EY735544

Overview
NameEY735544
Unique NameEY735544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.062e-52
Identity = 100/158 (63.29%), Postives = 124/158 (78.48%), Query Frame = 3
Query:   96 SMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            ++ISS  V T NRA + QA++  PFTGLKSS+  P TKK NNDITSI SNG RV+CM+VWPP G KKFETLSYLPPL+DE LLKE+ YLLR GW+PC+EFELEKG+V R+++ SPGYYDGRY TM +LP++G TDA  VLK+V +   E    F+R++
Sbjct:    2 ALISSAAVTTINRAPV-QANLATPFTGLKSSAGFPVTKK-NNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLKEVAECKAEYPEAFIRII 157          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.062e-52
Identity = 102/182 (56.04%), Postives = 134/182 (73.63%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV*WEHEASECRASVGVAAEPAS 632
            MASS++S+     A   + AQA+MVAPF GLKS SA P T+K NNDITS+ASNGGRV CM+VWPP G+KKFETLSYLPPLS+E+LLKE+ YLL +GW+PCLEFE   G+V REH  +PGYYDGRY TM KLPM+GCTD + V+ ++ +        F+R++ +++   + +    +A +PAS
Sbjct:    1 MASSLMSNAATTMAAATTTAQANMVAPFNGLKSISAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDN-VRQVQCVSFIAYKPAS 180          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.387e-52
Identity = 100/161 (62.11%), Postives = 127/161 (78.88%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            MASS++SS  VAT  R+++AQA+MVAPFTGLKS+++ P ++K N DITSIASNGGRV CM+VWPP   KK+ETLSYLP LS E LL E+ YLL++GW+PCLEFE E G+V RE++ SPGYYDGRY TM KLPM+GCTDAT VL +V +        ++R++
Sbjct:    1 MASSVLSSAAVAT--RSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRII 159          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.387e-52
Identity = 100/161 (62.11%), Postives = 127/161 (78.88%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            MASS++SS  VAT  R+++AQA+MVAPFTGLKS+++ P ++K N DITSIASNGGRV CM+VWPP   KK+ETLSYLP LS E LL E+ YLL++GW+PCLEFE E G+V RE++ SPGYYDGRY TM KLPM+GCTDAT VL +V +        ++R++
Sbjct:    1 MASSVLSSAAVAT--RSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRII 159          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 5.272e-52
Identity = 101/182 (55.49%), Postives = 133/182 (73.08%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV*WEHEASECRASVGVAAEPAS 632
            MASS++S+     A   + AQA+MVAPF GLKS SA P T+K NNDITS+ASNGGRV CM+VWPP G KKFETLSYLPPLS+E+L+KE+ YLL +GW+PCLEFE   G+V REH  +PGYYDGRY TM KLPM+GCTD + V+ ++ +        F+R++ +++   + +    +A +PAS
Sbjct:    1 MASSLMSNAATTMAAATTTAQANMVAPFNGLKSVSAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDN-VRQVQCISFIAYKPAS 180          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 5.272e-52
Identity = 98/166 (59.04%), Postives = 122/166 (73.49%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV*WEHE 584
            MASSM+S+  +AT    + AQASMVAPF GLKS +  P TKK++ND +S+ SNGGRV CM+VWPP G KKFETLSYLPPLSD  LL ++ YLL  GWIPC+EFELE  +V RE+H SPGY DGRY TM KLPMYGCTD   VL +V +        F+R++ ++++
Sbjct:    1 MASSMLSNAAMATTAATAGAQASMVAPFNGLKSFATFPITKKSSNDFSSLPSNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNK 166          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.534e-51
Identity = 101/166 (60.84%), Postives = 128/166 (77.11%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV*WEHE 584
            MASSM++ST  A   RA  AQ+SMVAPF GL+SS A PAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+PC+EF  E G+V RE+H SPGYYDGRY TM KLPM+GCTDA+ V+ +V +        FVR++ ++++
Sbjct:    1 MASSMMAST--AAVARAGPAQSSMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNK 163          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.616e-51
Identity = 103/161 (63.98%), Postives = 123/161 (76.40%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            M SSM+ S+  AT  RAS AQ+SMVAPFTGLKS+SA P T+K N D++ + SNGGRV CMKVWP  G+KKFETLSYLP + DEAL+K+I YLLRS WIPCLEF   KG+V RE+H SPGYYDGRY TM KLPM+GCTDA  V K+V +   E    F+R++
Sbjct:    1 MVSSMMVSSA-ATFTRASPAQSSMVAPFTGLKSASAFPVTRKPNADLSHLPSNGGRVQCMKVWPIEGVKKFETLSYLPTMKDEALVKQIEYLLRSKWIPCLEF-CPKGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKEVEECKKEYPHAFIRII 159          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.616e-51
Identity = 98/161 (60.87%), Postives = 123/161 (76.40%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV 569
            MASS++SS  VAT +R   AQASMVAPFTGLKS+   PATKK N+DITS+ASNGGRV CMKVWP   +K++ETLSYLPPL+ + L +++ YLL + W+PCLEFE + G+V REHH SPGYYDGRY TM KLPM+GCTD   VL ++ +   E    F+R++
Sbjct:    1 MASSVLSSAAVATVSRTP-AQASMVAPFTGLKSTVGFPATKK-NDDITSLASNGGRVQCMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRII 159          
BLAST of EY735544 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 3.417e-51
Identity = 102/182 (56.04%), Postives = 133/182 (73.08%), Query Frame = 3
Query:   87 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSACPATKKTNNDITSIASNGGRVHCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVCREHHISPGYYDGRYCTMCKLPMYGCTDATHVLKDVGDVPNE*ELTFVRMV*WEHEASECRASVGVAAEPAS 632
            MASS++S+     A   + AQA+MVAPF GLKS SA P T+K NNDITS+ASNGGRV CM VWPP G+KKFETLSYLPPLS+E+LLKE+ YLL +GW+PCLEFE   G+V REH  +PGYYDGRY TM KLPM+GCTD + V+ ++ +        F+R++ +++   + +    +A +PAS
Sbjct:    1 MASSLMSNAATTMAAATTTAQANMVAPFNGLKSISAFPVTRK-NNDITSVASNGGRVQCM-VWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDN-VRQVQCVSFIAYKPAS 179          
The following BLAST results are available for this feature:
BLAST of EY735544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
RBS_TRIRP1.062e-5263.29Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS4_MESCR1.062e-5256.04Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS_TOBAC1.387e-5262.11Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_NICSY1.387e-5262.11Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_MESCR5.272e-5255.49Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS1_AMAHP5.272e-5259.04Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS5_LEMGI1.534e-5160.84Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS_MUSAC2.616e-5163.98Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_SPIOL2.616e-5160.87Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS5_MESCR3.417e-5156.04Ribulose bisphosphate carboxylase small chain 5, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-705-001-A01-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735544 ID=EY735544; Name=EY735544; organism=Citrus sinensis; type=EST; length=919bp
GGAGAGGGGGCAACACCCCCCGAACCTGGTAACTCTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCCACGCCGTCCGGTACCAATGGCTTCCTCAAT
GATCTCATCGACCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGG
CCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTGCCCA
GCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGG
AAGAGTCCACTGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCG
AGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAA
ATCAGTTACCTTCTCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTT
GGAGAAAGGATGGGTGTGCCGTGAGCACCACATCTCACCAGGATACTACG
ATGGACGCTACTGCACAATGTGCAAACTGCCCATGTATGGGTGCACGGAT
GCAACGCATGTTTTGAAGGATGTTGGGGACGTCCCCAACGAATAGGAGCT
GACATTCGTGCGAATGGTCTGATGGGAGCACGAGGCGTCAGAGTGCAGGG
CGTCAGTTGGGGTTGCTGCCGAGCCCGCGAGTCGTCGTAGGTACCACGCG
CCGCCTCGGGTGGGACCCCTGCTCGATGGTTGTGGAATAATTATGGAGGT
GTAACCCCGGGGAGAGGGGGAGTGGAGGCGATGCGCGGTCACGTACCGGC
GTTTGGTTTCGCTAGGTACGCCACCTGGTACCCGCTGCCGCCACACCACA
CGAGAGTGGCCGGCGCCCGCCGTTAGGGGTGAGGCGGAGATTGCGATAGA
CAGACCATACAGAGGCGCGGTGGTGTGGGGGAGGAGGAGGTTTGGCGAGG
GCGCGCAGGGTGCCGGCGT
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