EY735524

Overview
NameEY735524
Unique NameEY735524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length937
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_GEOSL (Ribosomal RNA large subunit methyltransferase N OS=Geobacter sulfurreducens GN=rlmN PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 5.917e-11
Identity = 42/106 (39.62%), Postives = 61/106 (57.55%), Query Frame = 3
Query:   63 LTGKSGLIRQVASMEILAQVVLARRLRAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNI--GHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLL 374
            LTG   L R + + EI+ QV   +R   V+ +VFMGMGEP  NLDNV+ A+ ++  D  +    + +  ST G     + L R SV   LA+SL+AT  ELR+ ++
Sbjct:  121 LTGTFRLTRNLTTAEIVNQVCAVQRDVPVRNIVFMGMGEPLANLDNVIRALQIMLHDDGLQFSTRRITVSTAGLVPEMERLGR-SVTVNLAVSLNATTDELRDRIM 225          

HSP 2 Score: 23.483 bits (49), Expect = 5.917e-11
Identity = 9/17 (52.94%), Postives = 10/17 (58.82%), Query Frame = 2
Query:   29 QVGCAVGCRFSFDGQER 79
            QVGCA+ C F   G  R
Sbjct:  110 QVGCAMACEFCLTGTFR 126          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_THEP1 (Ribosomal RNA large subunit methyltransferase N OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rlmN PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.027e-11
Identity = 43/121 (35.54%), Postives = 65/121 (53.72%), Query Frame = 3
Query:   24 STKSAAPWAVVSRLTGKSGLIRQVASMEILAQVVLARR--LRAVKKVVFMGMGEPAHNLDNVLEAINLLGTD--GNIGHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLL 374
            ST+   P   +   TG SG +R + + EI+AQ++   +   + +  VV+MGMGEP  N +N +++I  L     GNIG + +  STVG P     L  + +   LALSLHA     R+ L+
Sbjct:  106 STQVGCPVKCIFCATGMSGFVRNLTTGEIVAQILSMEKEEKKKIGNVVYMGMGEPLLNYENTIKSIRTLNHKKMGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLHAPTNFKRDQLV 226          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_SYNWW (Ribosomal RNA large subunit methyltransferase N OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rlmN PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.027e-11
Identity = 42/129 (32.56%), Postives = 72/129 (55.81%), Query Frame = 3
Query:   24 STKSAAPWAVVSRLTGKSGLIRQVASMEILAQVV-----LARRLRA-----VKKVVFMGMGEPAHNLDNVLEAINLLGTDG--NIGHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLL 374
            ST+   P A     TG+SG  R + + EI+ Q +     L++RL++     +  VV+MGMGEP  N D V++++++L      N+G + +  ST G+      L +++++  LA+SLHA    LR+ L+
Sbjct:  114 STQVGCPIACSFCATGQSGFQRNLKAFEIIGQYLGSKKELSKRLKSPRAELISNVVYMGMGEPLLNYDEVIKSVHMLNDPRGINLGQRRITISTSGEVAGIKKLAQENIQLTLAISLHACDNSLRDQLI 242          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_SYNFM (Ribosomal RNA large subunit methyltransferase N OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rlmN PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 7.694e-11
Identity = 51/153 (33.33%), Postives = 74/153 (48.37%), Query Frame = 3
Query:   63 LTGKSGLIRQVASMEILAQVVLARR----LRAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNI--GHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLLHQASINVP*SLVWIWVNMLCQREPSIPNRKNEGHLILIQDNVD 503
            LTG  G  R +++ EI+ QV   +R       +  +VFMGMGEP  NLD+VL AI ++     +   H+ +  ST G       L R+S    LA+SLHA   ELR  L+   +   P     + V M   RE  +P RK      ++ D ++
Sbjct:  120 LTGSLGFKRNLSAAEIVDQVCQVQRDLGSRSRITNIVFMGMGEPLANLDSVLRAIRVIAEPNGMAFSHRRITLSTAGLVPQLRRLGRES-PVNLAVSLHAAENELRAELM-PVNRTYP-----LEVLMAACREYPLPPRKRITFEYILLDGIN 265          

HSP 2 Score: 26.1794 bits (56), Expect = 7.694e-11
Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = 2
Query:   29 QVGCAVGCRFSFDG 70
            QVGCA+GC+F   G
Sbjct:  109 QVGCALGCKFCLTG 122          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_THENN (Ribosomal RNA large subunit methyltransferase N OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rlmN PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.871e-11
Identity = 43/121 (35.54%), Postives = 64/121 (52.89%), Query Frame = 3
Query:   24 STKSAAPWAVVSRLTGKSGLIRQVASMEILAQVVLARRLRAVK--KVVFMGMGEPAHNLDNVLEAINLLGTD--GNIGHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLL 374
            ST+   P       TG SG +R + + EI++Q++   +    K   VV+MGMGEP  N +N +++I +L     GNIG + +  STVG P     L  + +   LALSLHA     R+ L+
Sbjct:  106 STQVGCPVGCTFCATGMSGFVRNLTTGEIVSQILSMEKEEGKKIGNVVYMGMGEPLLNYENTIKSIRILNHKKMGNIGIRRITISTVGIPEKIIQLADEGLDVKLALSLHAPTNFKRDQLV 226          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: Y6963_RHOBA (Probable RNA methyltransferase RB6963 OS=Rhodopirellula baltica GN=RB6963 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.952e-11
Identity = 44/110 (40.00%), Postives = 60/110 (54.55%), Query Frame = 3
Query:   66 TGKSGLIRQVASMEILAQVVLARRL-----RAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGH--KNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLL 374
            TGK G+ + +A+ EIL QVV A ++     R +  +VFMGMGEP HN  NV EAI LL    +       ++ STVG P     L ++     LALSLH+     RE ++
Sbjct:  119 TGKMGIAKNLATEEILDQVVQAGQILRGEDRRLSNIVFMGMGEPLHNEVNVTEAIELLTAPDHFARSPSTVLVSTVGVPAGMLRLAKRFPNLNLALSLHSADQTTREKII 228          

HSP 2 Score: 21.1718 bits (43), Expect = 9.952e-11
Identity = 7/15 (46.67%), Postives = 9/15 (60.00%), Query Frame = 2
Query:   29 QVGCAVGCRFSFDGQ 73
            Q+GCA  C F   G+
Sbjct:  107 QIGCAAACDFCATGK 121          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_HELPY (Ribosomal RNA large subunit methyltransferase N OS=Helicobacter pylori GN=rlmN PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 9.972e-11
Identity = 38/108 (35.19%), Postives = 55/108 (50.93%), Query Frame = 3
Query:   66 TGKSGLIRQVASMEILAQVVLARR-----LRAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLL 374
            T K G +R + + EI+ Q +L +      L     +VFMGMGEP +NLD V +AI +  T   I  K +  ST G       L  +++   LA+SLHA   + R  L+
Sbjct:  132 TQKGGFVRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLM 239          

HSP 2 Score: 24.2534 bits (51), Expect = 9.972e-11
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 2
Query:   29 QVGCAVGCRFSF 64
            Q+GC VGC F F
Sbjct:  120 QIGCQVGCSFCF 131          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_HELAH (Ribosomal RNA large subunit methyltransferase N OS=Helicobacter acinonychis (strain Sheeba) GN=rlmN PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 9.975e-11
Identity = 37/108 (34.26%), Postives = 55/108 (50.93%), Query Frame = 3
Query:   66 TGKSGLIRQVASMEILAQVVLARR-----LRAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLL 374
            T K G +R + + EI+ Q +L +      +     +VFMGMGEP +NLD V +AI +  T   I  K +  ST G       L  +++   LA+SLHA   + R  L+
Sbjct:  132 TQKGGFVRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISPKRITISTSGVADKIPILAEKNLGVQLAISLHAVDDKTRSSLI 239          

HSP 2 Score: 24.2534 bits (51), Expect = 9.975e-11
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 2
Query:   29 QVGCAVGCRFSF 64
            Q+GC VGC F F
Sbjct:  120 QIGCQVGCSFCF 131          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_PROMP (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rlmN PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 9.981e-11
Identity = 40/114 (35.09%), Postives = 60/114 (52.63%), Query Frame = 3
Query:   66 TGKSGLIRQVASMEILAQVVLARRL--RAVKKVVFMGMGEPAHNLDNVLEAINLLGTDGNIGHKNLVFSTVGDPRVFDALPRQSVKP------ALALSLHATRAELREHLLHQA 383
            TGK GL R +   EIL Q++       + V  +VFMGMGEP  N+D +L +I  +  D  I  + +  STV  P++   L   S +        LA+SLHA+  ++RE ++  A
Sbjct:  122 TGKEGLKRSLKVSEILDQILFIENQMNQKVSNIVFMGMGEPLLNIDELLLSIRSINEDFAISQRKITVSTVAIPKMISKLSELSFQVLGKCQFTLAISLHASNQKIREAIIPSA 235          

HSP 2 Score: 23.0978 bits (48), Expect = 9.981e-11
Identity = 8/16 (50.00%), Postives = 11/16 (68.75%), Query Frame = 2
Query:   29 QVGCAVGCRFSFDGQE 76
            QVGC + C+F   G+E
Sbjct:  110 QVGCPMDCKFCATGKE 125          
BLAST of EY735524 vs. ExPASy Swiss-Prot
Match: RLMN_CLONN (Ribosomal RNA large subunit methyltransferase N OS=Clostridium novyi (strain NT) GN=rlmN PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 9.987e-11
Identity = 37/103 (35.92%), Postives = 60/103 (58.25%), Query Frame = 3
Query:   78 GLIRQVASMEILAQVVLARR--LRAVKKVVFMGMGEPAHNLDNVLEAINLLGTDG--NIGHKNLVFSTVGDPRVFDALPRQSVKPALALSLHATRAELREHLL 374
            G++R + S EI+AQV+ A++     +  VV MG GEP  N DNV++ + L+  +   NIG +++  ST G       L  Q ++  LA+SLHA   E+R+ ++
Sbjct:  124 GVVRNLTSGEIIAQVLKAQKEICDRISNVVLMGSGEPLDNYDNVIKFLKLINDEDALNIGQRHITLSTCGIVPKIKELADQKMQITLAISLHAPNNEIRKSMM 226          

HSP 2 Score: 23.0978 bits (48), Expect = 9.987e-11
Identity = 11/25 (44.00%), Postives = 15/25 (60.00%), Query Frame = 2
Query:   29 QVGCAVGCRF---SFDGQERPDPSG 94
            Q+GC +GC+F   + DG  R   SG
Sbjct:  108 QIGCRMGCKFCASTVDGVVRNLTSG 132          
The following BLAST results are available for this feature:
BLAST of EY735524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RLMN_GEOSL5.917e-1139.62Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_THEP16.027e-1135.54Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNWW6.027e-1132.56Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNFM7.694e-1133.33Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_THENN7.871e-1135.54Ribosomal RNA large subunit methyltransferase N OS... [more]
Y6963_RHOBA9.952e-1140.00Probable RNA methyltransferase RB6963 OS=Rhodopire... [more]
RLMN_HELPY9.972e-1135.19Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_HELAH9.975e-1134.26Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PROMP9.981e-1135.09Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_CLONN9.987e-1135.92Ribosomal RNA large subunit methyltransferase N OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-090-E12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735524 ID=EY735524; Name=EY735524; organism=Citrus sinensis; type=EST; length=937bp
GTCCCGGGTCCCGGATTCCCGGGTCGACCAAGTCGGCTGCGCCGTGGGCT
GTCGTTTCTCGTTTGACGGGCAAGAGCGGCCTGATCCGTCAGGTCGCCAG
CATGGAGATCCTGGCCCAGGTGGTGCTGGCGCGGCGCTTGCGCGCGGTGA
AGAAGGTCGTTTTCATGGGTATGGGCGAACCGGCGCACAACCTCGACAAC
GTGCTCGAGGCCATCAATCTGCTCGGCACCGACGGCAATATCGGCCACAA
GAACCTGGTGTTCTCCACCGTGGGCGATCCGCGCGTGTTCGACGCGTTGC
CGCGGCAATCCGTCAAGCCCGCGCTGGCGCTGTCGCTGCATGCGACACGG
GCCGAGCTGCGCGAGCACCTGCTGCATCAAGCGTCGATAAACGTGCCCTG
AAGTCTTGTTTGGATCTGGGTGAATATGTTATGTCAAAGAGAACCGAGCA
TACCCAATCGAAAAAATGAGGGACATTTGATTCTAATACAGGACAATGTA
GATAAATTATGAGAAAAGGACTCGATACAATATACTAGATTACCAGAATA
AGTTTGACAAAAGGCAATACTGACAATCCAACACAGACTACCCCCCAAGA
TGGCAATATTATAGGTAGAACAGCAATTAATGAGATAGAAGATTATTATA
GGGGATGATACTTAATTGTGCATTATGAGAGCTTAGGTGTAGAAGTGACC
ATGCAATGGGCAAGAAAGAGGGATAGGGCTGGTGGGGAGTGAATATATAA
TAATGAAATCATAGATAATTTCAAGAAAACGTATAAATTAAATAATGAAC
ACGATTGATGGAGAAAATGCAGGAAACAAAATAGAATCAAAAAATGTTAA
ACAAACACAAATATATCAAAAAAAAAATTATTCAAAATATATATTATAAA
ACAAAAATGAATATTTAAATCAATCTGTACGATATCG
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