EY735706

Overview
NameEY735706
Unique NameEY735706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANPA (40S ribosomal protein S4, Y isoform 1 OS=Pan paniscus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 3.678e-31
Identity = 66/91 (72.53%), Postives = 73/91 (80.22%), Query Frame = 1
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFM + S
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVIS 91          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4Y1_HUMAN (40S ribosomal protein S4, Y isoform 1 OS=Homo sapiens GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 3.678e-31
Identity = 66/91 (72.53%), Postives = 73/91 (80.22%), Query Frame = 1
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFM + S
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVIS 91          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4Y1_GORGO (40S ribosomal protein S4, Y isoform 1 OS=Gorilla gorilla gorilla GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 3.678e-31
Identity = 66/91 (72.53%), Postives = 73/91 (80.22%), Query Frame = 1
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFM + S
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVIS 91          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4C_SCHPO (40S ribosomal protein S4-C OS=Schizosaccharomyces pombe GN=rps4c PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.678e-31
Identity = 65/91 (71.43%), Postives = 73/91 (80.22%), Query Frame = 1
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            M RG KKHLKR+ AP HW+LDKL G +APKPS GPHK+RECLPLI+ LRNRLKYAL  REV AILMQR + VD KVRTD T+P GFM + S
Sbjct:    1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVIS 91          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4B_SCHPO (40S ribosomal protein S4-B OS=Schizosaccharomyces pombe GN=rps4b PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.678e-31
Identity = 65/91 (71.43%), Postives = 73/91 (80.22%), Query Frame = 1
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            M RG KKHLKR+ AP HW+LDKL G +APKPS GPHK+RECLPLI+ LRNRLKYAL  REV AILMQR + VD KVRTD T+P GFM + S
Sbjct:    1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVDGKVRTDSTFPTGFMDVIS 91          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4A_SCHPO (40S ribosomal protein S4-A OS=Schizosaccharomyces pombe GN=rps4a PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 3.678e-31
Identity = 65/91 (71.43%), Postives = 73/91 (80.22%), Query Frame = 1
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            M RG KKHLKR+ AP HW+LDKL G +APKPS GPHK+RECLPLI+ LRNRLKYAL  REV AILMQR + VD KVRTD T+P GFM + S
Sbjct:    1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVIS 91          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4Y2_PANTR (40S ribosomal protein S4, Y isoform 2 OS=Pan troglodytes GN=RPS4Y2 PE=2 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 4.804e-31
Identity = 66/91 (72.53%), Postives = 73/91 (80.22%), Query Frame = 1
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFM + S
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDITYPAGFMDVIS 91          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4Y1_PONPY (40S ribosomal protein S4, Y isoform 1 OS=Pongo pygmaeus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 4.804e-31
Identity = 66/91 (72.53%), Postives = 73/91 (80.22%), Query Frame = 1
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVR D TYPAGFM + S
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDITYPAGFMDVIS 91          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4_IXOSC (40S ribosomal protein S4 OS=Ixodes scapularis GN=RpS4 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.274e-31
Identity = 66/87 (75.86%), Postives = 72/87 (82.76%), Query Frame = 1
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFM 384
            MARG KKHLKRLNAPK WMLDKLGG FAP+PS+GPHK RE LPLI++LRNRLKYALT  EV  I+ QR + VD KVRTD  YPAGFM
Sbjct:    1 MARGPKKHLKRLNAPKSWMLDKLGGVFAPRPSTGPHKLRESLPLIIMLRNRLKYALTGAEVKKIVKQRLIKVDGKVRTDTNYPAGFM 87          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4_CARGR (40S ribosomal protein S4 OS=Carabus granulatus GN=RpS4 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.274e-31
Identity = 64/87 (73.56%), Postives = 72/87 (82.76%), Query Frame = 1
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFM 384
            MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RE LPL++ LRNRLKYALT  EV  I+MQR + VD KVRTD  YP+GFM
Sbjct:    1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRESLPLVIFLRNRLKYALTNSEVTKIVMQRLIKVDGKVRTDPNYPSGFM 87          
The following BLAST results are available for this feature:
BLAST of EY735706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RS4Y1_PANPA3.678e-3172.5340S ribosomal protein S4, Y isoform 1 OS=Pan panis... [more]
RS4Y1_HUMAN3.678e-3172.5340S ribosomal protein S4, Y isoform 1 OS=Homo sapi... [more]
RS4Y1_GORGO3.678e-3172.5340S ribosomal protein S4, Y isoform 1 OS=Gorilla g... [more]
RS4C_SCHPO3.678e-3171.4340S ribosomal protein S4-C OS=Schizosaccharomyces ... [more]
RS4B_SCHPO3.678e-3171.4340S ribosomal protein S4-B OS=Schizosaccharomyces ... [more]
RS4A_SCHPO3.678e-3171.4340S ribosomal protein S4-A OS=Schizosaccharomyces ... [more]
RS4Y2_PANTR4.804e-3172.5340S ribosomal protein S4, Y isoform 2 OS=Pan trogl... [more]
RS4Y1_PONPY4.804e-3172.5340S ribosomal protein S4, Y isoform 1 OS=Pongo pyg... [more]
RS4_IXOSC6.274e-3175.8640S ribosomal protein S4 OS=Ixodes scapularis GN=R... [more]
RS4_CARGR6.274e-3173.5640S ribosomal protein S4 OS=Carabus granulatus GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-003-H11-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735706 ID=EY735706; Name=EY735706; organism=Citrus sinensis; type=EST; length=880bp
CCACGCGTCCGCCCACGCGTCCGGAGCTAGCAGCGCTTGTGAGTGCATTT
TTCACTTCGTTTTTGTTTTGCAGGACTGTGACACGCCGTTGGCGAATCCA
AGCTCAGGCTCACGAACACAAAAATGGCGAGAGGTTTGAAGAAACATTTG
AAGAGGCTTAATGCCCCAAAGCACTGGATGCTTGACAAACTTGGTGGAGC
ATTTGCTCCCAAGCCTTCATCTGGGCCACACAAATCAAGGGAGTGTTTGC
CCTTAATTCTTATCTTACGCAACCGCTTGAAGTATGCTCTTACATACCGA
GAAGTCATTGCAATTTTGATGCAACGACATGTGTTGGTTGATGCTAAGGT
TCGCACAGATAAGACTTACCCTGCTGGGTTCATGGGTATGCAGTCCTCAG
CCCATATACTATTATTGCCTTTTATAAATTATCCATGCCTTATTTGTGAG
GAAAATGGAATGTAATAGTAGAATCATTGCTTTTTTGTAGATGCGGGCTC
GAAATCATACTTGTGTTCATGATGATTCCTCCATTTCTGATATCATATTC
CGAATGTGAGCCTCCTTGATTTACTCTTTCTTTAAGAAGTGTTTTAAGAA
TTTTCACTTGTCCTTCTGACTATCAGATGTCGTGTCACTTCCACAGACGA
ATGAGAACTTCCGTCTCCTTTACAACACCACGGGCCGGTTCCCCCTTCAT
CCAATCAGGGATGAAGGAGGCTAGGGTGTGCGTTGAGGCCGCAGATGGCG
CCATCGTCTCTGCATCACCTGATGAGAAAGGATGGTCGGCCCCTTTACAT
TGTCGGGAGGCCGGAGGATGAGGGGGAGAGCGTGCTGGGGTAGGCAGGTT
GTGCCGGAGAACCCGCCCACTCCGCTGCGT
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