EY735442

Overview
NameEY735442
Unique NameEY735442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1022
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735442 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 6.002e-15
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 2
Query:   59 NLVLITP--VGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 268
            N++ I P  VGGAGD+ +VS KGSKT W  MSR WGQNW +N  L GQS+S ++T SDG T    +V+P +W
Sbjct:  179 NILTILPYNVGGAGDIIAVSAKGSKTAWVVMSRYWGQNWTTNVNLTGQSVSLRVTTSDGITKDFTDVMPASW 250          
BLAST of EY735442 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.337e-14
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 2
Query:   44 GHSYFNLVLITPVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 268
            G  +F LVL+  V G+G V +VS++G+ TGW  MSRNWG NWQS + L GQ LSF +T + G+ +   +V P  W
Sbjct:  167 GFDHFELVLVANVAGSGSVAAVSVRGAGTGWLQMSRNWGANWQSLAGLAGQPLSFGVTTTGGQYILFQDVAPAGW 241          
BLAST of EY735442 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.746e-14
Identity = 36/75 (48.00%), Postives = 52/75 (69.33%), Query Frame = 2
Query:   44 GHSYFNLVLITPVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 268
            G +YF LVLI+ V G+G + SV +KG  T    +SRNWG NWQS++ L GQ+L+F +T++ G+T+   N+VP  W
Sbjct:  172 GFNYFELVLISNVAGSGSIQSVWVKGPNTDRMPLSRNWGANWQSHAGLVGQTLTFGVTSTGGQTLVFQNIVPAWW 246          
BLAST of EY735442 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.890e-14
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 2
Query:   41 NGHSYFNLVLITPVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 268
            +G S+F  VLI+ VG  G+V  V +KG  T W  M+RNWGQNW S+  L GQSLSF++T   G+T+ S +V P  W
Sbjct:  168 SGSSHFFQVLISNVGLDGEVVGVKVKGHTTAWIPMARNWGQNWHSSLDLIGQSLSFEVTLKGGKTIASYDVAPPYW 243          
BLAST of EY735442 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.081e-14
Identity = 37/78 (47.44%), Postives = 54/78 (69.23%), Query Frame = 2
Query:   38 FNGHSYFNLVLITPVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGR-TVTSNNVVPGNW 268
            F G+ Y+ LV +  VGG GD+ ++++KGS+TGW  MS NWG ++Q+ S L GQSLSF+LT+   R T+ + N  P +W
Sbjct:  167 FEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASW 244          
BLAST of EY735442 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.252e-12
Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = 2
Query:   44 GHSYFNLVLITPVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 268
            G+ +F ++L   VGGAG V ++ IKG++T W AM +NWGQ W +   L GQ LSF+LT SDG      +V P +W
Sbjct:  225 GNPHFLMILPYNVGGAGAVRAMQIKGTRTQWIAMKKNWGQIWSTGVVLTGQCLSFRLTTSDGVMKEFIDVTPPDW 299          
BLAST of EY735442 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.384e-11
Identity = 31/76 (40.79%), Postives = 50/76 (65.79%), Query Frame = 2
Query:   44 GHSYFNLVLITPVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 268
            G+  +N+V++  VGGAGDV  +++KG+K   W  + R+WGQ W++ + L G+SL+F++   D R  TS  V P +W
Sbjct:  203 GNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDW 278          
The following BLAST results are available for this feature:
BLAST of EY735442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
EXP21_ARATH6.002e-1554.17Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP27_ORYSJ1.337e-1448.00Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXP15_ORYSJ1.746e-1448.00Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ARATH3.890e-1450.00Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP18_ARATH5.081e-1447.44Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP24_ARATH1.252e-1246.67Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP26_ORYSJ1.384e-1140.79Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-109-B01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735442 ID=EY735442; Name=EY735442; organism=Citrus sinensis; type=EST; length=1022bp
CCACGCGTCCGGAAGAAAGGAGGAATAAGGTTCCCCTTTTAATGGACACT
CATACTTCAACCTGGTTTTGATCACACCTGTCGGAGGAGCAGGAGATGTA
CATTCAGTATCAATCAAGGGTTCAAAGACTGGATGGCAAGCAATGTCAAG
GAACTGGGGCCAAAATTGGCAGAGCAATTCTTATCTTAACGGCCAAAGTC
TTTCTTTCCAATTGACAGCCAGTGACGGCAGGACTGTGACTAGCAACAAT
GTTGTGCCTGGAAATTGGCAATTTGGGCAAACCTTTGAGGGTGGTCAGTT
TTAGATTTTAAAAAAGTGAATCAGAATTTGTATATTTAATTGAATTTGGC
ACTGTTTGTGAGGGAGGAAGGGTGAGAATAGGGGTAGGTGAGGCTCAGGC
CTGGCCGATGTGGCCTGTCTTGTTGCTGTGGTGGTCTGTTGGCACCCGCT
AGGCCTCTATAAATAGAAATGATTGTGTTCTAAATATAGTTATTACTTCA
ATTGAATGAACGGGTATAAATTTCATTTCTATCAAATATATATACAAAAA
ATATAACTACTTCAACTATTATATAAAAATAAAATTTAAAAGGGAAATGG
GGCGGCCCCTCAAAAAGAACCAAACTTAAATATACGCGGGCTGGCAAACT
CAAAGCCCTTTCAAAAGGGGCACCCAAAATTAATTCCCGTGGGCCGCCTT
TTAAAAACGCCCGGACCGGGGAAAAACCCGGGGGTTACCCCATAATAATC
CCCTTCGCACCCCATCCCCCTTTTCCCCCACTTGGGATAAAATCAGGAAA
AGAGCCCCCCCCATTCCCCCCTTTTCCAAATTTTTCCCACCCCCTTAAAG
GGGAAAAGGGAACCCACCCCTGTATCCGCCCCCCAATATTACCGCGGAGG
GGGGGTGGGGGGGTTAACCCCCCGGAGAGGGCACCCCCACACATTTTGGG
CGAGCCCCTCCACCCCCCCCCCCCTCCTATTTTAATTCTTTTTTTTCTCT
TCTTTTTTTTTTTTTCACTCCA
back to top