EY735544

Overview
NameEY735544
Unique NameEY735544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS1_BRANA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.936e-54
Identity = 106/161 (65.84%), Postives = 124/161 (77.02%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            MASSM+SS  V T    S AQA+MVAPFTGLKSSSA P T+K NNDITSI SNGGRV CMKVWPP G KKFETLSYLP L++  L KE+ YLLR+ WIPC+EFELE G+V REH  +PGYYDGRY TM KLP++GCTD+  VLK+V +   E    F+R++
Sbjct:    1 MASSMLSSAAVVT----SPAQATMVAPFTGLKSSSAFPVTRKANNDITSIVSNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRII 157          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS_RAPSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.528e-54
Identity = 106/161 (65.84%), Postives = 123/161 (76.40%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            MASSM+SS  V T    S  QA+MVAPFTGLKSS+A P T+KTN DITSIASNGGRV CMKVWPP G KKFETLSYLP LSD  L KE+ YLLR+ WIPC+EFELE G+V REH  +PGYYDGRY TM KLP++GCTD+  VLK+V +   E     +R++
Sbjct:    1 MASSMLSSAAVVT----SQLQATMVAPFTGLKSSAAFPVTRKTNTDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNALIRII 157          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS1_SOYBN (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Glycine max GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.528e-54
Identity = 108/161 (67.08%), Postives = 122/161 (75.78%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            MASSMISS  V T NRA    A MVAPFTGLKS +  P T+KTNNDITSIASNGGRV CM+VWPP G KKFETLSYLP L D  L KE+ YLLR GWIPCLEFELE G+V REH+ SP YYDGRY TM KLPM+GCTDA+ VLK++ +        F+R++
Sbjct:    1 MASSMISSPAVTTVNRAG---AGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQVWPPIGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPXYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRII 157          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.302e-54
Identity = 98/161 (60.87%), Postives = 128/161 (79.50%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            MASS++SS  VA+ N AS AQASMVAPFTGLKSS+  P T+K N DIT++ASN G+V CMKVWPP GL+KFETLSYLP +S+E L KE  YLLR+GW+PC+EF++  G+V RE+H SPG+YDGRY TM KLPM+GCTD++ V++++ +   E    F+R++
Sbjct:    1 MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNAGKVQCMKVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGFYDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVI 161          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS4_SOYBN (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Glycine max GN=RBCS-4 PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.302e-54
Identity = 108/161 (67.08%), Postives = 122/161 (75.78%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            MASSMISS  V T NRA    A MVAPFTGLKS +  P T+KTNNDITSIASNGGRV CM+VWPP G KKFETLSYLP L D  L KE+ YLLR GWIPCLEFELE G+V REH+ S GYYDGRY TM KLPM+GCTDA+ VLK++ +        F+R++
Sbjct:    1 MASSMISSPAVTTVNRAG---AGMVAPFTGLKSMAGLP-TRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSLGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRII 157          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.302e-54
Identity = 105/161 (65.22%), Postives = 127/161 (78.88%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            MASS++SS  VAT  R + AQASMVAPFTGLKS+++ P ++K N DITSIASNGGRV CM+VWPP  +KK+ETLSYLP LSDE LL EI YLL++GW+PCLEFE E G+V RE+H SPGYYDGRY TM KLPM+GCTDAT VL +V +        +VR++
Sbjct:    1 MASSVMSSAAVAT--RGNGAQASMVAPFTGLKSTASFPVSRKQNLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRII 159          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 3.302e-54
Identity = 107/182 (58.79%), Postives = 136/182 (74.73%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV*WEHEASECRASVGVAAEPAS 632
            MASSM+SS  VAT NR   AQASMVAPF GLKS +A P TKK NNDITS+A+NGGRV CM+VWPP G KKFETLSYLPPLS+E+L+KE+ YLL +GW+PCLEFE   G+V REH  +PGYYDGRY TM KLPM+GCTD + V+ ++ +        F+R++ +++   + +    +A +PAS
Sbjct:    1 MASSMVSSAAVATVNRTP-AQASMVAPFNGLKSVAAFPVTKK-NNDITSVATNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDN-VRQVQCISFIAYKPAS 179          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS1B_ARATH (Ribulose bisphosphate carboxylase small chain 1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.302e-54
Identity = 105/161 (65.22%), Postives = 124/161 (77.02%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            MASSM+SS  V T    S AQA+MVAPFTGLKSS++ P T+K NNDITSI SNGGRV CMKVWPP G KKFETLSYLP L+D  L KE+ YLLR+ WIPC+EFELE G+V REH  +PGYYDGRY TM KLP++GCTD+  VLK+V +   E    F+R++
Sbjct:    1 MASSMLSSAAVVT----SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRII 157          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBSB_SOLTU (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Solanum tuberosum GN=RBCS-2B PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 4.313e-54
Identity = 103/161 (63.98%), Postives = 128/161 (79.50%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            MASS++SS  VAT  RA+ AQASMV PFTGLKS+++ P ++K N DITSIASNGGRV CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YLL++GW+PCLEFE E G+V RE++ SPGYYDGRY TM KLPM+GCTDAT VL +V +        ++R++
Sbjct:    1 MASSIVSSAAVAT--RANGAQASMVGPFTGLKSTASFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRII 159          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBSC_SOLTU (Ribulose bisphosphate carboxylase small chain 2C, chloroplastic OS=Solanum tuberosum GN=RBCS-2C PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 7.356e-54
Identity = 103/161 (63.98%), Postives = 128/161 (79.50%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            MASS++SS  VAT  R + AQASMVAPFTGLKS+++ P ++K N DITSIASNGGRV CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YLL++GW+PCLEFE E G+V RE++ SPGYYDGRY TM KLPM+GCTDAT VL +V +        ++R++
Sbjct:    1 MASSVMSSAAVAT--RGNGAQASMVAPFTGLKSTASFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRII 159          
The following BLAST results are available for this feature:
BLAST of EY735544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
RBS1_BRANA1.936e-5465.84Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_RAPSA2.528e-5465.84Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SOYBN2.528e-5467.08Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_CUCSA3.302e-5460.87Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS4_SOYBN3.302e-5467.08Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS3A_SOLLC3.302e-5465.22Ribulose bisphosphate carboxylase small chain 3A/3... [more]
RBS1_MESCR3.302e-5458.79Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1B_ARATH3.302e-5465.22Ribulose bisphosphate carboxylase small chain 1B, ... [more]
RBSB_SOLTU4.313e-5463.98Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBSC_SOLTU7.356e-5463.98Ribulose bisphosphate carboxylase small chain 2C, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-001-A01-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735544 ID=EY735544; Name=EY735544; organism=Citrus sinensis; type=EST; length=919bp
GGAGAGGGGGCAACACCCCCCGAACCTGGTAACTCTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCCACGCCGTCCGGTACCAATGGCTTCCTCAAT
GATCTCATCGACCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGG
CCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTGCCCA
GCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGG
AAGAGTCCACTGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCG
AGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAA
ATCAGTTACCTTCTCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTT
GGAGAAAGGATGGGTGTGCCGTGAGCACCACATCTCACCAGGATACTACG
ATGGACGCTACTGCACAATGTGCAAACTGCCCATGTATGGGTGCACGGAT
GCAACGCATGTTTTGAAGGATGTTGGGGACGTCCCCAACGAATAGGAGCT
GACATTCGTGCGAATGGTCTGATGGGAGCACGAGGCGTCAGAGTGCAGGG
CGTCAGTTGGGGTTGCTGCCGAGCCCGCGAGTCGTCGTAGGTACCACGCG
CCGCCTCGGGTGGGACCCCTGCTCGATGGTTGTGGAATAATTATGGAGGT
GTAACCCCGGGGAGAGGGGGAGTGGAGGCGATGCGCGGTCACGTACCGGC
GTTTGGTTTCGCTAGGTACGCCACCTGGTACCCGCTGCCGCCACACCACA
CGAGAGTGGCCGGCGCCCGCCGTTAGGGGTGAGGCGGAGATTGCGATAGA
CAGACCATACAGAGGCGCGGTGGTGTGGGGGAGGAGGAGGTTTGGCGAGG
GCGCGCAGGGTGCCGGCGT
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