EY735524

Overview
NameEY735524
Unique NameEY735524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length937
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_PROMM (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain MIT 9313) GN=rlmN PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.874e-12
Identity = 51/128 (39.84%), Postives = 66/128 (51.56%), Query Frame = 3
Query:   24 STKSAAPWAVVSRLTGKSGLIRQVASMEILAQVVLARRL--RAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDPRVFDALPRQSVKP------ALALSLHATRAELREHLLHQA 383
            S++   P A     +GK GL R +A+ EI+ QV+  R    R    VVFMGMGEP  N++ VL AI  L  D  I  + +  STVG P     L   ++K        LA+SLHA   ELRE L+  A
Sbjct:  115 SSQVGCPMACRFCASGKGGLQRSLATHEIVDQVLSLREAMDRRPSHVVFMGMGEPLLNIEAVLAAIRCLNIDLGIAQRRITVSTVGVPHTLPHLAELAMKRLGRAQFTLAVSLHAPNQELRERLIPTA 242          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_PROM1 (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain NATL1A) GN=rlmN PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.874e-12
Identity = 50/129 (38.76%), Postives = 67/129 (51.94%), Query Frame = 3
Query:   24 STKSAAPWAVVSRLTGKSGLIRQVASMEILAQVVLARRL--RAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDPRVFDALPRQS------VKPALALSLHATRAELREHLLHQAS 386
            S++   P       TGK GL R +   EI+ QV+  R    R    VVFMGMGEP  N+ NVL++I  L +D  IG + +  STVG P     L + +      V+  LA+SLHA    LRE ++  AS
Sbjct:  115 SSQIGCPMGCKFCATGKGGLNRSLDVNEIVDQVISVRETMNRRPTHVVFMGMGEPLLNIQNVLDSIECLTSDIGIGQRKITVSTVGIPNTLSDLAKLAQDRLGRVQFTLAVSLHAPNQTLRELIIPSAS 243          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_ANASP (Ribosomal RNA large subunit methyltransferase N OS=Anabaena sp. (strain PCC 7120) GN=rlmN PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.874e-12
Identity = 48/122 (39.34%), Postives = 62/122 (50.82%), Query Frame = 3
Query:   24 STKSAAPWAVVSRLTGKSGLIRQVASMEILAQVVLARR--LRAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLLHQA 383
            ST+   P A     TGK G  R +   EI+ QV+  +    + V  VVFMGMGEP  N +NVL  +  L  D  IG ++L  STVG       L    ++  LA+SLHA    LRE L+  A
Sbjct:  122 STQVGCPMACDFCATGKGGYKRNLERHEIVDQVLTVQEDFQQRVSHVVFMGMGEPLLNTENVLAGLRSLNQDVGIGQRSLTLSTVGIRDRISELAEHHLQVTLAVSLHAPNQALREQLIPSA 243          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_DICTD (Ribosomal RNA large subunit methyltransferase N OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rlmN PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.989e-12
Identity = 41/111 (36.94%), Postives = 69/111 (62.16%), Query Frame = 3
Query:   66 TGKSGLIRQVASMEILAQVV-----LARRLRAVKKVVFMGMGEPAHNLDNVLEAINLLGTDG--NIGHKNLVFSTVG-DPRVFDALPRQSVKPALALSLHATRAELREHLL 374
            TG  GL R + + EI+ Q++     L ++   +  VV+MGMGEP  N DNV+++I ++  +   NIG K++  ST+G  P+++  L  +++K  LA+SLHA+  ELR  ++
Sbjct:  118 TGLIGLKRNLETHEIIGQLMVIQEDLEKKEEKISNVVYMGMGEPLANYDNVIKSIRIIKEEWGFNIGSKHITLSTIGIIPKIYQ-LAEENLKIRLAISLHASNNELRSKII 227          

HSP 2 Score: 24.2534 bits (51), Expect = 1.989e-12
Identity = 8/14 (57.14%), Postives = 10/14 (71.43%), Query Frame = 2
Query:   29 QVGCAVGCRFSFDG 70
            QVGC +GC+F   G
Sbjct:  106 QVGCPIGCKFCATG 119          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_SYNSC (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain CC9605) GN=rlmN PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.447e-12
Identity = 50/128 (39.06%), Postives = 65/128 (50.78%), Query Frame = 3
Query:   24 STKSAAPWAVVSRLTGKSGLIRQVASMEILAQVVLARRL--RAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDPRVFDALPRQSVKP------ALALSLHATRAELREHLLHQA 383
            S++   P A     TGK GL R + + EI+ QV+  R    R    +VFMGMGEP  N   VLEAI  L  D  IG + +  STVG P+    L   +++        LA+SLHA    LRE L+  A
Sbjct:  107 SSQVGCPMACRFCATGKGGLQRSLQTHEIVDQVLSVREAMDRRPSHIVFMGMGEPLLNSSAVLEAIRCLNDDLGIGQRRITVSTVGVPKTLPQLAELAMQRLGRAQFTLAVSLHAPNQRLREELIPTA 234          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_PROM3 (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain MIT 9303) GN=rlmN PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.196e-12
Identity = 50/128 (39.06%), Postives = 66/128 (51.56%), Query Frame = 3
Query:   24 STKSAAPWAVVSRLTGKSGLIRQVASMEILAQVVLARRL--RAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDPRVFDALPRQSVKP------ALALSLHATRAELREHLLHQA 383
            S++   P A     +GK GL R +A+ EI+ QV+  R    R    VVFMGMGEP  N++ VL +I  L  D  I  + +  STVG P     L   ++K        LA+SLHA   ELRE L+  A
Sbjct:  115 SSQVGCPMACRFCASGKGGLQRSLATHEIVDQVLSLREAMDRRPSHVVFMGMGEPLLNIEAVLASIRCLNIDLGIAQRRITVSTVGVPHTLPQLAELAMKRLGRAQFTLAVSLHAPNQELRERLIPTA 242          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_MICAN (Ribosomal RNA large subunit methyltransferase N OS=Microcystis aeruginosa (strain NIES-843) GN=rlmN PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.196e-12
Identity = 45/122 (36.89%), Postives = 65/122 (53.28%), Query Frame = 3
Query:   24 STKSAAPWAVVSRLTGKSGLIRQVASMEILAQVVLARR--LRAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLLHQA 383
            S++   P A     TGK G  R + + EI+ QV+  +    + V  VVFMGMGEP  N+  V+ AI+ L  D  IG + L  STVG P     L   +++   A+SLHA+  ++R  L+  A
Sbjct:  103 SSQVGCPMACDFCATGKGGFTRNLKAHEIVDQVLTVQEDFQQRVSHVVFMGMGEPLLNIPEVVTAIHCLNKDVGIGQRCLTISTVGLPHKIKQLAEHNLQITFAVSLHASNQQVRAKLIPSA 224          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_PROMA (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus GN=rlmN PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.174e-12
Identity = 55/140 (39.29%), Postives = 73/140 (52.14%), Query Frame = 3
Query:   24 STKSAAPWAVVSRLTGKSGLIRQVASMEILAQVVLARRL--RAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDPRVFDALPR---------QSVKPALALSLHATRAELREHLLHQASINVP*SLV 410
            S++   P       TGK GL R +   EI+AQV   ++   R+   VVFMGMGEP  N++ VL +I  L  D  IG + +  STVG   V + LP+          SV+  LALSLHA   +LRE L+  A  N P  L+
Sbjct:  110 SSQIGCPMGCQFCATGKDGLKRSLKVNEIVAQVFAVKKAFNRSPSNVVFMGMGEPLLNIEEVLSSICCLNKDLGIGQRRITVSTVG---VKNTLPQLAELALQFLGSVQFTLALSLHAPNQKLRESLIPSAQ-NYPIKLL 245          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_SYNY3 (Ribosomal RNA large subunit methyltransferase N OS=Synechocystis sp. (strain PCC 6803) GN=rlmN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.354e-12
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = 3
Query:   66 TGKSGLIRQVASMEILAQVVLARRL--RAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLLHQA 383
            TGK G IR + S EI+ QV+  +      V  VVFMGMGEP  NL  V++A+  L     IG + L  STVG P     L  + ++   A+SLHA    LR+ L+  A
Sbjct:  122 TGKGGFIRNLESHEIVDQVLTVQEEFHERVSNVVFMGMGEPLLNLPQVVKAVECLNQVVGIGQRALTISTVGLPGKIRQLADRHLQVTFAVSLHAPNQTLRQSLIPSA 229          

HSP 2 Score: 22.3274 bits (46), Expect = 4.354e-12
Identity = 8/15 (53.33%), Postives = 10/15 (66.67%), Query Frame = 2
Query:   29 QVGCAVGCRFSFDGQ 73
            QVGCA+ C F   G+
Sbjct:  110 QVGCAMDCNFCATGK 124          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_SYNPX (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain WH8102) GN=rlmN PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.451e-12
Identity = 49/128 (38.28%), Postives = 65/128 (50.78%), Query Frame = 3
Query:   24 STKSAAPWAVVSRLTGKSGLIRQVASMEILAQVVLARRL--RAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDPRVFDALPRQSVKP------ALALSLHATRAELREHLLHQA 383
            S++   P A     TGK GL R + + EI+ QV+  R +  R    +VFMGMGEP  N   VL+AI  L  D  IG + +  STVG P+    L   ++         LA+SLHA    LRE L+  A
Sbjct:  104 SSQVGCPMACRFCATGKGGLQRSLRTHEIVDQVLSVREVMDRRPSHIVFMGMGEPLLNSQAVLDAIRCLNDDLGIGQRRITVSTVGVPKTLPQLAELALATLGRAQFTLAVSLHAPNQALREELIPTA 231          
The following BLAST results are available for this feature:
BLAST of EY735524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RLMN_PROMM1.874e-1239.84Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PROM11.874e-1238.76Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_ANASP1.874e-1239.34Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_DICTD1.989e-1236.94Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNSC2.447e-1239.06Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PROM33.196e-1239.06Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_MICAN3.196e-1236.89Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PROMA4.174e-1239.29Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNY34.354e-1240.74Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNPX5.451e-1238.28Ribosomal RNA large subunit methyltransferase N OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-090-E12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735524 ID=EY735524; Name=EY735524; organism=Citrus sinensis; type=EST; length=937bp
GTCCCGGGTCCCGGATTCCCGGGTCGACCAAGTCGGCTGCGCCGTGGGCT
GTCGTTTCTCGTTTGACGGGCAAGAGCGGCCTGATCCGTCAGGTCGCCAG
CATGGAGATCCTGGCCCAGGTGGTGCTGGCGCGGCGCTTGCGCGCGGTGA
AGAAGGTCGTTTTCATGGGTATGGGCGAACCGGCGCACAACCTCGACAAC
GTGCTCGAGGCCATCAATCTGCTCGGCACCGACGGCAATATCGGCCACAA
GAACCTGGTGTTCTCCACCGTGGGCGATCCGCGCGTGTTCGACGCGTTGC
CGCGGCAATCCGTCAAGCCCGCGCTGGCGCTGTCGCTGCATGCGACACGG
GCCGAGCTGCGCGAGCACCTGCTGCATCAAGCGTCGATAAACGTGCCCTG
AAGTCTTGTTTGGATCTGGGTGAATATGTTATGTCAAAGAGAACCGAGCA
TACCCAATCGAAAAAATGAGGGACATTTGATTCTAATACAGGACAATGTA
GATAAATTATGAGAAAAGGACTCGATACAATATACTAGATTACCAGAATA
AGTTTGACAAAAGGCAATACTGACAATCCAACACAGACTACCCCCCAAGA
TGGCAATATTATAGGTAGAACAGCAATTAATGAGATAGAAGATTATTATA
GGGGATGATACTTAATTGTGCATTATGAGAGCTTAGGTGTAGAAGTGACC
ATGCAATGGGCAAGAAAGAGGGATAGGGCTGGTGGGGAGTGAATATATAA
TAATGAAATCATAGATAATTTCAAGAAAACGTATAAATTAAATAATGAAC
ACGATTGATGGAGAAAATGCAGGAAACAAAATAGAATCAAAAAATGTTAA
ACAAACACAAATATATCAAAAAAAAAATTATTCAAAATATATATTATAAA
ACAAAAATGAATATTTAAATCAATCTGTACGATATCG
back to top