKHFAQKGHLVSHMK 138          
BLAST of EY735893 vs. ExPASy Swiss-Prot
Match: ZFP39_MOUSE (Zinc finger protein 39 OS=Mus musculus GN=Zfp39 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 47/147 (31.97%), Postives = 66/147 (44.90%), Query Frame = 2
Query:   23 CGKKFLDSSKLKRHFLIHTGERDYVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASH--HEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLKREHPGH 457
            C K F   S L  H  +HTG++ Y C  E C KAFS   NL  H KTH+ E  + C    CGK +  +  L  H  +H   +     E  +       + +  +   G        RPYAC  E C K ++H+  L +H +R H G+
Sbjct:  498 CRKTFYSKSHLVIHQKVHTGDKPYEC--EECQKAFSRKSNLTVHQKTHTGEKPYECNV--CGKTFHRQSHLNMHQGTHTGQKPYQCEECGKAFYQKSSLRRHQRNHTG-------SRPYAC--EECRKTFLHKSSLTVH-QRSHTGY 630          
BLAST of EY735893 vs. ExPASy Swiss-Prot
Match: REPI1_HUMAN (Replication initiator 1 OS=Homo sapiens GN=REPIN1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 42/139 (30.22%), Postives = 65/139 (46.76%), Query Frame = 2
Query:   23 CGKKFLDSSKLKRHFLIHTGERDYVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEVPRYATPPERITKTPKPPAGVYGSASSERPYACPYEGCEKAYIHEYKLKLHLK 439
            CGK F   + L  H  +H+GER + C  E CG+ FS   +L +H + H+ +   +C  PDCGK + H    K ++A+H   +   E P       +               + ERPYACP   C++++  +  L  H K
Sbjct:  408 CGKNFGKKTHLVAHSRVHSGERPFAC--EECGRRFSQGSHLAAHRRDHAPDRPFVC--PDCGKAFRH----KPYLAAHRRIHTG-EKPYVCPDCGKAFSQKSNLVSHRRIHTGERPYACP--DCDRSFSQKSNLITHRK 535          
The following BLAST results are available for this feature:
BLAST of EY735893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
ZN544_HUMAN9.473e-1132.89Zinc finger protein 544 OS=Homo sapiens GN=ZNF544 ... [more]
ZN506_HUMAN9.473e-1133.33Zinc finger protein 506 OS=Homo sapiens GN=ZNF506 ... [more]
ZG57_XENLA9.473e-1131.21Gastrula zinc finger protein XlCGF57.1 (Fragment) ... [more]
ZFP39_MOUSE9.473e-1131.97Zinc finger protein 39 OS=Mus musculus GN=Zfp39 PE... [more]
REPI1_HUMAN9.473e-1130.22Replication initiator 1 OS=Homo sapiens GN=REPIN1 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-007-D07-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735893 ID=EY735893; Name=EY735893; organism=Citrus sinensis; type=EST; length=884bp
CACGCGTCCGCGGACGCGTGGGTGTGGAAAGAAATTTTTGGATAGTTCGA
AGTTGAAAAGACACTTTCTTATTCATACTGGAGAAAGAGATTATGTATGT
CCTCATGAAGGCTGTGGTAAGGCATTCTCTTTGGACTTCAACCTGAGATC
ACACATGAAAACACATTCACAAGAAAATTATCACATCTGCCCATACCCAG
ATTGTGGAAAGAGATATGCTCATGAGTACAAGTTAAAGAATCATATTGCA
TCTCACCACGAAAAGAATGCTGCAGTGGAGGTGCCCAGATACGCTACTCC
TCCCGAGAGGATAACAAAAACTCCCAAGCCACCTGCTGGGGTTTATGGTT
CTGCATCATCTGAACGTCCTTATGCATGTCCTTATGAAGGGTGTGAAAAG
GCATATATCCATGAATACAAGCTTAAACTCCATCTGAAGCGGGAGCATCC
CGGCCATATGTCTGATGAAAATGCCGAGAATGCCACAACAAATGCTGATA
ATGAGATGGATGAAGGCAGTGACCAAGATGCCTATGCTGGAAAACGTGTT
AATGGCAAAAGTCAAAAACAAAGCCGGGCGAAGCCAAACTTGAAGATGCC
TCCTGCAAAAGTAACGCAACGCAAAAGCTCAACTCCATCTCCTGCCACCT
TGAATGTAGTGAGAAAGNCAACATGGACTCCTANAGAAGAAGTTTACGAG
GAAGAAGATAGTGAAGAAACTGAGGAAGATCGTGACAATGTTGAGGATGG
ATTTANGTACCGGCAAAATAATGAAGATGATGATGAGGAGACTGAGTACG
AAACTGAGCCTATAAAATGTTCCTTCACCCTCTGGGTAGGGCACTTGTAT
GATCTAACCTTACACCAGGTCCCTGGCTCTTTAT
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