EY735524

Overview
NameEY735524
Unique NameEY735524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length937
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: Y3613_METPP (Probable RNA methyltransferase Mpe_A3613 OS=Methylibium petroleiphilum (strain PM1) GN=Mpe_A3613 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 7.554e-38
Identity = 86/129 (66.67%), Postives = 97/129 (75.19%), Query Frame = 3
Query:   24 STKSAAPWAVVSRLTGKSGLIRQVASMEILAQVVLARRLRAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLLHQASINVP*SLV 410
            ST+       V  +TG+ GL+RQ+ S EI+AQV LAR  RAVKKVVFMGMGEPAHNLDNVLEAI LLGT G IGHKNLVFSTVGD RVF+ LP+ +VKPALALSLH T+ ELR  LL +A    P  LV
Sbjct:  100 STQVGCAVGCVFCMTGQGGLLRQLGSAEIVAQVALARGHRAVKKVVFMGMGEPAHNLDNVLEAIELLGTAGGIGHKNLVFSTVGDERVFERLPQGAVKPALALSLHTTKPELRAQLLPRAPRIAPEDLV 228          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: Y1157_DECAR (Probable RNA methyltransferase Daro_1157 OS=Dechloromonas aromatica (strain RCB) GN=Daro_1157 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.063e-37
Identity = 80/116 (68.97%), Postives = 93/116 (80.17%), Query Frame = 3
Query:   63 LTGKSGLIRQVASMEILAQVVLARRLRAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLLHQASINVP*SLV 410
            +TG+ GL+RQV+S E++AQVVL R  R V +VVFMGMGEP+HN+DNVLEAI+ LGT G IGHKNLVFSTVGD RVFD LP+Q V PALALSLH+TRAELR  LL +A    P  LV
Sbjct:  116 MTGRDGLLRQVSSAEMVAQVVLGRGRRKVTRVVFMGMGEPSHNMDNVLEAIDTLGTYGGIGHKNLVFSTVGDRRVFDRLPQQRVVPALALSLHSTRAELRAELLPKAPHIDPTELV 231          

HSP 2 Score: 26.9498 bits (58), Expect = 1.063e-37
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = 2
Query:   29 QVGCAVGCRFSFDGQE 76
            Q+GCAVGC F   G++
Sbjct:  105 QIGCAVGCTFCMTGRD 120          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: Y1951_THIDA (Probable RNA methyltransferase Tbd_1951 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=Tbd_1951 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.687e-35
Identity = 80/129 (62.02%), Postives = 95/129 (73.64%), Query Frame = 3
Query:   24 STKSAAPWAVVSRLTGKSGLIRQVASMEILAQVVLARRLRAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLLHQASINVP*SLV 410
            ST+       V  +TG++GL+RQ++  EI+AQVVLAR  R V+KVVFMGMGEPAHNLDNVL+AI LLG +G IGHKNLVFSTVGD RVF+ LP+ +VKPA ALSLH T   LR  LL +A    P  LV
Sbjct:  101 STQVGCAVGCVFCMTGRAGLLRQLSGAEIVAQVVLARSRRPVRKVVFMGMGEPAHNLDNVLDAIELLGLEGGIGHKNLVFSTVGDRRVFERLPQSTVKPARALSLHTTDRALRRRLLPRAPDIAPQELV 229          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_SYNP2 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rlmN PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.869e-15
Identity = 48/108 (44.44%), Postives = 66/108 (61.11%), Query Frame = 3
Query:   66 TGKSGLIRQVASMEILAQVVLARR--LRAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLLHQA 383
            TGKSG  R + + EI+ QV+  +    + V  VVFMGMGEP  NL+ VL++I  L  D  IG ++L  STVG P    AL +Q+++  LA+SLHA    LRE ++  A
Sbjct:  120 TGKSGFTRHLQAHEIIDQVLTVQTDFQQRVSHVVFMGMGEPLANLEQVLKSIQSLNQDIGIGQRSLTVSTVGVPDQIRALAQQNLQITLAVSLHAPNQALRESIIPTA 227          

HSP 2 Score: 21.9422 bits (45), Expect = 2.869e-15
Identity = 8/15 (53.33%), Postives = 10/15 (66.67%), Query Frame = 2
Query:   29 QVGCAVGCRFSFDGQ 73
            QVGCA+ C F   G+
Sbjct:  108 QVGCAMACDFCATGK 122          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_THEEB (Ribosomal RNA large subunit methyltransferase N OS=Thermosynechococcus elongatus (strain BP-1) GN=rlmN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.033e-15
Identity = 52/122 (42.62%), Postives = 67/122 (54.92%), Query Frame = 3
Query:   24 STKSAAPWAVVSRLTGKSGLIRQVASMEILAQV--VLARRLRAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLLHQA 383
            S++   P A     TGK G  R +A  EIL QV  + +   R V  VVFMGMGEP  NL  VL+AI  L  D  IG +++  STVG P+    L +  ++  LA+SLHA    LRE L+  A
Sbjct:  103 SSQVGCPMACDFCATGKGGYRRNLACHEILDQVLTIQSEMGRRVSHVVFMGMGEPLLNLPAVLQAITCLNRDIGIGQRHITISTVGIPQQIQRLAQHQLQTTLAVSLHAPNQALREQLIPSA 224          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_SYNJB (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. GN=rlmN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.033e-15
Identity = 52/123 (42.28%), Postives = 69/123 (56.10%), Query Frame = 3
Query:   24 STKSAAPWAVVSRLTGKSGLIRQVASMEILAQVVLARRL--RAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLLHQAS 386
            S++   P A     TGK G  R +   EIL QV+  +    R V  VVFMGMGEP  N D V++AI  L  D  IG +++  STVG PR    L +Q ++  LA+SLHA   +LR+ L+  AS
Sbjct:  108 SSQVGCPMACDFCATGKMGYRRNLELHEILDQVLTVQEDFGRRVSHVVFMGMGEPLLNRDTVVQAIRSLNQDIGIGQRHITLSTVGVPRQIAWLAQQDLQVTLAVSLHAPNQDLRQRLIPSAS 230          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_SYNJA (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain JA-3-3Ab) GN=rlmN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.033e-15
Identity = 52/123 (42.28%), Postives = 69/123 (56.10%), Query Frame = 3
Query:   24 STKSAAPWAVVSRLTGKSGLIRQVASMEILAQVVLARRL--RAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLLHQAS 386
            S++   P A     TGK G  R +   EIL QV+  +    R V  VVFMGMGEP  N D V++AI  L  D  IG +++  STVG PR    L +Q ++  LA+SLHA   ELR+ L+  A+
Sbjct:  108 SSQVGCPMACNFCATGKMGYRRNLKLHEILDQVLTVQEDFGRRVSHVVFMGMGEPLLNRDTVVQAIRSLNQDIGIGQRHITLSTVGVPRQIPWLAQQDLQITLAVSLHAPNQELRQQLIPSAA 230          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_SYNS9 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain CC9902) GN=rlmN PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.614e-14
Identity = 53/128 (41.41%), Postives = 69/128 (53.91%), Query Frame = 3
Query:   24 STKSAAPWAVVSRLTGKSGLIRQVASMEILAQVVLARRL--RAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDPRVFDALPRQSVKP------ALALSLHATRAELREHLLHQA 383
            S++   P A     TGKSGL R +A+ EI+ QV+  R    R    VVFMGMGEP  N + VLE I  L TD  IG + +  STVG P+    L   +++        LA+SLHA   +LRE L+  A
Sbjct:  107 SSQVGCPMACRFCATGKSGLQRSLATHEIVDQVLSVREAMDRRPSHVVFMGMGEPLLNSEAVLETIRCLNTDLGIGQRRITVSTVGVPKTLPQLAELAMEKLGRAQFTLAVSLHAPNQQLREELIPTA 234          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_SYNS3 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain CC9311) GN=rlmN PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.459e-14
Identity = 53/128 (41.41%), Postives = 68/128 (53.12%), Query Frame = 3
Query:   24 STKSAAPWAVVSRLTGKSGLIRQVASMEILAQVVLARRL--RAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDPRVFDALPRQSVKP------ALALSLHATRAELREHLLHQA 383
            S++   P A     TGK GL R +A  EI+AQV+  R +  R    VVFMGMGEP  N++ VLE+I  L  D  IG + +  STVG P     L   ++K        LA+SLHA    LRE L+  A
Sbjct:  107 SSQVGCPMACRFCATGKGGLQRSLAGHEIVAQVLSIREVMERRPSHVVFMGMGEPLLNIEAVLESIRCLNDDLGIGQRRITVSTVGVPHTLPRLADLALKQLGRAQFTLAVSLHAPNQALREELIPTA 234          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_CYAP8 (Ribosomal RNA large subunit methyltransferase N OS=Cyanothece sp. (strain PCC 8801) GN=rlmN PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.459e-14
Identity = 48/122 (39.34%), Postives = 69/122 (56.56%), Query Frame = 3
Query:   24 STKSAAPWAVVSRLTGKSGLIRQVASMEILAQVVLARR--LRAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLLHQA 383
            S++   P A     TGK G  R + + EI+ QV+  +    R V  VVFMGMGEP  NL+ V++++ +L  D  IG ++L  STVG P+    L    ++  LA+SLHA+   LRE L+  A
Sbjct:  108 SSQVGCPMACDFCATGKGGYQRHLRAHEIVDQVLTVQEDFQRRVSHVVFMGMGEPLLNLEEVVKSVKILNQDIGIGQRSLTISTVGLPQKIIQLAHHHLQVTLAVSLHASNQPLRETLIPSA 229          
The following BLAST results are available for this feature:
BLAST of EY735524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
Y3613_METPP7.554e-3866.67Probable RNA methyltransferase Mpe_A3613 OS=Methyl... [more]
Y1157_DECAR1.063e-3768.97Probable RNA methyltransferase Daro_1157 OS=Dechlo... [more]
Y1951_THIDA2.687e-3562.02Probable RNA methyltransferase Tbd_1951 OS=Thiobac... [more]
RLMN_SYNP22.869e-1544.44Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_THEEB4.033e-1542.62Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNJB4.033e-1542.28Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNJA4.033e-1542.28Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNS92.614e-1441.41Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNS34.459e-1441.41Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_CYAP84.459e-1439.34Ribosomal RNA large subunit methyltransferase N OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-090-E12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735524 ID=EY735524; Name=EY735524; organism=Citrus sinensis; type=EST; length=937bp
GTCCCGGGTCCCGGATTCCCGGGTCGACCAAGTCGGCTGCGCCGTGGGCT
GTCGTTTCTCGTTTGACGGGCAAGAGCGGCCTGATCCGTCAGGTCGCCAG
CATGGAGATCCTGGCCCAGGTGGTGCTGGCGCGGCGCTTGCGCGCGGTGA
AGAAGGTCGTTTTCATGGGTATGGGCGAACCGGCGCACAACCTCGACAAC
GTGCTCGAGGCCATCAATCTGCTCGGCACCGACGGCAATATCGGCCACAA
GAACCTGGTGTTCTCCACCGTGGGCGATCCGCGCGTGTTCGACGCGTTGC
CGCGGCAATCCGTCAAGCCCGCGCTGGCGCTGTCGCTGCATGCGACACGG
GCCGAGCTGCGCGAGCACCTGCTGCATCAAGCGTCGATAAACGTGCCCTG
AAGTCTTGTTTGGATCTGGGTGAATATGTTATGTCAAAGAGAACCGAGCA
TACCCAATCGAAAAAATGAGGGACATTTGATTCTAATACAGGACAATGTA
GATAAATTATGAGAAAAGGACTCGATACAATATACTAGATTACCAGAATA
AGTTTGACAAAAGGCAATACTGACAATCCAACACAGACTACCCCCCAAGA
TGGCAATATTATAGGTAGAACAGCAATTAATGAGATAGAAGATTATTATA
GGGGATGATACTTAATTGTGCATTATGAGAGCTTAGGTGTAGAAGTGACC
ATGCAATGGGCAAGAAAGAGGGATAGGGCTGGTGGGGAGTGAATATATAA
TAATGAAATCATAGATAATTTCAAGAAAACGTATAAATTAAATAATGAAC
ACGATTGATGGAGAAAATGCAGGAAACAAAATAGAATCAAAAAATGTTAA
ACAAACACAAATATATCAAAAAAAAAATTATTCAAAATATATATTATAAA
ACAAAAATGAATATTTAAATCAATCTGTACGATATCG
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