EY735442

Overview
NameEY735442
Unique NameEY735442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1022
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735442 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 5.246e-19
Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 2
Query:   44 GHSYFNLVLITPVGGAGDVHSVSIKGSK--TGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 268
            G  YF LVL+T V  AG V S+ ++GS+   GW AMSRNWG NWQS +YL+GQ LSF++TA+DG+T+    VVP +W
Sbjct:  174 GRDYFELVLVTNVAAAGSVRSMEVRGSRRGAGWMAMSRNWGANWQSLAYLDGQGLSFRVTATDGQTIVFAGVVPPSW 250          
BLAST of EY735442 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.526e-18
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = 2
Query:   41 NGHSYFNLVLITPVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 268
            +G   F  VLIT V G+GD+ +V IKGS+TGW  M RNWGQNW  N+ L  Q+LSF++T+SD  TVTS NV P NW
Sbjct:  177 DGGGIFISVLITNVAGSGDIAAVKIKGSRTGWLPMGRNWGQNWHINADLRNQALSFEVTSSDRSTVTSYNVSPKNW 252          
BLAST of EY735442 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 4.441e-18
Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = 2
Query:   44 GHSYFNLVLITPVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 268
            G+ YF +VLI  VGGAGD+  V +KG+KTGW  M +NWGQNW + + L GQ LSF++T SDG T    NV+P NW
Sbjct:  187 GNPYFLMVLIYNVGGAGDIKYVQVKGNKTGWITMKKNWGQNWTTITVLTGQGLSFRVTTSDGITKDFWNVMPKNW 261          
BLAST of EY735442 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 4.441e-18
Identity = 42/77 (54.55%), Postives = 51/77 (66.23%), Query Frame = 2
Query:   41 NGHSYFNLVLITPVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 268
            NGH YFNLVL+T V   G + S+ I GS  T W  M RNWG NW S SYL GQ+LSF++T  DG+T+   N+VP  W
Sbjct:  173 NGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQTLSFRVTNMDGQTLVFKNIVPSGW 249          
BLAST of EY735442 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 7.575e-18
Identity = 42/77 (54.55%), Postives = 50/77 (64.94%), Query Frame = 2
Query:   41 NGHSYFNLVLITPVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 268
            NGH YFNLVL+T V   G + S+ I GS  T W  M RNWG NW S SYL GQ LSF++T  DG+T+   N+VP  W
Sbjct:  189 NGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGW 265          
BLAST of EY735442 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 9.893e-18
Identity = 39/75 (52.00%), Postives = 51/75 (68.00%), Query Frame = 2
Query:   44 GHSYFNLVLITPVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 268
            G+ YF ++L   VGGAGD+  + +KG KTGW  M +NWGQNW +   L GQ +SF++T SDG T   NNV+P NW
Sbjct:  190 GNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNW 264          
BLAST of EY735442 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 9.893e-18
Identity = 39/75 (52.00%), Postives = 51/75 (68.00%), Query Frame = 2
Query:   44 GHSYFNLVLITPVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 268
            G+ YF ++L   VGGAGD+  + +KG KTGW  M +NWGQNW +   L GQ +SF++T SDG T   NNV+P NW
Sbjct:  183 GNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNW 257          
BLAST of EY735442 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 2.204e-17
Identity = 39/75 (52.00%), Postives = 55/75 (73.33%), Query Frame = 2
Query:   44 GHSYFNLVLITPVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 268
            G +YF LVL+T + G+G + S+S+KGS TGW  MSRNWG NWQ  + L GQ+LSF +T++ G+T+  ++VVP  W
Sbjct:  161 GLNYFELVLVTNMAGSGSIASMSVKGSSTGWIQMSRNWGANWQCLAGLAGQALSFTVTSTGGQTIVFDSVVPAGW 235          
BLAST of EY735442 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.879e-17
Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 2
Query:   44 GHSYFNLVLITPVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 268
            G+ YF +VLI  VGGAGD+  V +K +KTGW  M +NWGQNW +++ L GQ LSF++T +DG T    NV+P NW
Sbjct:  193 GNPYFLMVLIYNVGGAGDIKYVQVKENKTGWITMKKNWGQNWTTSTVLTGQGLSFRVTTTDGITKDFWNVMPKNW 267          
BLAST of EY735442 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.879e-17
Identity = 40/75 (53.33%), Postives = 54/75 (72.00%), Query Frame = 2
Query:   44 GHSYFNLVLITPVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 268
            G ++F LVL++ V G+G V SVS+KG  TGW  ++RNWG NWQ NS L GQ+LSF +T++ G+T+   NVVP  W
Sbjct:  167 GFNFFELVLVSNVAGSGSVRSVSVKGGSTGWITLNRNWGANWQCNSGLVGQALSFAVTSTGGQTLYIYNVVPSWW 241          
The following BLAST results are available for this feature:
BLAST of EY735442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
EXP29_ORYSJ5.246e-1955.84Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ARATH1.526e-1857.89Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP22_ARATH4.441e-1856.00Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP14_ORYSJ4.441e-1854.55Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ORYSJ7.575e-1854.55Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP25_ARATH9.893e-1852.00Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP23_ARATH9.893e-1852.00Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXP18_ORYSJ2.204e-1752.00Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ARATH2.879e-1753.33Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP25_ORYSJ2.879e-1753.33Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-109-B01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735442 ID=EY735442; Name=EY735442; organism=Citrus sinensis; type=EST; length=1022bp
CCACGCGTCCGGAAGAAAGGAGGAATAAGGTTCCCCTTTTAATGGACACT
CATACTTCAACCTGGTTTTGATCACACCTGTCGGAGGAGCAGGAGATGTA
CATTCAGTATCAATCAAGGGTTCAAAGACTGGATGGCAAGCAATGTCAAG
GAACTGGGGCCAAAATTGGCAGAGCAATTCTTATCTTAACGGCCAAAGTC
TTTCTTTCCAATTGACAGCCAGTGACGGCAGGACTGTGACTAGCAACAAT
GTTGTGCCTGGAAATTGGCAATTTGGGCAAACCTTTGAGGGTGGTCAGTT
TTAGATTTTAAAAAAGTGAATCAGAATTTGTATATTTAATTGAATTTGGC
ACTGTTTGTGAGGGAGGAAGGGTGAGAATAGGGGTAGGTGAGGCTCAGGC
CTGGCCGATGTGGCCTGTCTTGTTGCTGTGGTGGTCTGTTGGCACCCGCT
AGGCCTCTATAAATAGAAATGATTGTGTTCTAAATATAGTTATTACTTCA
ATTGAATGAACGGGTATAAATTTCATTTCTATCAAATATATATACAAAAA
ATATAACTACTTCAACTATTATATAAAAATAAAATTTAAAAGGGAAATGG
GGCGGCCCCTCAAAAAGAACCAAACTTAAATATACGCGGGCTGGCAAACT
CAAAGCCCTTTCAAAAGGGGCACCCAAAATTAATTCCCGTGGGCCGCCTT
TTAAAAACGCCCGGACCGGGGAAAAACCCGGGGGTTACCCCATAATAATC
CCCTTCGCACCCCATCCCCCTTTTCCCCCACTTGGGATAAAATCAGGAAA
AGAGCCCCCCCCATTCCCCCCTTTTCCAAATTTTTCCCACCCCCTTAAAG
GGGAAAAGGGAACCCACCCCTGTATCCGCCCCCCAATATTACCGCGGAGG
GGGGGTGGGGGGGTTAACCCCCCGGAGAGGGCACCCCCACACATTTTGGG
CGAGCCCCTCCACCCCCCCCCCCCTCCTATTTTAATTCTTTTTTTTCTCT
TCTTTTTTTTTTTTTCACTCCA
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