EY735706

Overview
NameEY735706
Unique NameEY735706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4X_MOUSE (40S ribosomal protein S4, X isoform OS=Mus musculus GN=Rps4x PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 9.680e-32
Identity = 67/91 (73.63%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFM + S
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91
[Close]
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4X_MESAU (40S ribosomal protein S4, X isoform OS=Mesocricetus auratus GN=RPS4X PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 9.680e-32
Identity = 67/91 (73.63%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFM + S
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91
[Close]
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4X_MACFU (40S ribosomal protein S4, X isoform OS=Macaca fuscata fuscata GN=RPS4X PE=2 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 9.680e-32
Identity = 67/91 (73.63%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFM + S
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91
[Close]
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4X_HUMAN (40S ribosomal protein S4, X isoform OS=Homo sapiens GN=RPS4X PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 9.680e-32
Identity = 67/91 (73.63%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFM + S
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91
[Close]
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4X_FELCA (40S ribosomal protein S4, X isoform OS=Felis catus GN=RPS4X PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 9.680e-32
Identity = 67/91 (73.63%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFM + S
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91
[Close]
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4X_CERAE (40S ribosomal protein S4, X isoform OS=Cercopithecus aethiops GN=RPS4X PE=2 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 9.680e-32
Identity = 67/91 (73.63%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFM + S
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVIS 91
[Close]
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4X_MONDO (40S ribosomal protein S4, X isoform OS=Monodelphis domestica GN=RPS4X PE=2 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 1.651e-31
Identity = 66/91 (72.53%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYP GFM + S
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDTTYPVGFMDVIS 91
[Close]
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4X_DANRE (40S ribosomal protein S4, X isoform OS=Danio rerio GN=rps4x PE=2 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 2.156e-31
Identity = 66/91 (72.53%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYP GFM + S
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPTGFMDVVS 91
[Close]
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4Y1_MACFU (40S ribosomal protein S4, Y isoform 1 OS=Macaca fuscata fuscata GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 2.816e-31
Identity = 66/91 (72.53%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFM + S
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVIS 91
[Close]
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANTR (40S ribosomal protein S4, Y isoform 1 OS=Pan troglodytes GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 3.678e-31
Identity = 66/91 (72.53%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFM + S
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVIS 91
The following BLAST results are available for this feature:
BLAST of EY735706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RS4X_MOUSE9.680e-3273.6340S ribosomal protein S4, X isoform OS=Mus musculu... [more]
RS4X_MESAU9.680e-3273.6340S ribosomal protein S4, X isoform OS=Mesocricetu... [more]
RS4X_MACFU9.680e-3273.6340S ribosomal protein S4, X isoform OS=Macaca fusc... [more]
RS4X_HUMAN9.680e-3273.6340S ribosomal protein S4, X isoform OS=Homo sapien... [more]
RS4X_FELCA9.680e-3273.6340S ribosomal protein S4, X isoform OS=Felis catus... [more]
RS4X_CERAE9.680e-3273.6340S ribosomal protein S4, X isoform OS=Cercopithec... [more]
RS4X_MONDO1.651e-3172.5340S ribosomal protein S4, X isoform OS=Monodelphis... [more]
RS4X_DANRE2.156e-3172.5340S ribosomal protein S4, X isoform OS=Danio rerio... [more]
RS4Y1_MACFU2.816e-3172.5340S ribosomal protein S4, Y isoform 1 OS=Macaca fu... [more]
RS4Y1_PANTR3.678e-3172.5340S ribosomal protein S4, Y isoform 1 OS=Pan trogl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-003-H11-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735706 ID=EY735706; Name=EY735706; organism=Citrus sinensis; type=EST; length=880bp
CCACGCGTCCGCCCACGCGTCCGGAGCTAGCAGCGCTTGTGAGTGCATTT
TTCACTTCGTTTTTGTTTTGCAGGACTGTGACACGCCGTTGGCGAATCCA
AGCTCAGGCTCACGAACACAAAAATGGCGAGAGGTTTGAAGAAACATTTG
AAGAGGCTTAATGCCCCAAAGCACTGGATGCTTGACAAACTTGGTGGAGC
ATTTGCTCCCAAGCCTTCATCTGGGCCACACAAATCAAGGGAGTGTTTGC
CCTTAATTCTTATCTTACGCAACCGCTTGAAGTATGCTCTTACATACCGA
GAAGTCATTGCAATTTTGATGCAACGACATGTGTTGGTTGATGCTAAGGT
TCGCACAGATAAGACTTACCCTGCTGGGTTCATGGGTATGCAGTCCTCAG
CCCATATACTATTATTGCCTTTTATAAATTATCCATGCCTTATTTGTGAG
GAAAATGGAATGTAATAGTAGAATCATTGCTTTTTTGTAGATGCGGGCTC
GAAATCATACTTGTGTTCATGATGATTCCTCCATTTCTGATATCATATTC
CGAATGTGAGCCTCCTTGATTTACTCTTTCTTTAAGAAGTGTTTTAAGAA
TTTTCACTTGTCCTTCTGACTATCAGATGTCGTGTCACTTCCACAGACGA
ATGAGAACTTCCGTCTCCTTTACAACACCACGGGCCGGTTCCCCCTTCAT
CCAATCAGGGATGAAGGAGGCTAGGGTGTGCGTTGAGGCCGCAGATGGCG
CCATCGTCTCTGCATCACCTGATGAGAAAGGATGGTCGGCCCCTTTACAT
TGTCGGGAGGCCGGAGGATGAGGGGGAGAGCGTGCTGGGGTAGGCAGGTT
GTGCCGGAGAACCCGCCCACTCCGCTGCGT
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