EY735479

Overview
NameEY735479
Unique NameEY735479
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length993
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735479 vs. ExPASy Swiss-Prot
Match: EPA2A_XENLA (Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis GN=epabp2-A PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.259e-19
Identity = 42/79 (53.16%), Postives = 60/79 (75.95%), Query Frame = 2
Query:  263 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALPLNESELHGRQLKV 496
            K+E D RSV+VGNVDY  T ++++ HF SCG++NR+TIL DKF G PKG+AY+EF E ++V  A+ ++E+   GR +KV
Sbjct:   87 KKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVTMDETVFRGRTIKV 165          

HSP 2 Score: 25.0238 bits (53), Expect = 1.259e-19
Identity = 15/47 (31.91%), Postives = 19/47 (40.43%), Query Frame = 3
Query:  492 RFLPKRDNVPGMKPVSSKAFQSLTWGTEGGGPYVPPYFLFPFRDMGR 632
            + LPKR N+PG+       F+    G  G           PFR  GR
Sbjct:  164 KVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRPRGRPFRGCGR 210          
BLAST of EY735479 vs. ExPASy Swiss-Prot
Match: PABP2_DICDI (Polyadenylate-binding protein 2 OS=Dictyostelium discoideum GN=pabpn1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.870e-19
Identity = 54/109 (49.54%), Postives = 73/109 (66.97%), Query Frame = 2
Query:  263 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALPLNESELHGRQLKVFT*EGQCPWYETSIVQGVSIPYL-GYRGRR 583
            +EE DSRSV+VGNVDY  T +++  +FQSCGTVNR+TIL+DK  G PKG  YVEF+  +++  A+ LN+S  + RQLK+       P+Y   + QGV  P   G+RG R
Sbjct:   95 QEEIDSRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESIINAMALNDSFFNERQLKITPKRTNLPYY---MRQGVLPPGRGGFRGGR 200          
BLAST of EY735479 vs. ExPASy Swiss-Prot
Match: EPAB2_HUMAN (Embryonic polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPNL1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.245e-17
Identity = 58/147 (39.46%), Postives = 78/147 (53.06%), Query Frame = 2
Query:  194 QAKVEKEMGAAQ----DPANV----AANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALPLNESELHGRQLKVFT*EGQCPWYETSI---------VQGVSIPYLGYRGR 580
            Q + E+E G A      P  V    +     K EAD RSV+VGNVDY  + EE++ HF  CG V+RVTIL DKF G PKG+AY+EF    +VQ A+ L++S   GR +KV       P   ++           +G   P+ G +GR
Sbjct:  110 QQQAEEEEGTAAGQLLSPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRGAPFPHSGLQGR 256          
BLAST of EY735479 vs. ExPASy Swiss-Prot
Match: EPAB2_RAT (Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus GN=Pabpnl1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.231e-16
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 2
Query:  269 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALPLNESELHGRQLKV 496
            EAD RSV+VGNVDY  +  E++ +F  CG ++RVTIL DKF G PKG+AY+EF    +VQ A+ L+ES   GR +KV
Sbjct:  135 EADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQAAVRLDESTFRGRVIKV 211          
BLAST of EY735479 vs. ExPASy Swiss-Prot
Match: EPAB2_MOUSE (Embryonic polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpnl1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.231e-16
Identity = 45/85 (52.94%), Postives = 60/85 (70.59%), Query Frame = 2
Query:  251 NQASKE--EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALPLNESELHGRQLKV 496
            ++ SKE  EAD RSVFVGNVDY  +  E++ +F  CG ++RVTIL DKF G PKG+AY+EF    +V+ A+ L+ES   GR +KV
Sbjct:  131 SRTSKENVEADHRSVFVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASHRSVKAAVGLDESTFRGRVIKV 215          
BLAST of EY735479 vs. ExPASy Swiss-Prot
Match: SGN1_YEAST (RNA-binding protein SGN1 OS=Saccharomyces cerevisiae GN=SGN1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.351e-14
Identity = 37/81 (45.68%), Postives = 55/81 (67.90%), Query Frame = 2
Query:  257 ASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALPLNESELHGRQLKV 496
            A + EADSRS+FVGN+    TPE+++ HF+ CG + R+T+L D+  G PKG+ Y+EF      ++AL LN  EL G+++ V
Sbjct:   56 AHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLNGGELKGKKIAV 136          
BLAST of EY735479 vs. ExPASy Swiss-Prot
Match: YQOC_CAEEL (Putative RNA-binding protein EEED8.12 OS=Caenorhabditis elegans GN=EEED8.12 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.509e-12
Identity = 40/102 (39.22%), Postives = 62/102 (60.78%), Query Frame = 2
Query:  194 QAKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALPLNESELHGRQLKV 496
            Q K+ K + +A   A V   +  ++  D++SVF+GNVD+  T EEV++HF+ CG + R TI  DKF  + K FAY+EF +  +++ AL +N S    R + V
Sbjct:   35 QNKMAKNLESA---AYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVV 133          
BLAST of EY735479 vs. ExPASy Swiss-Prot
Match: YQO4_CAEEL (Putative RNA-binding protein EEED8.4 OS=Caenorhabditis elegans GN=EEED8.4 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 7.817e-12
Identity = 38/102 (37.25%), Postives = 62/102 (60.78%), Query Frame = 2
Query:  194 QAKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALPLNESELHGRQLKV 496
            Q K+ K + +A   A V   +  ++  D++SVF+GNVD+  T EE+++HF+ CG + + TI  DKF  + K FAY+EF +  +++ AL +N S    R + V
Sbjct:   29 QNKMAKHLESA---AYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVV 127          
BLAST of EY735479 vs. ExPASy Swiss-Prot
Match: RBM34_HUMAN (RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.970e-11
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 2
Query:  275 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALPLNESELHGRQLKV 496
            D RSVFVGN+ Y      +++HF  CG++  V I+ DK  G  KGF YV F   D+V  AL LN SEL GR+L+V
Sbjct:  285 DKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRV 359          
The following BLAST results are available for this feature:
BLAST of EY735479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
EPA2A_XENLA1.259e-1953.16Embryonic polyadenylate-binding protein 2-A OS=Xen... [more]
PABP2_DICDI3.870e-1949.54Polyadenylate-binding protein 2 OS=Dictyostelium d... [more]
EPAB2_HUMAN1.245e-1739.46Embryonic polyadenylate-binding protein 2 OS=Homo ... [more]
EPAB2_RAT5.231e-1654.55Embryonic polyadenylate-binding protein 2 OS=Rattu... [more]
EPAB2_MOUSE5.231e-1652.94Embryonic polyadenylate-binding protein 2 OS=Mus m... [more]
SGN1_YEAST8.351e-1445.68RNA-binding protein SGN1 OS=Saccharomyces cerevisi... [more]
YQOC_CAEEL3.509e-1239.22Putative RNA-binding protein EEED8.12 OS=Caenorhab... [more]
YQO4_CAEEL7.817e-1237.25Putative RNA-binding protein EEED8.4 OS=Caenorhabd... [more]
RBM34_HUMAN2.970e-1149.33RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-109-G10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735479 ID=EY735479; Name=EY735479; organism=Citrus sinensis; type=EST; length=993bp
CAGAAGAGAGAGAATGGAGGACCAATAGCACGAGGTTTACGGAGGCGAAA
TCCCTGACGTGGAAGGTGACATGGACGCTCACAATACTGACGTCGACATG
TCGGCGGCCGATGACGACGCCGTCAAGGAGCTGGATGAGATGAAGAAGCG
GTTGAAGGAGATGGAGGAGGAAGCTGCTGCTCTTCGTGAGATGCAAGCTA
AGGTCGAGAAAGAGATGGGCGCTGCTCAAGATCCTGCTAATGTGGCTGCT
AATCAAGCAAGCAAAGAAGAGGCAGATTCACGATCAGTCTTTGTTGGCAA
TGTAGATTATGCATGCACTCCTGAAGAAGTGCAGCAACATTTCCAATCCT
GTGGTACTGTAAACAGGGTAACTATTCTGACAGACAAGTTTGGCCAGCCA
AAGGGTTTTGCTTATGTGGAATTCCTTGAAATAGATGCTGTTCAAGAGGC
TCTCCCGTTGAATGAGTCTGAATTACATGGCCGTCAACTGAAGGTTTTTA
CCTAAGAGGGACAATGTCCCTGGTATGAAACCAGTATCGTCCAAGGCGTT
TCAATCCCTTACTTGGGGTACCGAGGGCGGAGGCCCCTATGTACCTCCTT
ATTTTCTATTTCCCTTTAGGGATATGGGAAGGTTCCAAGGTTAGAAAGGG
CAATGGAGGTACTGGCCCTACTAATACCAAAATTGTGCTCCTGGTGAGAA
AAGGGGGAACTTTTGGGGGATATCCCTAAAATGGAAAAATTTCAAGGGTA
CATGGGGGGCTTTATGTTTTCCCGGGTTTAAAAAAGGAAAAACAAGGATT
TTTTTAACCTACCTGTGTTTTTATTATTTGGTGGTTCTTGTATGGGTATT
CAACATTTTTTTTAACTGGGAGAATTTTTTAGGGGAATTTTTTTTTGGGT
TGAGAATTTTGGGGGTGGAGGGGGGAAAACTTTATCCCACAATTATTTGG
GGCGAGTAGGGGGCGAAGAAAACAAAAAGCGGGGGGGGTTAAG
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