EY735286

Overview
NameEY735286
Unique NameEY735286
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length972
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735286 vs. ExPASy Swiss-Prot
Match: HEM1_SYNSC (Glutamyl-tRNA reductase OS=Synechococcus sp. (strain CC9605) GN=hemA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.335e-24
Identity = 69/191 (36.13%), Postives = 116/191 (60.73%), Query Frame = 1
Query:   25 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPY*LEIESLC*RNQGGQVRINALSKMG 597
            ++ V+GAG+M +L+++HL AKG + +V++NR+ ER   +  +   + +  +PL+++    +   ++FTSTA++ P+        L P+      LRL IDI VPRN+ +  ADV     ++VDDL+EVVA N+E R   A EA+ ++ +E++QF  W DSLE VP   ++ S     +  +++  ALS+MG
Sbjct:  193 QIAVVGAGRMSRLLLQHLQAKGASGVVLLNRTVERAEQLSADFPDLPVQCRPLTDLDQYLSTCSLMFTSTAADDPII---DAARLAPLNRR-SKLRL-IDIGVPRNIAADAADVNGVESHDVDDLQEVVARNQEARQAMAREAEQLLQQEAQQFLEWWDSLEAVPTINQLRSSMESIRTEELQ-KALSRMG 377          
BLAST of EY735286 vs. ExPASy Swiss-Prot
Match: HEM1_CYAPA (Glutamyl-tRNA reductase OS=Cyanophora paradoxa GN=hemA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.335e-24
Identity = 66/206 (32.04%), Postives = 116/206 (56.31%), Query Frame = 1
Query:   19 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPY*LEIESLC*RNQGGQVRI----NALSKMGEGILKKNKE 624
            TA + ++GAGKM +L+++HL++K    + +VNRS ER   + ++     I    LSE+ +   ++D+VFT T+S+ P+   + + D   + + +    +  DI+VPRNV   V+  +  +V+NVDDLK VV+ N++ R + A  A+ ++ EE   F  W  SLE +P    I  L  R +   +R+     A+S++G   +  ++E
Sbjct:  182 TANITILGAGKMSRLLVQHLLSKRVKDINIVNRSVERAKLLVDQFKEANINIYNLSELKTILQNSDIVFTGTSSQEPIITPELINDCDNLPSEL----MLFDIAVPRNVDPNVSQFDNIKVFNVDDLKVVVSQNQQTRRKMAKAAEILLEEELSAFNIWWGSLEAIP---TINKL--REKAEIIRVKELEKAISRLGNEFVSDHQE 378          
BLAST of EY735286 vs. ExPASy Swiss-Prot
Match: HEM1_PROMA (Glutamyl-tRNA reductase OS=Prochlorococcus marinus GN=hemA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.743e-24
Identity = 61/165 (36.97%), Postives = 100/165 (60.61%), Query Frame = 1
Query:   25 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVP 519
            ++ VIGAG+M +L+I+HL +KGC+K+ ++NR+  R  ++ ++   +++    L ++  C   + ++FTSTAS  P+   + +            L   IDI VPRN+ S V+ +     Y+VDDL+EVVA N++ R + A+EAQ +I EE++ F  W  SLE VP
Sbjct:  193 KVAVIGAGRMSRLLIQHLQSKGCSKLTLLNRTLNRAESLAKDFPDLDVKCGLLDDLDKCIEFSTLIFTSTASNTPIINSELLSGFK----RNNNLLRLIDIGVPRNIASDVSGLPGFEAYDVDDLQEVVARNQDARQQIAIEAQNLIDEEARVFLEWWASLEAVP 353          
BLAST of EY735286 vs. ExPASy Swiss-Prot
Match: HEM1_PROM4 (Glutamyl-tRNA reductase OS=Prochlorococcus marinus (strain MIT 9211) GN=hemA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.277e-24
Identity = 62/165 (37.58%), Postives = 106/165 (64.24%), Query Frame = 1
Query:   25 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVP 519
            ++ ++GAG+M +L+I+HL +KGC+K+ ++NR+ +R  A+  +   V+I  + L ++     ++ ++FTSTA+E P+     ++++   E     LRL IDI VPRN+ S V  +     ++VDDL+EVV+ N+E R + A+EA+A++ EE + F  W  SLE VP
Sbjct:  193 KVSIVGAGRMSRLLIQHLQSKGCSKLKLINRTFQRAEALALDFPDVDIHCQLLDDLDESLRNSTLIFTSTAAENPIIDAARLKEVVRDET----LRL-IDIGVPRNISSDVKGLTGFEAHDVDDLQEVVSRNQEARQQIALEAEALVDEEGRIFLEWWASLEAVP 352          
BLAST of EY735286 vs. ExPASy Swiss-Prot
Match: HEM1_VIBVU (Glutamyl-tRNA reductase OS=Vibrio vulnificus GN=hemA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.973e-24
Identity = 73/192 (38.02%), Postives = 110/192 (57.29%), Query Frame = 1
Query:   28 MLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPY*LEIESLC*RNQGGQVRINALSK 591
            +L++GAG+  +LV KHL A GC+KM+V NR+ ER   + E+ +   I    L E+ +  A AD+V +STAS  P+  K  V      E A+   R    L +DI+VPR+V + V D+  A +Y VDDL+ ++ +N E R  +A++A+AI+ EES  F +W  SL+ V    E      R    ++R + LSK
Sbjct:  183 VLLVGAGETIELVAKHLHANGCSKMIVANRTRERALTLAEQFDAQVI---SLQEIPNHLAKADIVISSTASPLPIIGKGMV------ETALKQRRHQPMLLVDIAVPRDVEAQVGDLNDAYLYTVDDLQSIIDSNIEQRKVEAIQAEAIVAEESAAFMSWLRSLQAVDSIREY-----RQSANEIREDLLSK 360          
BLAST of EY735286 vs. ExPASy Swiss-Prot
Match: HEM1_PERMH (Glutamyl-tRNA reductase OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=hemA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.624e-24
Identity = 71/217 (32.72%), Postives = 116/217 (53.46%), Query Frame = 1
Query:   28 MLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPY*LEIESLC*RNQGGQVRINALSKMGEG---ILKKNKEGLAMTLPVVIRNNLL 669
            +L++GAG+M +L  +HL + G   + V NR+ E+   + EE  G  I +  L E L    ++D+V  ST ++ P+  K+H +++  +    G     IDISVPRNV   V DV+   +YN+DDLK VV  N E+R   A+ A+ ++ EE  +F  W + L+  P   +I     RN   ++R   L K+      + +K +E + + +  +I N LL
Sbjct:  185 VLLLGAGEMAELAARHLSSSGVKHIFVSNRTFEKAVQLAEEFGGSAIRFDKLFEFLP---ESDIVIVSTGAKEPILRKEHFEEINRIRK--GDPVFIIDISVPRNVAEDVNDVDNVYLYNIDDLKVVVDKNLEERKLAALSAEMMLDEEVHKFEHWLNQLKVAPLITKI-----RNYADEIREYQLEKLFNQMPYLNEKERENIDLAVRAII-NKLL 390          
BLAST of EY735286 vs. ExPASy Swiss-Prot
Match: HEM1_VIBHB (Glutamyl-tRNA reductase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=hemA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.651e-24
Identity = 73/198 (36.87%), Postives = 115/198 (58.08%), Query Frame = 1
Query:   10 SHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLR----LFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPY*LEIESLC*RNQGGQVRINALSK 591
            S + + +L++GAG+  +LV KHL + GCTKM+V NR+ ER   + E+  G E+I   L+E+      AD+V +STAS  P+  K  V      E A+   R    L +DI+VPR+V + V ++  A +Y+VDDL+ ++ +N E R  +A++A+AI++EES  F  W  SL+ V    +      R    ++R + LSK
Sbjct:  177 SLSDSTVLLVGAGETIELVAKHLASNGCTKMIVANRTRERALGLGEQF-GAEVI--SLNEIPDHLPRADIVISSTASPLPIIGKGMV------ETALKKRRHQPMLLVDIAVPRDVEAQVGELSDAYLYSVDDLQSIIDSNIEQRKVEAIQAEAIVSEESAAFMTWLRSLQAVDSIRDY-----RKSANEIREDLLSK 360          
BLAST of EY735286 vs. ExPASy Swiss-Prot
Match: HEM1_PROMT (Glutamyl-tRNA reductase OS=Prochlorococcus marinus (strain NATL2A) GN=hemA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.651e-24
Identity = 63/169 (37.28%), Postives = 103/169 (60.95%), Query Frame = 1
Query:   19 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQ--DLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVP 519
            T ++ V+GAG+M +L+++HL +KGC  + ++NR+++R   +      ++I  + + E+ SC + + +VFTSTA+  P+   + +   D  P+      LRL IDI VPRN+ S    V     ++VDDL+EVV+ N+E R + A+EA+ +I EE + F  W DSL  VP
Sbjct:  191 TEKVAVVGAGRMSRLLLQHLQSKGCCSLTLLNRTKKRAEDLSAAFPDIQIDCQLIDELDSCLSLSTLVFTSTAANEPIIDAEKLIKIDRKPL------LRL-IDIGVPRNISSDAKSVSGIESHDVDDLQEVVSRNQEARQKLALEAEGLIEEECRVFLEWWDSLAAVP 352          
BLAST of EY735286 vs. ExPASy Swiss-Prot
Match: HEM1_PROM1 (Glutamyl-tRNA reductase OS=Prochlorococcus marinus (strain NATL1A) GN=hemA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.130e-23
Identity = 61/167 (36.53%), Postives = 101/167 (60.48%), Query Frame = 1
Query:   19 TARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVP 519
            T ++ V+GAG+M +L+++HL +KGC  + ++NR+ +R   +      ++I  + + E+ SC + + +VFTSTA+  P+   + + ++         LRL IDI VPRN+ S    V     ++VDDL+EVV+ N+E R + A+EA+ +I EE + F  W DSL  VP
Sbjct:  191 TEKVAVVGAGRMSRLLLQHLQSKGCCSLTLLNRTRKRAEDLSAAFPDIQIDCQLIDELDSCLSLSTLVFTSTAANEPIIDAEKLINIDRKPL----LRL-IDIGVPRNISSDAKSVSGIESHDVDDLQEVVSRNQEARQKLALEAEGLIEEECRVFLEWWDSLAAVP 352          
BLAST of EY735286 vs. ExPASy Swiss-Prot
Match: HEM1_PROMP (Glutamyl-tRNA reductase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=hemA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.476e-23
Identity = 65/166 (39.16%), Postives = 100/166 (60.24%), Query Frame = 1
Query:   25 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVE-AAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVP 519
            ++LV+GAG+M +L+I HL +KGC ++ ++NR+ ER   +  +   +EI  K L+E+    + + +VFTSTASE P        DL  VE  ++     FIDI VPRN+ + V        ++VDDL+EVV+ N+E R + A EA++++ +E   F  W  SLE VP
Sbjct:  193 KVLVVGAGRMSRLLITHLKSKGCNRLTLLNRNIERAVNLAGDFPDLEINCKSLNELDKNISLSSLVFTSTASEKPFI------DLARVEKISLNNKLKFIDIGVPRNISNDVKHHAFIESFDVDDLEEVVSRNQEFRQKIAKEAESLVKDERIIFLEWWASLEAVP 352          
The following BLAST results are available for this feature:
BLAST of EY735286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 421
Match NameE-valueIdentityDescription
HEM1_SYNSC1.335e-2436.13Glutamyl-tRNA reductase OS=Synechococcus sp. (stra... [more]
HEM1_CYAPA1.335e-2432.04Glutamyl-tRNA reductase OS=Cyanophora paradoxa GN=... [more]
HEM1_PROMA1.743e-2436.97Glutamyl-tRNA reductase OS=Prochlorococcus marinus... [more]
HEM1_PROM42.277e-2437.58Glutamyl-tRNA reductase OS=Prochlorococcus marinus... [more]
HEM1_VIBVU2.973e-2438.02Glutamyl-tRNA reductase OS=Vibrio vulnificus GN=he... [more]
HEM1_PERMH6.624e-2432.72Glutamyl-tRNA reductase OS=Persephonella marina (s... [more]
HEM1_VIBHB8.651e-2436.87Glutamyl-tRNA reductase OS=Vibrio harveyi (strain ... [more]
HEM1_PROMT8.651e-2437.28Glutamyl-tRNA reductase OS=Prochlorococcus marinus... [more]
HEM1_PROM11.130e-2336.53Glutamyl-tRNA reductase OS=Prochlorococcus marinus... [more]
HEM1_PROMP1.476e-2339.16Glutamyl-tRNA reductase OS=Prochlorococcus marinus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-093-C07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735286 ID=EY735286; Name=EY735286; organism=Citrus sinensis; type=EST; length=972bp
CCTGAATCTTCACATGCCACTGCCCGGATGTTGGTTATTGGAGCAGGCAA
GATGGGGAAGCTTGTGATAAAACACTTGGTAGCCAAAGGATGCACTAAGA
TGGTGGTTGTAAACAGGTCAGAAGAGAGAGTTGCAGCCATCTGCGAGGAG
CTCAACGGTGTTGAGATAATTTATAAACCTCTCTCAGAAATGTTGTCCTG
TGCTGCTGATGCAGATGTGGTCTTCACCAGCACAGCATCTGAAGCTCCAT
TATTCTTGAAGGATCATGTTCAGGACCTTCCTCCCGTTGAGGCTGCAGTT
GGGGGTTTGAGGCTCTTTATTGATATCTCCGTTCCTCGTAATGTGGGCTC
TTGTGTTGCAGATGTTGAAACTGCACGGGTTTACAATGTTGATGACCTTA
AGGAGGTAGTGGCTGCTAATAAAGAGGACAGGCTCCGAAAAGCAATGGAA
GCTCAGGCTATTATCACTGAGGAATCAAAACAGTTTGCAGCTTGGAGGGA
TTCATTGGAGACTGTTCCCTACTAATTAGAAATTGAGAGCTTATGCTGAA
GAAATCAGGGTGGGCAAGTTAGAATAAATGCCCTATCAAAAATGGGTGAA
GGAATCCTCAAAAAAAACAAGGAGGGGCTGGCAATGACCTTACCCGTGGT
AATCAGGAATAACCTTCTTTCTGGGGCCCAATGGCACCCTTTGGAAATGG
GGGGGGAATGGAAGCAGGGATTCTAAAGAAAACCCTTGGAAAACTGGGCT
GGCTTAAAAAAAAAAGGGTTGGGCCTTGAAAAAAAAAAACATTTCTCTTT
TCCAAAGAAAAAGGGGTCGGGCGCAAAAAAAAAAAAAAAACCCCAAAAGG
GGGGACTTTTTTGAAAAACAAGGTTTTGTGCAAAGGGGGACCTTTCTTTT
TTCCCTTTCCCCCAAAATAGTAAAAAAAAAAAAAAAAAAAACCCCCTCCC
CCCCCCTTTGTTGTGGGGTGGT
back to top