EY735508

Overview
NameEY735508
Unique NameEY735508
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1050
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735508 vs. ExPASy Swiss-Prot
Match: IMA3_HUMAN (Importin subunit alpha-3 OS=Homo sapiens GN=KPNA3 PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 1.439e-27
Identity = 83/233 (35.62%), Postives = 125/233 (53.65%), Query Frame = 1
Query:   19 SRVDPASAEDTKVVIDHGAVPIFVKLLASPRDNIREKAASALGNVAIDSPRFRDLVLSEEALIPLLTLLNNHANLSMKRRATRTLSNLC-SGNPRPIFEQVRPALPALAQLVHSNDEQVLTDACRALFFLSSDRKNDKIQAVIEAGVCPRLVELLGHPSPSVLTAALQTVYKYCEGR*IPDSVYN*LWCTAVPFGAVESMDHEIRIKKFACWIIGNIPAGETRKKIPAGIDAG 714
            + +   ++  T+ V+   AVP+F++LL SP  N+ E+A  ALGN+  D P+ RD V+S   + PLL+ ++    ++  R  T  + NLC + +P P  E V+  LPAL  L++  D  +L D   AL +L +D  N++IQ VI++GV P LV LL H    V TAAL+ V     G      V   L C  +          + +I K A W + NI AG  ++++ A IDAG
Sbjct:  140 TNIASGTSAQTQAVVQSNAVPLFLRLLRSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPLLSFISPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPALCVLIYHTDINILVDTVWALSYL-TDGGNEQIQMVIDSGVVPFLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVV--LNCDVLSHFPNLLSHPKEKINKEAVWFLSNITAG-NQQQVQAVIDAG 368          
BLAST of EY735508 vs. ExPASy Swiss-Prot
Match: IMA8_HUMAN (Importin subunit alpha-8 OS=Homo sapiens GN=KPNA7 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.032e-25
Identity = 78/225 (34.67%), Postives = 121/225 (53.78%), Query Frame = 1
Query:   19 SRVDPASAEDTKVVIDHGAVPIFVKLLASPRDNIREKAASALGNVAIDSPRFRDLVLSEEALIPLLTLLNNHANLSMKRRATRTLSNLC-SGNPRPIFEQVRPALPALAQLVHSNDEQVLTDACRALFFLSSDRKNDKIQAVIEAGVCPRLVELLGHPSPSVLTAALQTVYKYCEGR*IPDSVYN*LWCTAVPFGAVESMDHEIR-----IKKFACWIIGNIPAG 675
            + +   ++E T+ V++ GA+   ++LL+S    + E+A  ALGN+A D P FRD V++  A+  LL L++    ++  R  T TLSNLC + NP P    V+  LPAL  L+   D +VL+DAC AL +L +D  N +I  V+  GV PRLV L+     +VLT +L+TV     G      +       A+  G +  +   ++     I+K A W + N+ AG
Sbjct:  139 TNIASGTSEQTRAVVEGGAIQPLIELLSSSNVAVCEQAVWALGNIAGDGPEFRDNVITSNAIPHLLALISPTLPITFLRNITWTLSNLCRNKNPYPCDTAVKQILPALLHLLQHQDSEVLSDACWALSYL-TDGSNKRIGQVVNTGVLPRLVVLMTSSELNVLTPSLRTVGNIVTGTDEQTQM-------AIDAGMLNVLPQLLQHNKPSIQKEAAWALSNVAAG 355          
BLAST of EY735508 vs. ExPASy Swiss-Prot
Match: IMA3_CAEEL (Importin subunit alpha-3 OS=Caenorhabditis elegans GN=ima-3 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 1.347e-25
Identity = 83/233 (35.62%), Postives = 119/233 (51.07%), Query Frame = 1
Query:   19 SRVDPASAEDTKVVIDHGAVPIFVKLLASPRDNIREKAASALGNVAIDSPRFRDLVLSEEALIPLLTLLNNHANLSMKRRATRTLSNLC-SGNPRPIFEQVRPALPALAQLVHSNDEQVLTDACRALFFLSSDRKNDKIQAVIEAGVCPRLVELLGHPSPSVLTAALQTVYKYCEGR*IPDSVYN*LWCTAVPFGAVESMDHEIRIKKFACWIIGNIPAGETRKKIPAGIDAG 714
            + +   ++E T+ V++ GAVP+F++LL+    N+ E++  ALGN+  D P FRD  L    L PLL  +N    +   R  T  + NLC   +P P    VR  LPAL+ L+H  D  +L D   AL +L +D  N+ IQ VIEA V   LV LLGH    V TAAL+ V     G    +     L    + F       ++ +I K A W + NI AG  ++++    DAG
Sbjct:  133 TNIASGTSEQTQAVVNAGAVPLFLQLLSCGNLNVCEQSVWALGNIIGDGPHFRDYCLELGILQPLLQFINPEIPIGFLRNVTWVIVNLCRCKDPAPSPAVVRTILPALSLLIHHQDTNILIDTVWALSYL-TDGGNEHIQMVIEAQVVTHLVPLLGHVDVKVQTAALRAVGNIVTG--TDEQTQLVLDSGVLRFMPGLLAHYKEKINKEAVWFVSNITAG-NQQQVQDVFDAG 361          
BLAST of EY735508 vs. ExPASy Swiss-Prot
Match: IMA1A_DICDI (Probable importin subunit alpha-A OS=Dictyostelium discoideum GN=DDB_G0273149 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 6.686e-25
Identity = 82/231 (35.50%), Postives = 121/231 (52.38%), Query Frame = 1
Query:   49 TKVVIDHGAVPIFVKLL-ASPRDNIREKAASALGNVAIDSPRFRDLVL---SEEALIPLL----------TLLNNHANLSMKRRATRTLSNLCSGNPRPIFEQVRPALPALAQLVHSND--EQVLTDACRALFFLSSDRKNDKIQAVIEAGVCPRLVELLGHPSPSVLTAALQTVYKYCEGR*IPDSVYN*LWCTAVPFGAVESMDHEI-----RIKKFACWIIGNIPAGE 678
            T+ V++ G+VPIF++LL A   D ++E+ A ALGN+A D+   R+ +L   +  ALIPLL          T  N+   + + +    T+SNLC G P+P F  V   LPA+ +L+   +   ++  D C AL +L  D  N KIQAVI++GV PRLV+LL +P   V T AL+ V     G      +        +    VE +   +      I+K +CW + NI AGE
Sbjct:  161 TQTVMESGSVPIFIQLLCAETTDEVKEQCAWALGNIAGDTVDSRNYLLKYGAMNALIPLLHYGEDNGATTTSANSERKIGLIQNVVWTISNLCRGKPQPDFSVVSQCLPAINELIRIENLPSEIYGDLCWALSYLC-DGPNTKIQAVIDSGVVPRLVKLLEYPDSIVFTPALRAVGNIVTGESSQTQI-------VIDNNGVELITRLLAVQKKSIRKESCWALSNITAGE 383          
BLAST of EY735508 vs. ExPASy Swiss-Prot
Match: IMA2_CAEEL (Importin subunit alpha-2 OS=Caenorhabditis elegans GN=ima-2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.308e-12
Identity = 68/234 (29.06%), Postives = 107/234 (45.73%), Query Frame = 1
Query:   37 SAEDTKVVIDHGAVPIFVKLLASPRDNIREKAASALGNVAIDSPRFRDLVLSEEALIPLLTLLNNHANL--SMKRRATRTLSNLCSG-NPRPIFEQVRPALPALAQLVHSNDEQVLTDACRALFFLSSDRKNDKIQAVIEAGVCPRLVELLGHPSPSVLTAALQTVYKYCEGR*IPDSVYN*LWCTAVPFGAVESM------DHEIRIKKFACWIIGNIPAGETRKKIPAGIDA 711
            S E T   ++ G     + L       I E+A  A+ N+A DS + RD V+    +  L+ L+     L  S  R      SN+C   NP    E +R     L +LV   D QV  DAC A+ +L +D  +++I+   E+GV P +V      + +++  AL+T+     G    DS    L    +  G+++ +           I K  CW++ NI AG T+K+I A +DA
Sbjct:  163 STEQTIAAVEAGVTIPLIHLSVHQSAQISEQALWAVANIAGDSSQLRDYVIKCHGVEALMHLMEKVDQLGDSHVRTIAWAFSNMCRHKNPHAPLEVLRVLSKGLVKLVQHTDRQVRQDACWAVSYL-TDGPDEQIELARESGVLPHVVAFF-KEAENLVAPALRTLGNVATGN---DS----LTQAVIDLGSLDEILPLMEKTRSSSIVKECCWLVSNIIAG-TQKQIQAVLDA 386          
The following BLAST results are available for this feature:
BLAST of EY735508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
IMA3_HUMAN1.439e-2735.62Importin subunit alpha-3 OS=Homo sapiens GN=KPNA3 ... [more]
IMA8_HUMAN1.032e-2534.67Importin subunit alpha-8 OS=Homo sapiens GN=KPNA7 ... [more]
IMA3_CAEEL1.347e-2535.62Importin subunit alpha-3 OS=Caenorhabditis elegans... [more]
IMA1A_DICDI6.686e-2535.50Probable importin subunit alpha-A OS=Dictyostelium... [more]
IMA2_CAEEL1.308e-1229.06Importin subunit alpha-2 OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-090-C10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735508 ID=EY735508; Name=EY735508; organism=Citrus sinensis; type=EST; length=1050bp
ACCGCCGACGCGTCGGATTCCCGGGTCGACCCCGCGTCCGCGGAGGACAC
TAAGGTGGTGATTGACCACGGTGCTGTTCCAATATTTGTGAAACTACTTG
CTTCTCCAAGAGATAATATCCGGGAGAAGGCTGCTTCGGCATTGGGAAAT
GTTGCTATTGACTCGCCTAGATTCCGTGATCTTGTGCTTAGTGAAGAAGC
TCTAATTCCATTGTTAACACTGTTAAATAACCATGCAAACCTTTCAATGA
AGAGAAGAGCCACACGGACGTTGTCTAATTTATGCAGCGGCAATCCACGA
CCAATATTTGAACAGGTGAGACCAGCTCTTCCGGCGCTTGCGCAGCTTGT
TCATTCAAATGATGAACAGGTCTTGACTGATGCTTGCCGGGCACTCTTCT
TTCTTTCTAGTGATCGTAAGAATGACAAAATTCAAGCTGTGATTGAGGCA
GGTGTCTGTCCACGACTTGTTGAGCTCCTTGGTCATCCATCACCCTCAGT
GCTTACTGCTGCCCTGCAGACTGTTTACAAATATTGTGAGGGGAGATGAA
TTCCAGACTCAGTGTATAATTAACTGTGGTGCACTGCCGTACCTTTTGGG
GCTGTTGAATCCATGGATCATGAAATTCGCATTAAGAAATTTGCATGCTG
GATTATTGGCAATATTCCAGCTGGGGAAACAAGGAAAAAAATTCCGGCGG
GAATTGATGCTGGCTTTTATTGGGCCCCCTTTGCAACCTGCTTCCAAAAT
GTTAAATTTTGATATAAAGGGATGGGGCCCCCAGGGGCCATTTTCAAACG
GCCCCCAGGGTTGAACACTCCTGAACCAAATTCGGTTATCTCCTGGGAAA
AAGGGGGGGGGAAAAAAACCATGTGGGGGGATCCCTTTTTTTTGGGGCTC
AATTCCAAAAAAATCGCCTCGGGTTTTGGCTTAAAAGAGGGGTTTAAAAA
AAAATTTTTTTGAAGAGGGCGGGGGGGAAAGCGCATTGAAAAAAAAAAAA
ATTTGGGCAACCCCCCTCACCCTTATGGGTGAAAAAGATTGTTTTTGCAC
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