EY735706

Overview
NameEY735706
Unique NameEY735706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4E_METVS (30S ribosomal protein S4e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4e PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.717e-12
Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = 1
Query:  130 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQSSAHILLLPFINYPCLIC-EENG 459
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+LI+R+ LK A   RE   I+    +L+D   R +  +P G M       +L +P +N   L+  +ENG
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLM------DVLSIPELNENYLVLFDENG 108          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4E_METVA (30S ribosomal protein S4e OS=Methanococcus vannielii GN=rps4e PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.717e-12
Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = 1
Query:  130 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQSSAHILLLPFINYPCLIC-EENG 459
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+LI+R+ LK A   RE   I+    +L+D   R +  +P G M       +L +P +N   L+  +ENG
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLM------DVLSIPELNENYLVLFDENG 108          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4E_METJA (30S ribosomal protein S4e OS=Methanocaldococcus jannaschii GN=rps4e PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.523e-12
Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = 1
Query:  130 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            +G K+HLKRL AP  W L +    F  +P  G H   E LPL+LI+R+ LKYA   RE   I+    VLVD +VR ++  P G M + S
Sbjct:    4 KGPKRHLKRLAAPVRWELPRKIHKFTVRPLPGAHPMSESLPLLLIVRDILKYADNAREAKKIIKMGKVLVDGRVRKEEKLPVGLMDVVS 92          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4E_IGNH4 (30S ribosomal protein S4e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4e PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.523e-12
Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 1
Query:  124 MAR--GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFM 384
            MAR  G K+HLKRL AP  W + +    +A KP  GPH   E +PL++++R+ L YA T RE   ++ +  + VD +VR D  +P G M
Sbjct:    1 MARVGGGKRHLKRLAAPAFWPIHRKEAVWAVKPRPGPHPIEESIPLLILVRDVLGYAETSREARKLIAEGRIKVDGRVRKDYKFPVGAM 89          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4E_CALMQ (30S ribosomal protein S4e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4e PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.113e-11
Identity = 33/80 (41.25%), Postives = 49/80 (61.25%), Query Frame = 1
Query:  145 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFM 384
            HL+R  +P+ W +++ G  ++ KPS GPH +   +PL ++LR+   YA T RE   I+ + +V VD KVR D  YP G M
Sbjct:    3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGYVKVDGKVRRDYKYPVGLM 82          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.113e-11
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 1
Query:  124 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFM 384
            MAR G ++ LK L AP+ W + +    +A KP  GPH + + LPL+LI+RN L YA T RE   ++ + H  VD  VR D  +P GFM
Sbjct:    1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFRVDGVVRKDYKFPVGFM 88          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4E_METST (30S ribosomal protein S4e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4e PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.453e-11
Identity = 37/88 (42.05%), Postives = 49/88 (55.68%), Query Frame = 1
Query:  133 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            G +KHLKR  APK W + K    +  K S+GPH   E +PL+++LR+ L  A   RE   IL    VLVD   R +  +P GFM + S
Sbjct:    5 GSRKHLKRFKAPKMWPIHKKEEVWTTKTSAGPHALEESIPLVMVLRDILGLAANSREAKIILNNSDVLVDGIPRKNHRFPVGFMDVIS 92          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4E_METKA (30S ribosomal protein S4e OS=Methanopyrus kandleri GN=rps4e PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.212e-11
Identity = 35/85 (41.18%), Postives = 50/85 (58.82%), Query Frame = 1
Query:  133 GLKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFM 384
            G K+H+KRL AP  W +  K GG FAP+P  GPH     +PL++++R+ L YA   RE   I+ +  + VD  VR +  +P G M
Sbjct:    7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPKFPVGIM 91          
BLAST of EY735706 vs. ExPASy Swiss-Prot
Match: RS4E_METTH (30S ribosomal protein S4e OS=Methanobacterium thermoautotrophicum GN=rps4e PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11
Identity = 35/86 (40.70%), Postives = 48/86 (55.81%), Query Frame = 1
Query:  139 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 396
            +KHLKR  +P HW +      +  KPS GPH     LPL++I+R+ LK A   RE   I+    VLVD + R +  +P GFM + S
Sbjct:    7 RKHLKRFKSPVHWPIHPKEYKWTVKPSPGPHAIENSLPLMIIVRDILKVADNAREARKIINSGEVLVDGRPRKNYKFPVGFMDVVS 92          
The following BLAST results are available for this feature:
BLAST of EY735706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RS4E_METVS1.717e-1237.8430S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_METVA1.717e-1237.8430S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_METJA6.523e-1243.8230S ribosomal protein S4e OS=Methanocaldococcus ja... [more]
RS4E_IGNH46.523e-1241.5730S ribosomal protein S4e OS=Ignicoccus hospitalis... [more]
RS4E_CALMQ1.113e-1141.2530S ribosomal protein S4e OS=Caldivirga maquilinge... [more]
RS4E_AERPE1.113e-1144.3230S ribosomal protein S4e OS=Aeropyrum pernix GN=r... [more]
RS4E_METST1.453e-1142.0530S ribosomal protein S4e OS=Methanosphaera stadtm... [more]
RS4E_METKA7.212e-1141.1830S ribosomal protein S4e OS=Methanopyrus kandleri... [more]
RS4E_METTH9.419e-1140.7030S ribosomal protein S4e OS=Methanobacterium ther... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-003-H11-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735706 ID=EY735706; Name=EY735706; organism=Citrus sinensis; type=EST; length=880bp
CCACGCGTCCGCCCACGCGTCCGGAGCTAGCAGCGCTTGTGAGTGCATTT
TTCACTTCGTTTTTGTTTTGCAGGACTGTGACACGCCGTTGGCGAATCCA
AGCTCAGGCTCACGAACACAAAAATGGCGAGAGGTTTGAAGAAACATTTG
AAGAGGCTTAATGCCCCAAAGCACTGGATGCTTGACAAACTTGGTGGAGC
ATTTGCTCCCAAGCCTTCATCTGGGCCACACAAATCAAGGGAGTGTTTGC
CCTTAATTCTTATCTTACGCAACCGCTTGAAGTATGCTCTTACATACCGA
GAAGTCATTGCAATTTTGATGCAACGACATGTGTTGGTTGATGCTAAGGT
TCGCACAGATAAGACTTACCCTGCTGGGTTCATGGGTATGCAGTCCTCAG
CCCATATACTATTATTGCCTTTTATAAATTATCCATGCCTTATTTGTGAG
GAAAATGGAATGTAATAGTAGAATCATTGCTTTTTTGTAGATGCGGGCTC
GAAATCATACTTGTGTTCATGATGATTCCTCCATTTCTGATATCATATTC
CGAATGTGAGCCTCCTTGATTTACTCTTTCTTTAAGAAGTGTTTTAAGAA
TTTTCACTTGTCCTTCTGACTATCAGATGTCGTGTCACTTCCACAGACGA
ATGAGAACTTCCGTCTCCTTTACAACACCACGGGCCGGTTCCCCCTTCAT
CCAATCAGGGATGAAGGAGGCTAGGGTGTGCGTTGAGGCCGCAGATGGCG
CCATCGTCTCTGCATCACCTGATGAGAAAGGATGGTCGGCCCCTTTACAT
TGTCGGGAGGCCGGAGGATGAGGGGGAGAGCGTGCTGGGGTAGGCAGGTT
GTGCCGGAGAACCCGCCCACTCCGCTGCGT
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