EY735517

Overview
NameEY735517
Unique NameEY735517
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length956
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735517 vs. ExPASy Swiss-Prot
Match: TDH_PYRFU (Probable L-threonine 3-dehydrogenase OS=Pyrococcus furiosus GN=tdh PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.615e-17
Identity = 45/121 (37.19%), Postives = 67/121 (55.37%), Query Frame = 1
Query:  103 LPTLGPQDVKVRIKALGICGNDVHHFKTMTCANFIVKKPMVIGHECAGIIKEVGSEVNSLEVGDRGALEAGINCGHCTLCKAGNYKLCPEMRFVGSPPTNGSLAHNVVHPAKLCYKLPDDV 465
            +P  GP +V ++I A  ICG D+H ++    A   ++ P ++GHE AG + EVG  V  +EVGD  ++E  I CG C  CK G Y +C   +  G   T+G  A   V PA+  +K P ++
Sbjct:   24 VPKPGPGEVLIKILATSICGTDLHIYEWNEWAQTRIRPPQIMGHEVAGEVVEVGPGVEGIEVGDYVSVETHIVCGKCYACKRGQYHVCQNTKIFG-VDTDGVFAEYAVVPAQNVWKNPKNI 143          
BLAST of EY735517 vs. ExPASy Swiss-Prot
Match: TDH_PROMH (L-threonine 3-dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=tdh PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.946e-17
Identity = 50/137 (36.50%), Postives = 68/137 (49.64%), Query Frame = 1
Query:   73 IKTLKIQP------YHLPTLGPQDVKVRIKALGICGNDVHHFKTMTCANFIVKKPMVIGHECAGIIKEVGSEVNSLEVGDRGALEAGINCGHCTLCKAGNYKLCPEMRFVGSPPTNGSLAHNVVHPAKLCYKLPDDV 465
            +  LK QP        +P LG  DV ++I+   ICG DVH +     +   +  PMV+GHE  G I  +G EV    +GDR + E  I CGHC  C+ G   LC     VG     G  A  +V PA   +K+PD++
Sbjct:    4 LSKLKAQPGIWMTDVPVPELGHNDVMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYIGEIVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVG-VNRPGCFAEYLVIPAFNAFKIPDNI 139          
BLAST of EY735517 vs. ExPASy Swiss-Prot
Match: TDH_ANASK (L-threonine 3-dehydrogenase OS=Anaeromyxobacter sp. (strain K) GN=tdh PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.946e-17
Identity = 46/121 (38.02%), Postives = 66/121 (54.55%), Query Frame = 1
Query:  103 LPTLGPQDVKVRIKALGICGNDVHHFKTMTCANFIVKKPMVIGHECAGIIKEVGSEVNSLEVGDRGALEAGINCGHCTLCKAGNYKLCPEMRFVGSPPTNGSLAHNVVHPAKLCYKLPDDV 465
            +P +G  DV +++    ICG DVH +     +   V  PMV+GHE  G +++VG+EV +   G+R + E  + CG C  C+AG   LC     VG     GS A  VV PA   Y++PDD+
Sbjct:   21 VPEVGVHDVMIKVTKSAICGTDVHIYNWDEWSQKTVPVPMVVGHEYVGRVEKVGAEVEAFRPGERVSGEGHVTCGFCRNCRAGRRHLCRHTVGVG-VNRPGSFAEYVVIPADNVYRIPDDI 140          
BLAST of EY735517 vs. ExPASy Swiss-Prot
Match: TDH_SHISS (L-threonine 3-dehydrogenase OS=Shigella sonnei (strain Ss046) GN=tdh PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.299e-16
Identity = 45/122 (36.89%), Postives = 65/122 (53.28%), Query Frame = 1
Query:  103 LPTLGPQDVKVRIKALGICGNDVHHFKTMTCANFIVKKPMVIGHECAGIIKEVGSEVNSLEVGDRGALEAGINCGHCTLCKAGNYKLCPEMRFVGSPPTNGSLAHNVVHPAKLCYKLPDDVS 468
            +P LG  D+ ++I+   ICG DVH +     +   +  PMV+GHE  G +  +G EV   ++GDR + E  I CGHC  C+ G   LC     VG     G  A  +V PA   +K+PD++S
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVG-VNRPGCFAEYLVIPAFNAFKIPDNIS 140          
BLAST of EY735517 vs. ExPASy Swiss-Prot
Match: TDH_SHIFL (L-threonine 3-dehydrogenase OS=Shigella flexneri GN=tdh PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.299e-16
Identity = 45/122 (36.89%), Postives = 65/122 (53.28%), Query Frame = 1
Query:  103 LPTLGPQDVKVRIKALGICGNDVHHFKTMTCANFIVKKPMVIGHECAGIIKEVGSEVNSLEVGDRGALEAGINCGHCTLCKAGNYKLCPEMRFVGSPPTNGSLAHNVVHPAKLCYKLPDDVS 468
            +P LG  D+ ++I+   ICG DVH +     +   +  PMV+GHE  G +  +G EV   ++GDR + E  I CGHC  C+ G   LC     VG     G  A  +V PA   +K+PD++S
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVG-VNRPGCFAEYLVIPAFNAFKIPDNIS 140          
BLAST of EY735517 vs. ExPASy Swiss-Prot
Match: TDH_SHIF8 (L-threonine 3-dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=tdh PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.299e-16
Identity = 45/122 (36.89%), Postives = 65/122 (53.28%), Query Frame = 1
Query:  103 LPTLGPQDVKVRIKALGICGNDVHHFKTMTCANFIVKKPMVIGHECAGIIKEVGSEVNSLEVGDRGALEAGINCGHCTLCKAGNYKLCPEMRFVGSPPTNGSLAHNVVHPAKLCYKLPDDVS 468
            +P LG  D+ ++I+   ICG DVH +     +   +  PMV+GHE  G +  +G EV   ++GDR + E  I CGHC  C+ G   LC     VG     G  A  +V PA   +K+PD++S
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVG-VNRPGCFAEYLVIPAFNAFKIPDNIS 140          
BLAST of EY735517 vs. ExPASy Swiss-Prot
Match: TDH_SHIBS (L-threonine 3-dehydrogenase OS=Shigella boydii serotype 4 (strain Sb227) GN=tdh PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.299e-16
Identity = 45/122 (36.89%), Postives = 65/122 (53.28%), Query Frame = 1
Query:  103 LPTLGPQDVKVRIKALGICGNDVHHFKTMTCANFIVKKPMVIGHECAGIIKEVGSEVNSLEVGDRGALEAGINCGHCTLCKAGNYKLCPEMRFVGSPPTNGSLAHNVVHPAKLCYKLPDDVS 468
            +P LG  D+ ++I+   ICG DVH +     +   +  PMV+GHE  G +  +G EV   ++GDR + E  I CGHC  C+ G   LC     VG     G  A  +V PA   +K+PD++S
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVG-VNRPGCFAEYLVIPAFNAFKIPDNIS 140          
BLAST of EY735517 vs. ExPASy Swiss-Prot
Match: TDH_SHIB3 (L-threonine 3-dehydrogenase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=tdh PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.299e-16
Identity = 45/122 (36.89%), Postives = 65/122 (53.28%), Query Frame = 1
Query:  103 LPTLGPQDVKVRIKALGICGNDVHHFKTMTCANFIVKKPMVIGHECAGIIKEVGSEVNSLEVGDRGALEAGINCGHCTLCKAGNYKLCPEMRFVGSPPTNGSLAHNVVHPAKLCYKLPDDVS 468
            +P LG  D+ ++I+   ICG DVH +     +   +  PMV+GHE  G +  +G EV   ++GDR + E  I CGHC  C+ G   LC     VG     G  A  +V PA   +K+PD++S
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVG-VNRPGCFAEYLVIPAFNAFKIPDNIS 140          
BLAST of EY735517 vs. ExPASy Swiss-Prot
Match: TDH_SHEFN (L-threonine 3-dehydrogenase OS=Shewanella frigidimarina (strain NCIMB 400) GN=tdh PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.299e-16
Identity = 44/120 (36.67%), Postives = 64/120 (53.33%), Query Frame = 1
Query:  106 PTLGPQDVKVRIKALGICGNDVHHFKTMTCANFIVKKPMVIGHECAGIIKEVGSEVNSLEVGDRGALEAGINCGHCTLCKAGNYKLCPEMRFVGSPPTNGSLAHNVVHPAKLCYKLPDDV 465
            P +G  D+ ++I+   ICG DVH +     +   +  PM+ GHE  G + +VG EV    +GDR + E  I CGHC  C+AG   LC     VG    +G+ A  +V PA   +K+P D+
Sbjct:   21 PEMGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMIAGHEYVGEVVDVGQEVRGFSIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVG-VNRDGAFAEYLVLPAFNAFKIPADI 139          
BLAST of EY735517 vs. ExPASy Swiss-Prot
Match: TDH_KLEP7 (L-threonine 3-dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=tdh PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.299e-16
Identity = 45/121 (37.19%), Postives = 65/121 (53.72%), Query Frame = 1
Query:  106 PTLGPQDVKVRIKALGICGNDVHHFKTMTCANFIVKKPMVIGHECAGIIKEVGSEVNSLEVGDRGALEAGINCGHCTLCKAGNYKLCPEMRFVGSPPTNGSLAHNVVHPAKLCYKLPDDVS 468
            P +G  D+ ++I+   ICG DVH +     +   +  PMV+GHE  G +  +G EV   ++GDR + E  I CGHC  C+AG   LC     VG     G  A  +V PA   +K+PD++S
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTIGVG-VNRPGCFAEYLVIPAFNAFKIPDNIS 140          
The following BLAST results are available for this feature:
BLAST of EY735517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
TDH_PYRFU7.615e-1737.19Probable L-threonine 3-dehydrogenase OS=Pyrococcus... [more]
TDH_PROMH9.946e-1736.50L-threonine 3-dehydrogenase OS=Proteus mirabilis (... [more]
TDH_ANASK9.946e-1738.02L-threonine 3-dehydrogenase OS=Anaeromyxobacter sp... [more]
TDH_SHISS1.299e-1636.89L-threonine 3-dehydrogenase OS=Shigella sonnei (st... [more]
TDH_SHIFL1.299e-1636.89L-threonine 3-dehydrogenase OS=Shigella flexneri G... [more]
TDH_SHIF81.299e-1636.89L-threonine 3-dehydrogenase OS=Shigella flexneri s... [more]
TDH_SHIBS1.299e-1636.89L-threonine 3-dehydrogenase OS=Shigella boydii ser... [more]
TDH_SHIB31.299e-1636.89L-threonine 3-dehydrogenase OS=Shigella boydii ser... [more]
TDH_SHEFN1.299e-1636.67L-threonine 3-dehydrogenase OS=Shewanella frigidim... [more]
TDH_KLEP71.299e-1637.19L-threonine 3-dehydrogenase OS=Klebsiella pneumoni... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-090-E04-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735517 ID=EY735517; Name=EY735517; organism=Citrus sinensis; type=EST; length=956bp
ATTGAAATGGCTGAAGCAATCCCATATGACGAACGAGACAAGAATCAGAA
CATGGCTGCTTGGCTGCTTGGAATCAAAACTCTGAAAATTCAGCCATATC
ATTTGCCTACCCTAGGTCCTCAAGATGTGAAAGTACGAATTAAGGCTCTT
GGAATATGTGGAAATGATGTTCATCACTTCAAGACTATGACATGTGCCAA
TTTTATTGTGAAAAAACCTATGGTAATTGGACATGAATGTGCTGGGATCA
TAAAAGAAGTTGGCAGTGAAGTTAACTCCCTTGAGGTGGGTGATCGTGGG
GCTCTAGAAGCTGGTATTAATTGCGGACACTGCACTCTCTGCAAAGCTGG
TAACTATAAACTTTGCCCTGAAATGAGATTCGTTGGATCTCCTCCAACCA
ACGGCTCTCTTGCCCATAATGTTGTGCATCCAGCGAAGTTATGTTACAAG
TTACCTGACGATGTGAGCTTTGGAAAGAAGAGCAATGTGTGAGCCCTTAA
GTGCTGGTGTCCTTGCCCTGTCGCCCAGCAAATGCTTCGAACCTGAAAAC
AATTGTATTGATCATGGGATCACGGACCGAGAGGCCTTGGGTAACCTGTT
AGCTGGTCAAGAATTTGGGGGCCCCCAAAATTATCATCAAAGGATGATGG
AATGGTCATCGCCCTTTCTTTTGGCAAGTGAATTTGGATGTGGTAGGATA
CAAAAAATAGTCCTTCAACTATTCTTGGGGATGGTAGAAACAAAAGATGG
GGCAAGAATAATAAAAAAACTATGGGGATACGGGGCTTTAATTTGGATGC
TTTTTATATAGTGATGGGAGTTATAAAAAAATCAATAGTATATACAATAA
ATTAGAAGACAATTCTATATTAAGAGAAAATAAATATTGTATAATTAGAG
AATATATAGAAGAGAGGGATAAATAGAAGAGATAAAAAAACAATAACACA
CAACGT
back to top