EY735706

Overview
NameEY735706
Unique NameEY735706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4_BOMMO (40S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.704e-33
Identity = 67/91 (73.63%), Postives = 76/91 (83.52%), Query Frame = 1
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT  EV+ I+ QR + VD KVRTD TYPAGFM + S
Sbjct:    1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 91          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4_YEAST (40S ribosomal protein S4 OS=Saccharomyces cerevisiae GN=RPS4A PE=1 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 1.950e-32
Identity = 68/87 (78.16%), Postives = 73/87 (83.91%), Query Frame = 1
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFM 384
            MARG KKHLKRL AP HW+LDKL G +AP+PS+GPHK RE LPLI+ LRNRLKYAL  REV AILMQRHV VD KVRTD TYPAGFM
Sbjct:    1 MARGPKKHLKRLAAPHHWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFM 87          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4_ICTPU (40S ribosomal protein S4 OS=Ictalurus punctatus GN=rps4 PE=2 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 7.412e-32
Identity = 68/91 (74.73%), Postives = 74/91 (81.32%), Query Frame = 1
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + VD KVRTD TYPAGFM + S
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKVDGKVRTDITYPAGFMDVIS 91          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4_XENTR (40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 9.680e-32
Identity = 67/91 (73.63%), Postives = 74/91 (81.32%), Query Frame = 1
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFM + S
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4_XENLA (40S ribosomal protein S4 OS=Xenopus laevis GN=rps4 PE=2 SV=4)

HSP 1 Score: 137.502 bits (345), Expect = 9.680e-32
Identity = 67/91 (73.63%), Postives = 74/91 (81.32%), Query Frame = 1
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFM + S
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4_CRIGR (40S ribosomal protein S4 OS=Cricetulus griseus GN=RPS4 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 9.680e-32
Identity = 67/91 (73.63%), Postives = 74/91 (81.32%), Query Frame = 1
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFM + S
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4_CHICK (40S ribosomal protein S4 OS=Gallus gallus GN=RPS4 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 9.680e-32
Identity = 67/91 (73.63%), Postives = 74/91 (81.32%), Query Frame = 1
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFM + S
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4_BOVIN (40S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=2 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 9.680e-32
Identity = 67/91 (73.63%), Postives = 74/91 (81.32%), Query Frame = 1
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFM + S
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4Y1_MONDO (40S ribosomal protein S4, Y isoform 1 OS=Monodelphis domestica GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 9.680e-32
Identity = 67/91 (73.63%), Postives = 74/91 (81.32%), Query Frame = 1
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFM + S
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4X_RAT (40S ribosomal protein S4, X isoform OS=Rattus norvegicus GN=Rps4x PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 9.680e-32
Identity = 67/91 (73.63%), Postives = 74/91 (81.32%), Query Frame = 1
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFM + S
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91          
The following BLAST results are available for this feature:
BLAST of EY735706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RS4_BOMMO6.704e-3373.6340S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE... [more]
RS4_YEAST1.950e-3278.1640S ribosomal protein S4 OS=Saccharomyces cerevisi... [more]
RS4_ICTPU7.412e-3274.7340S ribosomal protein S4 OS=Ictalurus punctatus GN... [more]
RS4_XENTR9.680e-3273.6340S ribosomal protein S4 OS=Xenopus tropicalis GN=... [more]
RS4_XENLA9.680e-3273.6340S ribosomal protein S4 OS=Xenopus laevis GN=rps4... [more]
RS4_CRIGR9.680e-3273.6340S ribosomal protein S4 OS=Cricetulus griseus GN=... [more]
RS4_CHICK9.680e-3273.6340S ribosomal protein S4 OS=Gallus gallus GN=RPS4 ... [more]
RS4_BOVIN9.680e-3273.6340S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=... [more]
RS4Y1_MONDO9.680e-3273.6340S ribosomal protein S4, Y isoform 1 OS=Monodelph... [more]
RS4X_RAT9.680e-3273.6340S ribosomal protein S4, X isoform OS=Rattus norv... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-003-H11-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735706 ID=EY735706; Name=EY735706; organism=Citrus sinensis; type=EST; length=880bp
CCACGCGTCCGCCCACGCGTCCGGAGCTAGCAGCGCTTGTGAGTGCATTT
TTCACTTCGTTTTTGTTTTGCAGGACTGTGACACGCCGTTGGCGAATCCA
AGCTCAGGCTCACGAACACAAAAATGGCGAGAGGTTTGAAGAAACATTTG
AAGAGGCTTAATGCCCCAAAGCACTGGATGCTTGACAAACTTGGTGGAGC
ATTTGCTCCCAAGCCTTCATCTGGGCCACACAAATCAAGGGAGTGTTTGC
CCTTAATTCTTATCTTACGCAACCGCTTGAAGTATGCTCTTACATACCGA
GAAGTCATTGCAATTTTGATGCAACGACATGTGTTGGTTGATGCTAAGGT
TCGCACAGATAAGACTTACCCTGCTGGGTTCATGGGTATGCAGTCCTCAG
CCCATATACTATTATTGCCTTTTATAAATTATCCATGCCTTATTTGTGAG
GAAAATGGAATGTAATAGTAGAATCATTGCTTTTTTGTAGATGCGGGCTC
GAAATCATACTTGTGTTCATGATGATTCCTCCATTTCTGATATCATATTC
CGAATGTGAGCCTCCTTGATTTACTCTTTCTTTAAGAAGTGTTTTAAGAA
TTTTCACTTGTCCTTCTGACTATCAGATGTCGTGTCACTTCCACAGACGA
ATGAGAACTTCCGTCTCCTTTACAACACCACGGGCCGGTTCCCCCTTCAT
CCAATCAGGGATGAAGGAGGCTAGGGTGTGCGTTGAGGCCGCAGATGGCG
CCATCGTCTCTGCATCACCTGATGAGAAAGGATGGTCGGCCCCTTTACAT
TGTCGGGAGGCCGGAGGATGAGGGGGAGAGCGTGCTGGGGTAGGCAGGTT
GTGCCGGAGAACCCGCCCACTCCGCTGCGT
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