EY735766

Overview
NameEY735766
Unique NameEY735766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735766 vs. ExPASy Swiss-Prot
Match: TPC1_CANGA (Mitochondrial thiamine pyrophosphate carrier 1 OS=Candida glabrata GN=TPC1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.551e-11
Identity = 57/227 (25.11%), Postives = 101/227 (44.49%), Query Frame = 3
Query:  111 TVKPFVNGGASGMLATCVIQPIDMIKVRIQL-GQGSAGTVTKTMLKNEGFGAFYKGLSAGLLRQATYTTARLGSFRILTNKAIEANDGKPLPLYQKALCGLTAGAIGASVGSPADLALIRMQADATLPAAQRRNYTNAFQALYRIVADEGVLALWKGAGPTVVRAMALNMGMLASYDQSVEFF-KDACGLSELP---TVIG--ASTVSGFFASACSLPLDYVKTQIQ 770
            T    V G  SG+ A   I P+D +K+++Q+        V   +LK EG   F+KG   G +    Y  A+ GS+  + +      D    P     L G  AG   +    P D+   R  A++     + R+       +  I + EG++  + G G +++  + LN  ++    +S++ F ++   LS+     T++   A  +SGF +   + PLD V+ +IQ
Sbjct:   15 TTNSLVAGSLSGLFARTCIAPLDTVKIKLQVTPHNKNANVLINILKREGIRGFWKGNVPGSIMYIIYGGAQFGSYTYIGSFLRGGLDLNISPQLYSCLVGSLAGMTSSLASYPFDVLRTRFAANSQGQLIKLRD------EIMAIWSHEGLMGFFSGCGSSMIN-IGLNTAIMFGVYESIKIFTEERSKLSDRRDPFTLLNELAGPISGFTSKLATFPLDTVRRRIQ 234          
BLAST of EY735766 vs. ExPASy Swiss-Prot
Match: OAC1_SCHPO (Mitochondrial oxaloacetate transport protein OS=Schizosaccharomyces pombe GN=oac1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.551e-11
Identity = 64/235 (27.23%), Postives = 97/235 (41.28%), Query Frame = 3
Query:  114 VKPFVNGGASGMLATCVIQPIDMIKVRIQLGQG-------------SAGTVTKTMLKNEGFGAFYKGLSAGLLRQATYTTARLGSFRIL--TNKAIEANDGKPLPLYQKALCGLTAGAIGASVGSPADLALIRMQA-DATLPAAQRRNYTNAFQALYRIVADEGVLALWKGAGPTVVRAMALNMGMLASYDQSVEFFKDACGLSE-LPTVIGASTVSGFFASACSLPLDYVKTQI 767
            V  F++GG +   A  +  P ++IK R QL QG             S G     + ++EG     +GL    + Q      RLG +  +  T      +D K   L      G  +G  GA  GSP  L   RMQ+     P  Q+  Y + F A  RI+ + GV  L+ GA   ++R ++ +   L  Y+ +    +    L E +   + AS VSGF         D V T++
Sbjct:   24 VSGFLSGGLAACGAVTLTNPFEVIKTRFQL-QGQLTKLDPSKRIYKSVGQAFSLIARHEGIRGLQRGLGTAYVYQICLNGCRLGFYEPIRRTLNTWFLDDPKGNKLAINVASGAGSGLCGALFGSPFFLVKTRMQSYSPKFPVGQQYGYKHIFNAFSRIIKENGVKGLFVGADAAILRTVSGSSVQLPIYNWAKRMIEHYNLLEEGMIKHLTASAVSGFGVCCTMQIFDTVMTRM 257          
The following BLAST results are available for this feature:
BLAST of EY735766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
TPC1_CANGA8.551e-1125.11Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
OAC1_SCHPO8.551e-1127.23Mitochondrial oxaloacetate transport protein OS=Sc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-004-G07-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735766 ID=EY735766; Name=EY735766; organism=Citrus sinensis; type=EST; length=829bp
CACGCGTCCGAATCTTCTTTCTCTCTCTCTCTAGCCAGCTTAAGCTTTCT
TGGATCCAAAAGGAAAAAAATGGGAGAGGAGAAGAACCACAATCAGCTGG
TGTATGGCCCACCGTTAAGCCTTTTGTCAATGGTGGTGCCTCTGGTATGC
TTGCCACCTGTGTCATTCAGCCCATCGATATGATCAAGGTGAGAATTCAG
CTGGGCCAGGGATCCGCCGGTACTGTGACAAAGACTATGCTTAAGAATGA
GGGTTTTGGTGCCTTTTACAAGGGGTTGTCTGCTGGACTGCTCAGGCAAG
CTACATATACCACTGCTCGTCTTGGATCATTTAGGATCTTGACAAACAAA
GCAATTGAAGCCAATGACGGGAAGCCTCTTCCATTGTATCAGAAAGCCTT
GTGTGGGCTAACTGCTGGTGCTATTGGAGCTTCTGTTGGTAGTCCAGCAG
ATTTGGCACTTATCCGTATGCAGGCTGATGCCACACTACCTGCTGCTCAA
CGCCGCAATTACACTAATGCCTTCCAAGCTCTTTATCGTATTGTTGCAGA
TGAAGGGGTCTTAGCACTTTGGAAAGGTGCAGGTCCTACTGTTGTGAGAG
CTATGGCATTGAACATGGGCATGCTTGCCTCCTACGATCAAAGTGTTGAG
TTTTTCAAAGATGCGTGTGGCTTGTCTGAACTTCCTACAGTAATCGGGGC
GAGTACAGTGTCAGGGTTCTTTGCTTCAGCTTGCAGTTTACCCTTGGATT
ATGTCAAAACACAAATTCAGAAAATGCACCCAGATGCTCAAGGAAAGTAT
CCATACCAGGCTCTATGGACTGTGCCATA
back to top