EY735706

Overview
NameEY735706
Unique NameEY735706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4_LYSTE (40S ribosomal protein S4 OS=Lysiphlebus testaceipes GN=RpS4 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.070e-30
Identity = 64/87 (73.56%), Postives = 70/87 (80.46%), Query Frame = 1
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFM 384
            MARG KKHLKRLNAPK WML KLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT  EV  I MQR + VD KVRTD  YP GFM
Sbjct:    1 MARGPKKHLKRLNAPKSWMLGKLGGVYAPRPSTGPHKLRECLPLLIFLRNRLKYALTNCEVTKITMQRLIKVDGKVRTDSNYPLGFM 87          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4_YARLI (40S ribosomal protein S4 OS=Yarrowia lipolytica GN=RPS4 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.384e-30
Identity = 65/87 (74.71%), Postives = 71/87 (81.61%), Query Frame = 1
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFM 384
            MARG KKHLKRL AP HWMLDKL G +AP+ S+GPHK RE LPL++ LRNRLKYAL  REV AILMQR V VD KVRTD T+PAGFM
Sbjct:    1 MARGPKKHLKRLAAPSHWMLDKLSGTYAPRSSAGPHKLRESLPLVIFLRNRLKYALNGREVNAILMQRLVKVDGKVRTDSTFPAGFM 87          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 3.114e-30
Identity = 65/87 (74.71%), Postives = 71/87 (81.61%), Query Frame = 1
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFM 384
            MARG KKHLKRL APK WMLDKLGG FAP+PS+GPHK RE LPL++ LRNRLKYAL   EV  I+MQR V VD KVRTD TYPAG+M
Sbjct:    1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYM 87          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4Y2_HUMAN (40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2 PE=1 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 9.060e-30
Identity = 64/91 (70.33%), Postives = 72/91 (79.12%), Query Frame = 1
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQ  + +D KVR D TYPAGF+ + S
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQHFLKIDGKVRVDITYPAGFIDVIS 91          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4_CANAL (40S ribosomal protein S4 OS=Candida albicans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.480e-28
Identity = 61/87 (70.11%), Postives = 67/87 (77.01%), Query Frame = 1
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFM 384
            M RG KKHLKRL AP HWML KL G +AP+PS+GPH  RE LPL + LRNRL YAL  REV AI+MQ+HV V  KVRTD TYPAGFM
Sbjct:    1 MGRGPKKHLKRLAAPSHWMLXKLSGTYAPRPSAGPHXLRESLPLXVFLRNRLXYALCGREVKAIMMQQHVQVVGKVRTDTTYPAGFM 87          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.037e-25
Identity = 59/85 (69.41%), Postives = 62/85 (72.94%), Query Frame = 1
Query:  130 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFM 384
            RG KKHLKRL AP HWMLDKLGG FA +P+ GPHK RE LPL L LRNRLKYAL Y E   IL QR V VD KVRT   +P GFM
Sbjct:    2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFM 86          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.401e-22
Identity = 54/88 (61.36%), Postives = 64/88 (72.73%), Query Frame = 1
Query:  127 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQR--HVLVDAKVRTDKTYPAGFM 384
            ARG KKHLKR+NAPK WML+KLGG +A +PS GPHK RE LPL ++L+ RL YAL  R+V  IL  +  +V VD KVR DK YP G M
Sbjct:    1 ARGPKKHLKRINAPKSWMLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEGNVFVDQKVRRDKGYPTGLM 88          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4_HORSE (40S ribosomal protein S4 (Fragment) OS=Equus caballus GN=RPS4 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.549e-21
Identity = 51/72 (70.83%), Postives = 57/72 (79.17%), Query Frame = 1
Query:  181 LDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            LDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFM + S
Sbjct:    1 LDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVIS 72          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4_ENCCU (40S ribosomal protein S4 OS=Encephalitozoon cuniculi GN=RPS4 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.772e-17
Identity = 41/91 (45.05%), Postives = 59/91 (64.84%), Query Frame = 1
Query:  124 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            M  G + HLKR  APK WMLDK GG FA  P+SGPHK  EC+PL  ++   L+YA  ++E+  IL ++++ V+ +VRT+  +P G   + S
Sbjct:    1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVNGRVRTNSHFPVGLFDVVS 91          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4E_PYRKO (30S ribosomal protein S4e OS=Pyrococcus kodakaraensis GN=rps4e PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.336e-14
Identity = 41/101 (40.59%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  130 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGM----QSSAHILLLP 420
            +G K+HLKRL AP  W + +    +A +PS GPH  +  +PLI I+R+ L YA T RE   IL +  +LVD +VR D  +P G M +    ++  H  +LP
Sbjct:    4 KGPKRHLKRLAAPTSWYIHRKAYKWAVRPSPGPHSMKTSIPLIYIVRDYLGYAKTAREARKILNEGKILVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLP 104          
The following BLAST results are available for this feature:
BLAST of EY735706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RS4_LYSTE1.070e-3073.5640S ribosomal protein S4 OS=Lysiphlebus testaceipe... [more]
RS4_YARLI2.384e-3074.7140S ribosomal protein S4 OS=Yarrowia lipolytica GN... [more]
RS4_DROME3.114e-3074.7140S ribosomal protein S4 OS=Drosophila melanogaste... [more]
RS4Y2_HUMAN9.060e-3070.3340S ribosomal protein S4, Y isoform 2 OS=Homo sapi... [more]
RS4_CANAL8.480e-2870.1140S ribosomal protein S4 OS=Candida albicans GN=RP... [more]
RS4_CAEEL1.037e-2569.4140S ribosomal protein S4 OS=Caenorhabditis elegans... [more]
RS4_TETTH1.401e-2261.3640S ribosomal protein S4 OS=Tetrahymena thermophil... [more]
RS4_HORSE1.549e-2170.8340S ribosomal protein S4 (Fragment) OS=Equus cabal... [more]
RS4_ENCCU1.772e-1745.0540S ribosomal protein S4 OS=Encephalitozoon cunicu... [more]
RS4E_PYRKO5.336e-1440.5930S ribosomal protein S4e OS=Pyrococcus kodakaraen... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-003-H11-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735706 ID=EY735706; Name=EY735706; organism=Citrus sinensis; type=EST; length=880bp
CCACGCGTCCGCCCACGCGTCCGGAGCTAGCAGCGCTTGTGAGTGCATTT
TTCACTTCGTTTTTGTTTTGCAGGACTGTGACACGCCGTTGGCGAATCCA
AGCTCAGGCTCACGAACACAAAAATGGCGAGAGGTTTGAAGAAACATTTG
AAGAGGCTTAATGCCCCAAAGCACTGGATGCTTGACAAACTTGGTGGAGC
ATTTGCTCCCAAGCCTTCATCTGGGCCACACAAATCAAGGGAGTGTTTGC
CCTTAATTCTTATCTTACGCAACCGCTTGAAGTATGCTCTTACATACCGA
GAAGTCATTGCAATTTTGATGCAACGACATGTGTTGGTTGATGCTAAGGT
TCGCACAGATAAGACTTACCCTGCTGGGTTCATGGGTATGCAGTCCTCAG
CCCATATACTATTATTGCCTTTTATAAATTATCCATGCCTTATTTGTGAG
GAAAATGGAATGTAATAGTAGAATCATTGCTTTTTTGTAGATGCGGGCTC
GAAATCATACTTGTGTTCATGATGATTCCTCCATTTCTGATATCATATTC
CGAATGTGAGCCTCCTTGATTTACTCTTTCTTTAAGAAGTGTTTTAAGAA
TTTTCACTTGTCCTTCTGACTATCAGATGTCGTGTCACTTCCACAGACGA
ATGAGAACTTCCGTCTCCTTTACAACACCACGGGCCGGTTCCCCCTTCAT
CCAATCAGGGATGAAGGAGGCTAGGGTGTGCGTTGAGGCCGCAGATGGCG
CCATCGTCTCTGCATCACCTGATGAGAAAGGATGGTCGGCCCCTTTACAT
TGTCGGGAGGCCGGAGGATGAGGGGGAGAGCGTGCTGGGGTAGGCAGGTT
GTGCCGGAGAACCCGCCCACTCCGCTGCGT
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