EY735670

Overview
NameEY735670
Unique NameEY735670
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735670 vs. ExPASy Swiss-Prot
Match: RAE1_MOUSE (Rab proteins geranylgeranyltransferase component A 1 OS=Mus musculus GN=Chm PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.863e-24
Identity = 67/231 (29.00%), Postives = 120/231 (51.95%), Query Frame = 3
Query:   81 RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTKELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYML-NKPECKVXFDEKGKXXGVTSK-GETAKCKKVVGDPSYLAKQVRKGXE 767
            R +N+D++ K + + G L+ +LI ++V++Y  FK +     + +G V +VP +  +   S  + + EKR   KF  +  +Y E+ P  ++  + T  T  E +    L  N   F+ H++A+  +        +D +K  K + + + R+ G +P+++PLYG GELPQ F R+ AV+GG Y L +  +C V   E  K   +  + G+    K  V + SYL++    G +
Sbjct:  237 RRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEY-EDHPDEYKAYEET--TFSEYLKTQKLTPNLQYFVLHSIAMTSE---TTSSTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIVDQFGQRIISKHFVIEDSYLSENTCSGVQ 460          
BLAST of EY735670 vs. ExPASy Swiss-Prot
Match: RAE1_RAT (Rab proteins geranylgeranyltransferase component A 1 OS=Rattus norvegicus GN=Chm PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.799e-23
Identity = 65/226 (28.76%), Postives = 119/226 (52.65%), Query Frame = 3
Query:   81 RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDE--NDPKTHEGMDLTRVTTKELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYML-NKPECKVXFDEKGKXXGVTSK-GETAKCKKVVGDPSYLAK 746
            R +N+D++ + + + G L+ +LI ++V++Y  FK +     + +G V +VP +  +   S  + + EKR   KF  +  +Y+E  ++ + +EG      T  E +    L  N   F+ H++A+  +        +D +K  K + + + R+ G +P+++PLYG GELPQ F R+ AV+GG Y L +  +C V   E  K   V  + G+    K  + + SYL++
Sbjct:  222 RRFNIDLVSQLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEG-----TTFSEYLKTQKLTPNLQYFVLHSIAMTSE---TTSCTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE 438          
BLAST of EY735670 vs. ExPASy Swiss-Prot
Match: RAE1_HUMAN (Rab proteins geranylgeranyltransferase component A 1 OS=Homo sapiens GN=CHM PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 8.295e-22
Identity = 59/202 (29.21%), Postives = 106/202 (52.48%), Query Frame = 3
Query:   81 RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTKELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYML-NKPECKVXFDEKGKXXGV 683
            R +N+D++ K + + G L+ +LI ++V++Y  FK +     + +G+V +VP +  +   S  + + EKR   KF  +  +Y E  P  ++G +   +T  E +    L  N    + H++A+  +        +D +K  K +   + R+ G +P+++PLYG GELPQ F R+ AV+GG Y L +  +C V   E  K   +
Sbjct:  225 RRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEY-EKYPDEYKGYE--EITFYEYLKTQKLTPNLQYIVMHSIAMTSETA---SSTIDGLKATKNFLHCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAI 419          
BLAST of EY735670 vs. ExPASy Swiss-Prot
Match: RAEP_YEAST (Rab proteins geranylgeranyltransferase component A OS=Saccharomyces cerevisiae GN=MRS6 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.604e-11
Identity = 60/226 (26.55%), Postives = 100/226 (44.25%), Query Frame = 3
Query:   75 SSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTKELIA-KYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLY-GLGELPQAFARLSAVYGGTYMLNKPECKVXFDEKGKXXGVTSKGETAKCKKVVGDPSYLAK 746
            SSRD+ +D+ PK + A   L+ +LI + V +YL F+++     Y      K+  T  E      + +  KR   KF  +V ++   + +T         T  + +  K+ L+   +  +  ++ L  D   LN    + ++R++ Y  S   + G  P +   Y G GEL Q F R +AV G TY LN  E  V F+   K        +    +KV+  P+   K
Sbjct:  125 SSRDFGIDLSPKILFAKSDLLSILIKSRVHQYLEFQSLSNFHTYENDCFEKLTNTKQEIFTDQNLPLMTKRNLMKFIKFVLNW---EAQTEIWQPYAERTMSDFLGEKFKLEKPQVFELIFSIGLCYD---LNVKVPEALQRIRRYLTSFDVY-GPFPALCSKYGGPGELSQGFCRSAAVGGATYKLN--EKLVSFNPTTKVATFQDGSKVEVSEKVIISPTQAPK 341          
The following BLAST results are available for this feature:
BLAST of EY735670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RAE1_MOUSE8.863e-2429.00Rab proteins geranylgeranyltransferase component A... [more]
RAE1_RAT9.799e-2328.76Rab proteins geranylgeranyltransferase component A... [more]
RAE1_HUMAN8.295e-2229.21Rab proteins geranylgeranyltransferase component A... [more]
RAEP_YEAST8.604e-1126.55Rab proteins geranylgeranyltransferase component A... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-003-E04-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735670 ID=EY735670; Name=EY735670; organism=Citrus sinensis; type=EST; length=830bp
CCACGCGTCCGCTCAATCTCATTCAGCTCTGGAAGAGATTTAGGGGAAAT
GAACAACCTCCTGCTCACTTGGGCTCTAGTAGGGATTATAATGTTGACAT
GATCCCGAAGTTTATAATTGCAAATGGAGCTCTTGTTCGTGTCCTCATTC
ATACTGATGTTACAAAGTATCTGTACTTCAAAGCTGTGGATGGCAGCTTC
GTCTATAATAAAGGAAAGGTCCACAAGGTGCCAGCAACTGATATGGAAGC
GCTCAAATCTCCACTCATGGGTATTTTTGAGAAGCGCCGTGCACGCAAGT
TTTTCATTTATGTTCAAGATTATGATGAAAATGATCCCAAAACACACGAG
GGAATGGACTTGACCAGGGTGACCACTAAAGAGCTGATTGCGAAGTATGG
TCTTGATGACAACACTATTGACTTCATTGGTCATGCATTGGCACTTCATA
GAGATGATCGTTACTTAAACGAACCTGCTCTTGATACAGTGAAGAGAATG
AAGTTATACGCAGAGTCTATTGCACGATTTCAAGGAGGATCACCATACAT
TTACCCTCTGTATGGCCTTGGAGAGCTGCCTCAGGCCTTTGCTCGGCTTA
GTGCTGTTTATGGTGGGACGTATATGTTGAATAAACCTGAGTGCAAGGTA
NAGTTTGATGAAAAAGGTAAANTANTCGGTGTCACGTCAAAAGGGGAAAC
TGCAAAGTGCAAGAAAGTTGTTGGTGATCCTTCCTATTTGGCCAAACAGG
TGAGGAAGGGTTGNGAGGGTTGGTAGGGCAACGCTATTAAGAGCGAACCG
ATGCCAAACACAAATGAGTCCGATTTGGTG
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