EY735730

Overview
NameEY735730
Unique NameEY735730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735730 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.275e-71
Identity = 125/176 (71.02%), Postives = 148/176 (84.09%), Query Frame = 3
Query:   27 SMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKP 554
            ++ISS  V T NRA + QA++  PFTGLKSS+ FP TKK NNDITSI SNG RV CM+VWPP G KKFETLSYLPPL+DE LLKE+ YLLR GW+PC+EFELEKG+V+R+++SSPGYYDGRYWTMW+LP++G TDA QVLKEV E   EYP +F+RIIGFDN RQVQCISF+A+ P
Sbjct:    2 ALISSAAVTTINRAPV-QANLATPFTGLKSSAGFPVTKK-NNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLKEVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTP 175          
BLAST of EY735730 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.275e-71
Identity = 130/181 (71.82%), Postives = 148/181 (81.77%), Query Frame = 3
Query:   18 MASSMISS--TTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKP 554
            MASSM+S+  T VA A  +  AQA+MVAPF GLKS ++FP T+K+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLSD  LL ++ YLL  GWIPC+EFELE  +VYRE+H SPGY DGRYWTMWKLPMYGCTD  QVL EV E  K YP +F+RIIGFDNKRQVQC+SF+A KP
Sbjct:    1 MASSMMSNAATAVAVAATSGGAQANMVAPFNGLKSIASFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPTAFIRIIGFDNKRQVQCVSFIAYKP 180          
BLAST of EY735730 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.971e-71
Identity = 124/174 (71.26%), Postives = 150/174 (86.21%), Query Frame = 3
Query:   39 STTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 560
            S+TVAT +RA+ AQA+MVAPFTGLKS++AFPATKK N D +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E  KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:    5 SSTVATVSRAAPAQANMVAPFTGLKSNAAFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 177          
BLAST of EY735730 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.880e-71
Identity = 125/179 (69.83%), Postives = 149/179 (83.24%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKP 554
            MASS++S+     A   + AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM VWPP G+KKFETLSYLPPLS+E+LLKE+ YLL +GW+PCLEFE   G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E  K YP +F+RIIGFDN RQVQC+SF+A KP
Sbjct:    1 MASSLMSNAATTMAAATTTAQANMVAPFNGLKSISAFPVTRK-NNDITSVASNGGRVQCM-VWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 177          
BLAST of EY735730 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 6.618e-71
Identity = 127/179 (70.95%), Postives = 148/179 (82.68%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKP 554
            MASSM++ST  A   R   AQ +MVAPF GL+SS AFPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+PC+EF  E G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E  K YP  FVRIIGFDNKRQVQCISF+A KP
Sbjct:    1 MASSMMAST--AAVARVGPAQTNMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY735730 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 6.618e-71
Identity = 128/179 (71.51%), Postives = 147/179 (82.12%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKP 554
            MAS M   +  A   R + AQASMVAPFTGLKS SAFP TKK+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YLL +GW+PCLEFE   G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E  K YP +F RIIGFDN RQVQCISF+A KP
Sbjct:    1 MASMM---SNAAVVGRTTPAQASMVAPFTGLKSVSAFPVTKKSN-DITSIASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFTRIIGFDNVRQVQCISFIAYKP 175          
BLAST of EY735730 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 8.643e-71
Identity = 121/174 (69.54%), Postives = 148/174 (85.06%), Query Frame = 3
Query:   39 STTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 560
            S++VAT +R + AQA+MVAPFTGLKS++AFP TKK N D +++ SNGGRVQCMKVWPP GLKK+ETLSYLPPL++  L KE+ YLLR  W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E  KEYP +++RIIGFDN RQVQCI F+A++P G
Sbjct:    5 SSSVATVSRTAPAQANMVAPFTGLKSNAAFPTTKKAN-DFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMFIASRPDG 177          
BLAST of EY735730 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.474e-70
Identity = 123/174 (70.69%), Postives = 149/174 (85.63%), Query Frame = 3
Query:   39 STTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 560
            S+TVAT +RA+ AQA+MVAPFTGLKS+ AFPATKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E  KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:    5 SSTVATVSRAAPAQANMVAPFTGLKSNVAFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPEG 177          
BLAST of EY735730 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 7.317e-70
Identity = 125/179 (69.83%), Postives = 149/179 (83.24%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKP 554
            MASSM++ST  A   RA  AQ++MVAPF GL+SS AFPAT+K N +++++ SNGG+V CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+PC+EF  E G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E  K YP  FVRIIGFDNKRQVQCISF+A KP
Sbjct:    1 MASSMMAST--AAVARAGPAQSNMVAPFNGLRSSVAFPATRKANKNLSTLPSNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY735730 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 4.743e-69
Identity = 123/179 (68.72%), Postives = 148/179 (82.68%), Query Frame = 3
Query:   18 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKP 554
            MASS    ++VATA RA+ AQASMVAPF GLKS+SAFP T+K    ++++ SNGGRVQCMKVWP  GLKKFETLSYLP LS E+LLK+I YL+R+GW+PCLEF LE G+V R+++ SPGYYDGRYWTMWKLPM+GCTDA QV+KE  E  KEYP +F+R+IGFDN RQVQC+SF+  KP
Sbjct:    1 MASSATMLSSVATAARAAPAQASMVAPFVGLKSASAFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
The following BLAST results are available for this feature:
BLAST of EY735730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
RBS_TRIRP2.275e-7171.02Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_AMAHP2.275e-7171.82Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS4_FLAPR2.971e-7171.26Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS5_MESCR3.880e-7169.83Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS6_LEMGI6.618e-7170.95Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS2_MESCR6.618e-7171.51Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_HELAN8.643e-7169.54Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_FLAPR1.474e-7070.69Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS2_LEMGI7.317e-7069.83Ribulose bisphosphate carboxylase small chain SSU2... [more]
RBS3_FRIAG4.743e-6968.72Ribulose bisphosphate carboxylase small chain 3, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-004-C04-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735730 ID=EY735730; Name=EY735730; organism=Citrus sinensis; type=EST; length=781bp
CCACGCGTCCGGTACCAATGGCTTCCTCAATGATCTCATCGACCACCGTT
GCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTT
CACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACA
ATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAG
GTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCC
GCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCT
CCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTAC
CGTGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAAT
GTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGG
AGGTTGGGGAGGTCCANAAGGAATACCCACATTCATTCGTCCGAATTATC
GGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAA
GCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAA
TATTGTTGATTATTATTATGTGTAACCCCCATAATGATCATTCGATCAAT
GGGGGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCT
CAAACTTTTTTGGGTTTCTCCCCGACTTTGGCTTTTTTTGTATATATATT
TAAATAATGGAATCTTTGTTTCAGTTCATAG
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