EY735597

Overview
NameEY735597
Unique NameEY735597
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735597 vs. ExPASy Swiss-Prot
Match: PSMR_METVS (Proteasome-activating nucleotidase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.306e-14
Identity = 39/88 (44.32%), Postives = 60/88 (68.18%), Query Frame = 3
Query:   30 IPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVANVMKKETEKNMSLRKL 293
            I  P+E+ RL+I KIH+ +MN+ + +DL++IA+      GA++KAVCTEAGMFA+RE R +VT +DF+ A+  V  K+ +    +  L
Sbjct:  316 IAAPDEDGRLEIFKIHTDKMNI-KSVDLREIAKMAENMVGADIKAVCTEAGMFAIREGREYVTTKDFKEALLKVTGKKEKSEEGIAHL 402          
BLAST of EY735597 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.636e-13
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 3
Query:   30 IPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVANVMKKETEKNMSL 284
            +P P  E+R  ILKIH+R+MNL   +DL+KIA   + +SGA+L A+  EAGMFA+R  R  V   DF  AVA VM    E+N S+
Sbjct:  327 VPMPTAEAREQILKIHARKMNLADDVDLRKIALITDESSGADLSAIVMEAGMFAIRNNRDVVDSSDFNAAVAKVM---GERNRSM 408          
BLAST of EY735597 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.645e-13
Identity = 36/71 (50.70%), Postives = 47/71 (66.20%), Query Frame = 3
Query:   30 IPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV 242
            IP P+ E R  ILK+H+R MNL   +DL ++A    G +GAEL A+C EAGMFA+R+    V QEDF  A+
Sbjct:  321 IPLPDTEGRYSILKVHTRCMNLSEDVDLMEVARLTEGRNGAELNAICMEAGMFAIRKEHPQVDQEDFLTAL 391          
BLAST of EY735597 vs. ExPASy Swiss-Prot
Match: PSMR_METB6 (Proteasome-activating nucleotidase OS=Methanoregula boonei (strain 6A8) GN=pan PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.218e-13
Identity = 34/74 (45.95%), Postives = 51/74 (68.92%), Query Frame = 3
Query:   30 IPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVANV 251
            IP P+EE RL ILK+H+R + +   ++L +IA    G +GA+L+A+C EAGM+A+R  R  +T+EDF  A+  V
Sbjct:  346 IPLPDEEGRLSILKVHTRTLTMEETVNLPEIAGLTEGKNGADLRAICMEAGMYAIRNERPAITREDFLSAIEKV 419          
BLAST of EY735597 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 6.218e-13
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 3
Query:   30 IPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVANV-MKKETEKNM 278
            +P P  E+R  ILKIH  +M L   ID KK+A+   G SGA+LKA+ TEAGMFA+R+ +  V  EDF  AV  V M  +T+K M
Sbjct:  327 VPMPGIEARGKILKIHCGKMTLAGDIDFKKLAKVTEGMSGADLKAIATEAGMFAVRKDKALVEMEDFLEAVEKVSMAADTQKMM 410          
BLAST of EY735597 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 6.218e-13
Identity = 35/77 (45.45%), Postives = 51/77 (66.23%), Query Frame = 3
Query:   33 PNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVANVMKKE 263
            P+P+EE+R  IL+IHSR+MN+   ++ +++A   +  +GA+LKAVC EAGM ALR     VT EDF   +  V  K+
Sbjct:  345 PHPSEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKK 421          
BLAST of EY735597 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.218e-13
Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 3
Query:   33 PNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVANVMKKETE 269
            P P+E+++  I +IH+ RM L   + L ++    +  SGA++KA+CTEAG+ ALRERR+ VT EDF+ +  N + K+TE
Sbjct:  354 PLPDEKTKKRIFQIHTSRMTLADDVTLDELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENFLYKKTE 432          
BLAST of EY735597 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 3
Query:   33 PNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVANVMKKE 263
            P+P EE+R  IL+IHSR+MN+   ++ +++A   +  +GA+LKAVC EAGM ALR     VT EDF   +  V  K+
Sbjct:  339 PHPTEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKK 415          
BLAST of EY735597 vs. ExPASy Swiss-Prot
Match: PRS4_CAEEL (Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 34/79 (43.04%), Postives = 56/79 (70.89%), Query Frame = 3
Query:   33 PNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVANVMKKETE 269
            P P+E+++  I +IH+ RM L + ++L++     +  SGA++KA+CTEAG+ ALRERR+ VT EDF+ +  NV+ ++ E
Sbjct:  357 PLPDEKTKRRIFQIHTSRMTLGKEVNLEEFITAKDELSGADIKAMCTEAGLLALRERRMRVTMEDFQKSKENVLYRKKE 435          
BLAST of EY735597 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.061e-12
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 3
Query:   30 IPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVANV-MKKETEKNM 278
            +P P  E+R  ILKIH  +M L   ID KK+A+   G SGA+LKA+ TEAGMFA+R  +  V  E+F  AV  V M  +T+K M
Sbjct:  327 VPMPGIEARGKILKIHCEKMTLAEDIDFKKLAKATEGMSGADLKAIATEAGMFAVRRDKELVEMEEFLEAVEKVSMAADTQKMM 410          
The following BLAST results are available for this feature:
BLAST of EY735597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
PSMR_METVS4.306e-1444.32Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_UNCMA1.636e-1349.41Proteasome-activating nucleotidase OS=Uncultured m... [more]
PSMR_METHJ3.645e-1350.70Proteasome-activating nucleotidase OS=Methanospiri... [more]
PSMR_METB66.218e-1345.95Proteasome-activating nucleotidase OS=Methanoregul... [more]
PSMR_METAC6.218e-1350.00Proteasome-activating nucleotidase OS=Methanosarci... [more]
PRS6A_ORYSJ6.218e-1345.4526S protease regulatory subunit 6A homolog OS=Oryz... [more]
PRS4_CHICK6.218e-1344.3026S protease regulatory subunit 4 OS=Gallus gallus... [more]
PRS6A_SOLLC8.121e-1345.4526S protease regulatory subunit 6A homolog OS=Sola... [more]
PRS4_CAEEL8.121e-1343.04Probable 26S protease regulatory subunit 4 OS=Caen... [more]
PSMR_METMA1.061e-1248.81Proteasome-activating nucleotidase OS=Methanosarci... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-001-F03-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735597 ID=EY735597; Name=EY735597; organism=Citrus sinensis; type=EST; length=581bp
CACGCGTCCGCGAATTGACAGAAAGATTGATTCCAAATCCTAATGAAGAG
TCTCGTCTTGATATCCTAAAAATTCATTCAAGAAGAATGAATTTAATGCG
TGGCATTGATTTGAAGAAGATTGCCGAGAAGATGAATGGTGCATCTGGTG
CGGAGCTTAAGGCTGTGTGCACAGAAGCCGGTATGTTTGCTCTAAGAGAG
AGAAGGATCCATGTAACACAGGAAGATTTTGAGATGGCAGTGGCCAATGT
CATGAAGAAAGAAACAGAGAAGAACATGTCCTTGCGGAAGTTGTGGAAGN
TATCATTTCCATGTGCTGTGCTGTGTATTTGCTTANTTTCTGAGCAAGAT
TCANGTAGTCCCTTACGGCACTCACTCGTGTTCTGGGACATTTGCACGAT
AGGCCCTTTTAGCCTGACTGTTGTCTTTTCTTGCGCTCTAGCCTCCTAAT
GATAAACAAATTTGGCATCTATTTTATCTAAATTTAAATTCGCATGCAAT
TCTGGGAAACCTCAGTACCTCACTAAAATATGGAAAAGCCCGTCTGTGTC
TTGNTAGCAGCGGTACTATCATCGGTTTCCT
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