EY735524

Overview
NameEY735524
Unique NameEY735524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length937
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_THEMA (Ribosomal RNA large subunit methyltransferase N OS=Thermotoga maritima GN=rlmN PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.705e-11
Identity = 43/121 (35.54%), Postives = 66/121 (54.55%), Query Frame = 3
Query:   24 STKSAAPWAVVSRLTGKSGLIRQVASMEILAQVVLARR--LRAVKKVVFMGMGEPAHNLDNVLEAINLLGTD--GNIGHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLL 374
            ST+   P   +   TG SG +R + + EI+AQ++   +   + +  VV+MGMGEP  N +N +++I +L     GNIG + +  STVG P     L  + +   LALSLHA     R+ L+
Sbjct:  106 STQVGCPVKCIFCATGMSGFVRNLTTGEIVAQILSMEKEEKKKIGNVVYMGMGEPLLNYENTIKSIRILNHKKMGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLHAPTNFKRDQLV 226          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_PROMS (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain AS9601) GN=rlmN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.708e-11
Identity = 41/114 (35.96%), Postives = 61/114 (53.51%), Query Frame = 3
Query:   66 TGKSGLIRQVASMEILAQVVLAR--RLRAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDPRVFDALPRQSVKP------ALALSLHATRAELREHLLHQA 383
            TGK GL R + + EIL Q++       R V  +VFMGMGEP  N+D +L +I  +  D  I  + +  STV  P++   L  +S +        LA+SLHA+  + RE ++  A
Sbjct:  122 TGKEGLKRSLKASEILDQILFIEYEMNRKVTNIVFMGMGEPLLNIDELLLSIRSINNDFQISQRKITVSTVAIPKMISKLSAKSFQILSNCQFTLAISLHASNQKTRETIIPSA 235          

HSP 2 Score: 23.0978 bits (48), Expect = 2.708e-11
Identity = 8/16 (50.00%), Postives = 11/16 (68.75%), Query Frame = 2
Query:   29 QVGCAVGCRFSFDGQE 76
            QVGC + C+F   G+E
Sbjct:  110 QVGCPMDCKFCATGKE 125          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_PROM9 (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain MIT 9312) GN=rlmN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.708e-11
Identity = 41/114 (35.96%), Postives = 61/114 (53.51%), Query Frame = 3
Query:   66 TGKSGLIRQVASMEILAQVVLARRL--RAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDPRVFDALPRQSVKP------ALALSLHATRAELREHLLHQA 383
            TGK GL R + + EIL Q++       R V  +VFMGMGEP  N+D +L +I  +  D  I  + +  STV  P++   L  +S +        LA+SLHA+  + RE ++  A
Sbjct:  122 TGKEGLKRSLKASEILDQILFIENEMNRKVTNIVFMGMGEPLLNIDELLLSIRSINEDFQISQRKITVSTVAVPKMMSKLSARSFQILGNCQFTLAISLHASNQKTRETIIPSA 235          

HSP 2 Score: 23.0978 bits (48), Expect = 2.708e-11
Identity = 8/16 (50.00%), Postives = 11/16 (68.75%), Query Frame = 2
Query:   29 QVGCAVGCRFSFDGQE 76
            QVGC + C+F   G+E
Sbjct:  110 QVGCPMDCKFCATGKE 125          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_PROAC (Ribosomal RNA large subunit methyltransferase N OS=Propionibacterium acnes GN=rlmN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.498e-11
Identity = 46/117 (39.32%), Postives = 64/117 (54.70%), Query Frame = 3
Query:   66 TGKSGLIRQVASMEILAQVVLARRLRA----------VKKVVFMGMGEPAHNLDNVLEAINLLGTDG----NIGHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLL 374
            TG+ G+ R +++ EI++QV+ A RL A          V  +VFMGMGEP  N  +VL AI  L  DG     +  + L  STVG      AL ++ +   LA+SLHA   ELR+ L+
Sbjct:  165 TGQGGIQRNMSTAEIVSQVLAANRLIAAGEVPGASGRVHNIVFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTLAVSLHAPDDELRDELI 281          

HSP 2 Score: 20.4014 bits (41), Expect = 3.498e-11
Identity = 7/15 (46.67%), Postives = 8/15 (53.33%), Query Frame = 2
Query:   29 QVGCAVGCRFSFDGQ 73
            Q GC + C F   GQ
Sbjct:  153 QAGCGMACPFCATGQ 167          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_SYNR3 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain RCC307) GN=rlmN PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.533e-11
Identity = 49/128 (38.28%), Postives = 65/128 (50.78%), Query Frame = 3
Query:   24 STKSAAPWAVVSRLTGKSGLIRQVASMEILAQVVLARRL--RAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDPRVFDALPRQSVKP------ALALSLHATRAELREHLLHQA 383
            S++   P A     TGK GL R +   EI+ QV+  R +  R    VVFMGMGEP  N D+VL AI+ L  D  +  + +  STVG P     L   +++        LA+SLHA    LRE L+  A
Sbjct:  105 SSQVGCPMACRFCATGKEGLQRSLEPHEIVDQVLTVREVMQRRPSHVVFMGMGEPLLNSDHVLTAIDCLSRDLGMAMRQITVSTVGVPNTLPRLAELALERLGRAQFTLAVSLHAPDQALREELIPTA 232          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_PHEZH (Ribosomal RNA large subunit methyltransferase N OS=Phenylobacterium zucineum (strain HLK1) GN=rlmN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.549e-11
Identity = 45/115 (39.13%), Postives = 64/115 (55.65%), Query Frame = 3
Query:   66 TGKSGLIRQVASMEILAQVVLAR----------RLRAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGN--IGHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLL 374
            TG   L+R + + EI+AQV +AR            R +  +VFMGMGEP +NLDNV  AI+++  +    I  + +  ST G      AL  ++ +  LA+SLHAT  ELRE L+
Sbjct:  143 TGTQALVRNLTAAEIVAQVQVARDDLGEWPSPKEDRRLSNIVFMGMGEPLYNLDNVAAAIDIIADNEGIAISRRRITVSTSGVVPELAALGERT-QAMLAISLHATNDELREKLV 256          

HSP 2 Score: 21.1718 bits (43), Expect = 4.549e-11
Identity = 7/16 (43.75%), Postives = 9/16 (56.25%), Query Frame = 2
Query:   29 QVGCAVGCRFSFDGQE 76
            QVGC + C F   G +
Sbjct:  131 QVGCTLNCTFCHTGTQ 146          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_SYNE7 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus elongatus (strain PCC 7942) GN=rlmN PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.559e-11
Identity = 46/111 (41.44%), Postives = 59/111 (53.15%), Query Frame = 3
Query:   66 TGKSGLIRQVASMEILAQVVLARR--LRAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDP---RVFDALPRQSVKP---ALALSLHATRAELREHLL 374
            TGK G  R +A  EI+ QV+  +    + V  +VFMGMGEP  NLD VL AI  L  D  IG + +  STVG P   R      R   +P    LA+SLHA    +R+ L+
Sbjct:  131 TGKGGFRRHLAPHEIIDQVLTVQEDWQQRVSNIVFMGMGEPLLNLDAVLAAIRCLNQDIGIGQRGITVSTVGIPGHIRRLAETKRVGDRPLQFTLAVSLHAPNQAIRDRLI 241          

HSP 2 Score: 20.7866 bits (42), Expect = 4.559e-11
Identity = 7/15 (46.67%), Postives = 10/15 (66.67%), Query Frame = 2
Query:   29 QVGCAVGCRFSFDGQ 73
            Q+GCA+ C F   G+
Sbjct:  119 QLGCAMACDFCATGK 133          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_WOLSU (Ribosomal RNA large subunit methyltransferase N OS=Wolinella succinogenes GN=rlmN PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 4.559e-11
Identity = 41/110 (37.27%), Postives = 61/110 (55.45%), Query Frame = 3
Query:   66 TGKSGLIRQVASMEILAQVVLARRLRAVK-----KVVFMGMGEPAHNLDNVLEAINLLG-TDG-NIGHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLL 374
            T K G +R +++ EI+ Q+V  +RL A+       +V+MGMGEP  N +N+++AI +L   DG +I  K    ST G     + L    +   LA+SLHA   ELR  L+
Sbjct:  128 TAKGGFVRNLSAGEIVYQIVALKRLNALAPEKRVNIVYMGMGEPLDNFENLIQAIRILSELDGLSISTKRQTISTSGIAPKIEKLGALDLGVQLAISLHAVDDELRTRLI 237          

HSP 2 Score: 24.6386 bits (52), Expect = 4.559e-11
Identity = 9/12 (75.00%), Postives = 9/12 (75.00%), Query Frame = 2
Query:   29 QVGCAVGCRFSF 64
            QVGC VGC F F
Sbjct:  116 QVGCKVGCSFCF 127          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_SYNP6 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rlmN PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.563e-11
Identity = 46/111 (41.44%), Postives = 59/111 (53.15%), Query Frame = 3
Query:   66 TGKSGLIRQVASMEILAQVVLARR--LRAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDP---RVFDALPRQSVKP---ALALSLHATRAELREHLL 374
            TGK G  R +A  EI+ QV+  +    + V  +VFMGMGEP  NLD VL AI  L  D  IG + +  STVG P   R      R   +P    LA+SLHA    +R+ L+
Sbjct:  121 TGKGGFRRHLAPHEIIDQVLTVQEDWQQRVSNIVFMGMGEPLLNLDAVLAAIRCLNQDIGIGQRGITVSTVGIPGHIRRLAETKRVGDRPLQFTLAVSLHAPNQAIRDRLI 231          

HSP 2 Score: 20.7866 bits (42), Expect = 4.563e-11
Identity = 7/15 (46.67%), Postives = 10/15 (66.67%), Query Frame = 2
Query:   29 QVGCAVGCRFSFDGQ 73
            Q+GCA+ C F   G+
Sbjct:  109 QLGCAMACDFCATGK 123          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_AZOC5 (Ribosomal RNA large subunit methyltransferase N OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rlmN PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 5.894e-11
Identity = 48/125 (38.40%), Postives = 67/125 (53.60%), Query Frame = 3
Query:   66 TGKSGLIRQVASMEILAQVVLAR-RL-------------------RAVKKVVFMGMGEPAHNLDNVLEAINLL--GTDGNIGHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLL 374
            TG   L+R + + EI+AQV++AR RL                   R V  +VFMGMGEP +  D+V EAI +L  G    +G + +  ST G     + L R+ V P LA+SLHA R +LR+ L+
Sbjct:  150 TGTQRLVRNLTAAEIVAQVLVARDRLGDYPGRERAVGPGLPTEGDRLVTNIVFMGMGEPLYAYDSVAEAIEILADGDGLGLGKRRITVSTSGVVPEIEKLGRE-VGPMLAISLHAVRDDLRDVLV 273          

HSP 2 Score: 23.0978 bits (48), Expect = 5.894e-11
Identity = 8/17 (47.06%), Postives = 10/17 (58.82%), Query Frame = 2
Query:   29 QVGCAVGCRFSFDGQER 79
            QVGC + C F   G +R
Sbjct:  138 QVGCTLNCAFCHTGTQR 154          
The following BLAST results are available for this feature:
BLAST of EY735524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RLMN_THEMA2.705e-1135.54Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PROMS2.708e-1135.96Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PROM92.708e-1135.96Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PROAC3.498e-1139.32Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNR33.533e-1138.28Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PHEZH4.549e-1139.13Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNE74.559e-1141.44Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_WOLSU4.559e-1137.27Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNP64.563e-1141.44Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_AZOC55.894e-1138.40Ribosomal RNA large subunit methyltransferase N OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-090-E12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735524 ID=EY735524; Name=EY735524; organism=Citrus sinensis; type=EST; length=937bp
GTCCCGGGTCCCGGATTCCCGGGTCGACCAAGTCGGCTGCGCCGTGGGCT
GTCGTTTCTCGTTTGACGGGCAAGAGCGGCCTGATCCGTCAGGTCGCCAG
CATGGAGATCCTGGCCCAGGTGGTGCTGGCGCGGCGCTTGCGCGCGGTGA
AGAAGGTCGTTTTCATGGGTATGGGCGAACCGGCGCACAACCTCGACAAC
GTGCTCGAGGCCATCAATCTGCTCGGCACCGACGGCAATATCGGCCACAA
GAACCTGGTGTTCTCCACCGTGGGCGATCCGCGCGTGTTCGACGCGTTGC
CGCGGCAATCCGTCAAGCCCGCGCTGGCGCTGTCGCTGCATGCGACACGG
GCCGAGCTGCGCGAGCACCTGCTGCATCAAGCGTCGATAAACGTGCCCTG
AAGTCTTGTTTGGATCTGGGTGAATATGTTATGTCAAAGAGAACCGAGCA
TACCCAATCGAAAAAATGAGGGACATTTGATTCTAATACAGGACAATGTA
GATAAATTATGAGAAAAGGACTCGATACAATATACTAGATTACCAGAATA
AGTTTGACAAAAGGCAATACTGACAATCCAACACAGACTACCCCCCAAGA
TGGCAATATTATAGGTAGAACAGCAATTAATGAGATAGAAGATTATTATA
GGGGATGATACTTAATTGTGCATTATGAGAGCTTAGGTGTAGAAGTGACC
ATGCAATGGGCAAGAAAGAGGGATAGGGCTGGTGGGGAGTGAATATATAA
TAATGAAATCATAGATAATTTCAAGAAAACGTATAAATTAAATAATGAAC
ACGATTGATGGAGAAAATGCAGGAAACAAAATAGAATCAAAAAATGTTAA
ACAAACACAAATATATCAAAAAAAAAATTATTCAAAATATATATTATAAA
ACAAAAATGAATATTTAAATCAATCTGTACGATATCG
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