EY735605

Overview
NameEY735605
Unique NameEY735605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735605 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.814e-60
Identity = 104/147 (70.75%), Postives = 125/147 (85.03%), Query Frame = 1
Query:   13 SAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 453
            +AFPATKK N D +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E  KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:   32 AAFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 177          
BLAST of EY735605 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 8.212e-60
Identity = 102/150 (68.00%), Postives = 125/150 (83.33%), Query Frame = 1
Query:    4 RVRSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 453
            +  +AFP TKK N   +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+VYRE+ SSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E  KEYP +++RIIGFDN RQVQC+SF+A+KP G
Sbjct:   24 KANAAFPVTKKVNG-FSTLPSNGGRVQCMKVWPPVGKKKYETLSYLPELTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCVSFIASKPTG 172          
BLAST of EY735605 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.072e-59
Identity = 103/147 (70.07%), Postives = 125/147 (85.03%), Query Frame = 1
Query:   13 SAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 453
            +AFP TKK N D +++ASNGGRVQCMKVWPP G K++ETLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E  KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:   27 AAFPVTKKVN-DFSTLASNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of EY735605 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.072e-59
Identity = 103/150 (68.67%), Postives = 125/150 (83.33%), Query Frame = 1
Query:    4 RVRSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 453
            +  +AFP TKK N D +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E  KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:   24 KANAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPDLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPGG 172          
BLAST of EY735605 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.401e-59
Identity = 103/146 (70.55%), Postives = 124/146 (84.93%), Query Frame = 1
Query:   16 AFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 453
            AFPATKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E  KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:   33 AFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPEG 177          
BLAST of EY735605 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.829e-59
Identity = 105/145 (72.41%), Postives = 122/145 (84.14%), Query Frame = 1
Query:   13 SAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKP 447
            SAFP ++K+N DITS+A+NGGRV CM+VWPP  LKKFETLSYLP LS+E+LLKEI+YLL  GW+PCLEFE+    VYRE++ SPGYYDGRYWTMWKLPM+GCTDA+QV  EV E    YP + VRIIGFDNKRQVQCISF+A KP
Sbjct:   32 SAFPVSRKSNVDITSLATNGGRVNCMQVWPPRNLKKFETLSYLPTLSEESLLKEINYLLIKGWVPCLEFEVGPAHVYRENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAEVVECKNAYPDAHVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY735605 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.389e-59
Identity = 102/147 (69.39%), Postives = 124/147 (84.35%), Query Frame = 1
Query:   13 SAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 453
            +AFP TKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E  KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:   27 AAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTESQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of EY735605 vs. ExPASy Swiss-Prot
Match: RBS5_FLAPR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 4.075e-59
Identity = 102/147 (69.39%), Postives = 124/147 (84.35%), Query Frame = 1
Query:   13 SAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 453
            +AFP TKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E  KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:   27 AAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of EY735605 vs. ExPASy Swiss-Prot
Match: RBS6_FLAPR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.549e-58
Identity = 101/148 (68.24%), Postives = 123/148 (83.11%), Query Frame = 1
Query:    4 RVRSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKP 447
            +  +AFP TKK N D +++ SNGGRVQCMKVWPP G KK+ TLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E  KEYP +++RIIGFDN RQVQCISF+A+KP
Sbjct:   24 KANAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKKYXTLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSVQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170          
BLAST of EY735605 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.506e-58
Identity = 100/147 (68.03%), Postives = 125/147 (85.03%), Query Frame = 1
Query:   13 SAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVXKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 453
            +  P ++++N    S+ SNGGR++CM+VWP  G+KKFETLSYLPPLS EALLK++ YL+RS W+PCLEF  + G+++REH++SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV KEYP ++VRIIGFDN RQVQC+SF+A KPPG
Sbjct:   23 AGLPVSRRSNASSASV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 167          
The following BLAST results are available for this feature:
BLAST of EY735605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
RBS4_FLAPR4.814e-6070.75Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS_FLATR8.212e-6068.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS7_FLAPR1.072e-5970.07Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS1_FLAPR1.072e-5968.67Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS2_FLAPR1.401e-5970.55Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_SILPR1.829e-5972.41Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_FLAPR2.389e-5969.39Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS5_FLAPR4.075e-5969.39Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS6_FLAPR1.549e-5868.24Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS_HORVU4.506e-5868.03Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-001-F12-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735605 ID=EY735605; Name=EY735605; organism=Citrus sinensis; type=EST; length=868bp
CCACGCGTCCGTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGACAT
TACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGC
CACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTG
TCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCTG
GATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGC
ACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAAG
CTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGG
GGAGGTCCANAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTTG
ACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCACCA
GGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAATATTGTT
GATTATTATTATGTGTAACCCCCATAATGATCATTCGATCAATGGGGGTT
CGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCTCAAACTT
TTTTGGTTTGCTCCCCGACTTTGGCTTTTTTTTTTTATATATATTTTAAT
AGTTGAACAAGAGCCATGCCGCGCGGGCCAGGCGGGCCGAGGAGGGGGCA
CCGTAGCGGAGCTCGACCACGAAAAAAAACTGGGGGGGGCCTTCCAAGAA
GAAACACACGTGCTTGGGCGGCGGGTGAAGGGCGGTAGGCTTTCAATAGT
GGCGCCCCGAAAGGAGGTCCCGGCGGCTCGTTATCCACGCTGGGGCAGGG
AGAAACCTGGGCCTCCGC
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