EY735524

Overview
NameEY735524
Unique NameEY735524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length937
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_PROM2 (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain MIT 9215) GN=rlmN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.656e-12
Identity = 41/114 (35.96%), Postives = 64/114 (56.14%), Query Frame = 3
Query:   66 TGKSGLIRQVASMEILAQVVLARRL--RAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDPRVFDALPRQSVKP------ALALSLHATRAELREHLLHQA 383
            TGK GL R + + EIL Q++       R V  +VFMGMGEP  N+D++L +I  +  D  I  + +  STV  P++ + L  +S +        LA+SLHA+  ++RE ++  A
Sbjct:  122 TGKEGLKRSLKASEILDQILFIENEMNRKVTNIVFMGMGEPLLNIDDLLVSIRSINKDFQISQRKITVSTVAVPKMINKLSAKSFQILGNCQFTLAISLHASNQKIRETIIPSA 235          

HSP 2 Score: 23.0978 bits (48), Expect = 5.656e-12
Identity = 8/16 (50.00%), Postives = 11/16 (68.75%), Query Frame = 2
Query:   29 QVGCAVGCRFSFDGQE 76
            QVGC + C+F   G+E
Sbjct:  110 QVGCPMDCKFCATGKE 125          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_THELT (Ribosomal RNA large subunit methyltransferase N OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=rlmN PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.298e-12
Identity = 42/121 (34.71%), Postives = 70/121 (57.85%), Query Frame = 3
Query:   24 STKSAAPWAVVSRLTGKSGLIRQVASMEILAQVVLARR--LRAVKKVVFMGMGEPAHNLDNVLEAINLL--GTDGNIGHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLL 374
            ST+   P       TG+SG +R + + EI++Q++   +   + V+ +V+MGMGEP  N DNV+++I +L      NIG + +  STVG P +   L  + +   LA+SLHA+  E R+ ++
Sbjct:  105 STQIGCPVKCSFCATGQSGFVRNLDAGEIVSQILAIEKDSKQTVRNIVYMGMGEPLLNYDNVIKSIKILIDKKTKNIGIRRVTLSTVGIPEMILKLSEERLDLNLAISLHASTNEKRDQII 225          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_GLOVI (Ribosomal RNA large subunit methyltransferase N OS=Gloeobacter violaceus GN=rlmN PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.298e-12
Identity = 47/122 (38.52%), Postives = 65/122 (53.28%), Query Frame = 3
Query:   24 STKSAAPWAVVSRLTGKSGLIRQVASMEILAQVVLARRL--RAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLLHQA 383
            S++   P A     TG+SG  R +   EI+ QV+  +    R V  VVFMGMGEP  NL  V++A+ +L  D  IG + +  STVG P     L    ++  LA+SLHA   +LR  L+  A
Sbjct:  105 SSQVGCPMACRFCATGQSGFARNLGVHEIVDQVLTVQEGFGRRVSHVVFMGMGEPLLNLGAVVQALRVLNGDIGIGQRQITVSTVGVPGQIRRLGTYKLQITLAVSLHAPNQDLRLKLIPTA 226          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_CHLCH (Ribosomal RNA large subunit methyltransferase N OS=Chlorobium chlorochromatii (strain CaD3) GN=rlmN PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.298e-12
Identity = 46/133 (34.59%), Postives = 69/133 (51.88%), Query Frame = 3
Query:   24 STKSAAPWAVVSRLTGKSGLIRQVASMEILAQVVLARRL-----RAVKKVVFMGMGEPAHNLDNVLEAINLLGTDG---NIGHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLLHQASINVP 398
            S+++  P       TG  GL R +++ EI  Q+     L     + +  VVFMGMGEP  N DNVLEAI  + +     ++  + +  STVG     + L R  +K  LA+SLH+ R E+R+ L+  A+   P
Sbjct:  122 SSQAGCPMQCTFCATGTMGLQRNLSAGEIWEQLYALNGLALQEGKTITNVVFMGMGEPLLNTDNVLEAIATMSSRNYNLSLSQRKITISTVGIVPEIERLSRSGLKTKLAVSLHSARQEVRQQLMPIAAERYP 254          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_THESQ (Ribosomal RNA large subunit methyltransferase N OS=Thermotoga sp. (strain RQ2) GN=rlmN PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.214e-11
Identity = 44/121 (36.36%), Postives = 66/121 (54.55%), Query Frame = 3
Query:   24 STKSAAPWAVVSRLTGKSGLIRQVASMEILAQVVLARR--LRAVKKVVFMGMGEPAHNLDNVLEAINLLGTD--GNIGHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLL 374
            ST+   P   +   TG SG +R + + EI+AQ++   R   + +  VV+MGMGEP  N +N +++I +L     GNIG + +  STVG P     L  + +   LALSLHA     R+ L+
Sbjct:  106 STQVGCPVKCIFCATGMSGFVRNLTTGEIVAQILSMEREEKKKIGNVVYMGMGEPLLNYENTIKSIRILNHKKMGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLHAPTNFKRDQLV 226          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_THEM4 (Ribosomal RNA large subunit methyltransferase N OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rlmN PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.214e-11
Identity = 44/121 (36.36%), Postives = 65/121 (53.72%), Query Frame = 3
Query:   24 STKSAAPWAVVSRLTGKSGLIRQVASMEILAQVVLARRLRAVK--KVVFMGMGEPAHNLDNVLEAINLLGTDG--NIGHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLL 374
            ST+   P       TG+SG +R +   EI++Q++     R +K   VV+MGMGEP  N +NV+++I +L      NIG + +  STVG P    AL    +   LALSLHA     R+ ++
Sbjct:  106 STQVGCPVKCEFCATGQSGFVRNLTVGEIVSQILAIELNRKIKVGNVVYMGMGEPLLNFENVIDSIKMLNDKKMLNIGIRRITVSTVGIPEKIIALAESGLNVKLALSLHAVTDYKRDQII 226          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_CHLTE (Ribosomal RNA large subunit methyltransferase N OS=Chlorobium tepidum GN=rlmN PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.214e-11
Identity = 46/126 (36.51%), Postives = 63/126 (50.00%), Query Frame = 3
Query:   24 STKSAAPWAVVSRLTGKSGLIRQVASMEILAQVVLA------RRLRAVKKVVFMGMGEPAHNLDNVLEAINLLGTDG---NIGHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLL 374
            S++   P       TG  G  R + + EI  QV L       R  R +  +VFMGMGEP  NLDNVLE+I  L       +I  + +  STVG P   D + R  +K  LA+SLH+    +RE ++
Sbjct:  134 SSQIGCPLRCTFCATGHMGFRRNLTASEITDQVFLLEKEAQKRHWRGLTNIVFMGMGEPLLNLDNVLESIGTLTEKDYQFSISERKITISTVGLPVEMDRIARSGLKTKLAISLHSADQLIRERMM 259          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_HYPNA (Ribosomal RNA large subunit methyltransferase N OS=Hyphomonas neptunium (strain ATCC 15444) GN=rlmN PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.601e-11
Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = 3
Query:   66 TGKSGLIRQVASMEILAQVVLARRL----------RAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGN---IGHKNLVFSTVG-DPRVFDALPRQSVKPALALSLHATRAELREHLL 374
            TG   L+R + + EI+ QV++AR            R +  +VFMGMGEP +NLDNV EAI+ + +DG+   IG + +  ST G  P++ +   R      LA+SLHAT  +LR  L+
Sbjct:  140 TGTQALVRNLTAAEIVQQVIIARDALSEWPSSIEERRLTNIVFMGMGEPLYNLDNVAEAIDTI-SDGDGMAIGRRRITVSTAGVAPKIPELGERTGA--MLAISLHATNNDLRNELV 253          

HSP 2 Score: 21.1718 bits (43), Expect = 1.601e-11
Identity = 7/16 (43.75%), Postives = 9/16 (56.25%), Query Frame = 2
Query:   29 QVGCAVGCRFSFDGQE 76
            QVGC + C F   G +
Sbjct:  128 QVGCTLNCTFCHTGTQ 143          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: Y2859_RHOPS (Probable RNA methyltransferase RPD_2859 OS=Rhodopseudomonas palustris (strain BisB5) GN=RPD_2859 PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.605e-11
Identity = 39/105 (37.14%), Postives = 61/105 (58.10%), Query Frame = 3
Query:   66 TGKSGLIRQVASMEILAQVVLARRLRAVKKVVFMGMGEPAHNLDNVLEAINLL--GTDGNIGHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLL 374
            +G++GL+R + + EI+ QVV  R    V ++VFMG+GEP +N   VL+AI +L      N     +  ST+G P+    L  + +   L +SLHAT  E+R+ L+
Sbjct:  128 SGQAGLMRNLEAGEIVEQVV--RLGPKVNRIVFMGIGEPLNNYQQVLKAIRILRDRQGMNFPTTGITLSTIGIPKALKQLREEHLAINLTISLHATTQEVRDRLI 230          

HSP 2 Score: 25.7942 bits (55), Expect = 1.605e-11
Identity = 10/15 (66.67%), Postives = 10/15 (66.67%), Query Frame = 2
Query:   29 QVGCAVGCRFSFDGQ 73
            QVGCA  CRF   GQ
Sbjct:  116 QVGCAFACRFCASGQ 130          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_PROM0 (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain MIT 9301) GN=rlmN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.607e-11
Identity = 42/114 (36.84%), Postives = 62/114 (54.39%), Query Frame = 3
Query:   66 TGKSGLIRQVASMEILAQVVLARRL--RAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDPRVFDALPRQSVKP------ALALSLHATRAELREHLLHQA 383
            TGK GL R +   EIL Q++       R V  +VFMGMGEP  N+D++L +I  +  D  I  + +  STV  P++ + L  +S K        LA+SLHA   ++RE ++  A
Sbjct:  122 TGKEGLKRSLKVSEILDQILFIENEMNRKVTNIVFMGMGEPLLNIDDLLLSIRSINEDLKISQRKITVSTVAVPKMINKLSAKSFKILGNCQFTLAVSLHAPNQKIRETIIPSA 235          

HSP 2 Score: 23.0978 bits (48), Expect = 1.607e-11
Identity = 8/16 (50.00%), Postives = 11/16 (68.75%), Query Frame = 2
Query:   29 QVGCAVGCRFSFDGQE 76
            QVGC + C+F   G+E
Sbjct:  110 QVGCPMDCKFCATGKE 125          
The following BLAST results are available for this feature:
BLAST of EY735524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RLMN_PROM25.656e-1235.96Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_THELT9.298e-1234.71Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_GLOVI9.298e-1238.52Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_CHLCH9.298e-1234.59Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_THESQ1.214e-1136.36Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_THEM41.214e-1136.36Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_CHLTE1.214e-1136.51Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_HYPNA1.601e-1139.32Ribosomal RNA large subunit methyltransferase N OS... [more]
Y2859_RHOPS1.605e-1137.14Probable RNA methyltransferase RPD_2859 OS=Rhodops... [more]
RLMN_PROM01.607e-1136.84Ribosomal RNA large subunit methyltransferase N OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-090-E12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735524 ID=EY735524; Name=EY735524; organism=Citrus sinensis; type=EST; length=937bp
GTCCCGGGTCCCGGATTCCCGGGTCGACCAAGTCGGCTGCGCCGTGGGCT
GTCGTTTCTCGTTTGACGGGCAAGAGCGGCCTGATCCGTCAGGTCGCCAG
CATGGAGATCCTGGCCCAGGTGGTGCTGGCGCGGCGCTTGCGCGCGGTGA
AGAAGGTCGTTTTCATGGGTATGGGCGAACCGGCGCACAACCTCGACAAC
GTGCTCGAGGCCATCAATCTGCTCGGCACCGACGGCAATATCGGCCACAA
GAACCTGGTGTTCTCCACCGTGGGCGATCCGCGCGTGTTCGACGCGTTGC
CGCGGCAATCCGTCAAGCCCGCGCTGGCGCTGTCGCTGCATGCGACACGG
GCCGAGCTGCGCGAGCACCTGCTGCATCAAGCGTCGATAAACGTGCCCTG
AAGTCTTGTTTGGATCTGGGTGAATATGTTATGTCAAAGAGAACCGAGCA
TACCCAATCGAAAAAATGAGGGACATTTGATTCTAATACAGGACAATGTA
GATAAATTATGAGAAAAGGACTCGATACAATATACTAGATTACCAGAATA
AGTTTGACAAAAGGCAATACTGACAATCCAACACAGACTACCCCCCAAGA
TGGCAATATTATAGGTAGAACAGCAATTAATGAGATAGAAGATTATTATA
GGGGATGATACTTAATTGTGCATTATGAGAGCTTAGGTGTAGAAGTGACC
ATGCAATGGGCAAGAAAGAGGGATAGGGCTGGTGGGGAGTGAATATATAA
TAATGAAATCATAGATAATTTCAAGAAAACGTATAAATTAAATAATGAAC
ACGATTGATGGAGAAAATGCAGGAAACAAAATAGAATCAAAAAATGTTAA
ACAAACACAAATATATCAAAAAAAAAATTATTCAAAATATATATTATAAA
ACAAAAATGAATATTTAAATCAATCTGTACGATATCG
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