EY735286

Overview
NameEY735286
Unique NameEY735286
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length972
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735286 vs. ExPASy Swiss-Prot
Match: HEM1_SHEPW (Glutamyl-tRNA reductase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.077e-21
Identity = 71/223 (31.84%), Postives = 120/223 (53.81%), Query Frame = 1
Query:    7 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPY*LE--IESLC*RNQGGQVRINALSKMGEGILKKNKEGLAMTLPVVIRNNLL 669
            SS +T ++L++GAG+  +LV +HL   G   MVV NR+  R  A+C+E     I  + + + L     AD+V +STAS  P+  K  V+    ++       L +DI+VPR++ + VAD++ A +Y VDDL+ ++  N   R   A +A+ I  ++S QF  W  SLE+V    E   +S+  +++  +  +N L++ G      N E + + L   + N L+
Sbjct:  174 SSLSTTQVLLVGAGETIELVARHLKDNGVKTMVVANRTISRAEAMCDEFGATAITLEQIPDFLP---KADIVISSTASPLPILGKGMVEKA--LKQRRHQPMLLVDIAVPRDIEAEVADLDDAFLYTVDDLQSIIEQNMASRREAAEQAELIADDQSYQFMEWIRSLESVDSIREYRTQSMAIKDELVERAVNKLAQGG------NSEQVLLELANKLTNKLI 385          
BLAST of EY735286 vs. ExPASy Swiss-Prot
Match: HEM1_NATTJ (Glutamyl-tRNA reductase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 4.019e-21
Identity = 59/165 (35.76%), Postives = 94/165 (56.97%), Query Frame = 1
Query:   25 RMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVP 519
            R L+IGAGKM +L  +HL + G   ++V+NR+ ER   + ++  G+   Y  LSE L+   + D+V TST   AP F+    Q    +++        IDI+VPR+V   V + + A +Y +DDL+ VV +N ++R  +A  A+ II+EE  +F  W  + + VP
Sbjct:  186 RALIIGAGKMSELAARHLYSNGVKDVIVINRTIERAKNLADKFGGLYASYDQLSEWLN---EIDIVITSTG--APHFVIKEEQIKRAMKSRKYSPMFLIDIAVPRDVEPSVNNQDNAYLYTIDDLEAVVESNMQERQEEARNAELIISEEVAEFMVWYKTRDVVP 345          
BLAST of EY735286 vs. ExPASy Swiss-Prot
Match: HEM1_SHESW (Glutamyl-tRNA reductase OS=Shewanella sp. (strain W3-18-1) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 5.248e-21
Identity = 72/203 (35.47%), Postives = 106/203 (52.22%), Query Frame = 1
Query:    7 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPY*LEIESLC*RNQGGQVR----INALSKMGEG 603
            SS +T ++L+IGAG+  +LV KHL   G   MVV NR+ ER   +CEE     I    + + L     AD+V +STAS  P+  K  V+    ++       L +DI+VPR++   VAD++ A +Y VDDL  ++  N   R   A +A+ I  E+S  F  W  SLE+V    E      RNQ   ++      AL+K+ +G
Sbjct:  174 SSLSTTKVLLIGAGETIELVAKHLKDNGVASMVVANRTLERAQGMCEEFGATAITLAQIPDYLP---KADIVISSTASPLPILGKGMVEKA--LKQRRHQPMLLVDIAVPRDIEPEVADLDDAFLYTVDDLHSIIEQNMASRKEAAEQAELITEEQSYLFMDWVRSLESVDSIREY-----RNQSMAIKDELVERALNKLAQG 366          
BLAST of EY735286 vs. ExPASy Swiss-Prot
Match: HEM1_SHEPC (Glutamyl-tRNA reductase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=hemA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 5.248e-21
Identity = 72/203 (35.47%), Postives = 106/203 (52.22%), Query Frame = 1
Query:    7 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPY*LEIESLC*RNQGGQVR----INALSKMGEG 603
            SS +T ++L+IGAG+  +LV KHL   G   MVV NR+ ER   +CEE     I    + + L     AD+V +STAS  P+  K  V+    ++       L +DI+VPR++   VAD++ A +Y VDDL  ++  N   R   A +A+ I  E+S  F  W  SLE+V    E      RNQ   ++      AL+K+ +G
Sbjct:  174 SSLSTTKVLLIGAGETIELVAKHLKDNGVASMVVANRTLERAQGMCEEFGATAITLAQIPDYLP---KADIVISSTASPLPILGKGMVEKA--LKQRRHQPMLLVDIAVPRDIEPEVADLDDAFLYTVDDLHSIIEQNMASRKEAAEQAELITEEQSYLFMDWVRSLESVDSIREY-----RNQSMAIKDELVERALNKLAQG 366          
BLAST of EY735286 vs. ExPASy Swiss-Prot
Match: HEM1_SULSY (Glutamyl-tRNA reductase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=hemA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.855e-21
Identity = 58/164 (35.37%), Postives = 98/164 (59.76%), Query Frame = 1
Query:   28 MLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVP 519
            +L+IGAG+M +L  KHL +     + V NR+ E+   + ++ +G  I ++ + E L    +AD++  ST ++ P+  K+ V+    +++    L   IDISVPRNV   V ++E   +YN+DDLK+VV +N E+R  +A  A+ II EE ++F  W ++L+  P
Sbjct:  186 VLIIGAGEMAELAAKHLHSLNVKHIFVSNRTFEKAVELADKFSGSAIRFEKIQEFLP---EADIIIVSTGAKEPILKKEDVKRA--IKSRKDPL-FIIDISVPRNVEESVNELEGVYLYNIDDLKQVVNSNLEERKIEAQRAEFIIDEEVEKFVKWLNALKVSP 343          
BLAST of EY735286 vs. ExPASy Swiss-Prot
Match: HEM1_SHEHH (Glutamyl-tRNA reductase OS=Shewanella halifaxensis (strain HAW-EB4) GN=hemA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.855e-21
Identity = 70/223 (31.39%), Postives = 120/223 (53.81%), Query Frame = 1
Query:    7 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETVPY*LE--IESLC*RNQGGQVRINALSKMGEGILKKNKEGLAMTLPVVIRNNLL 669
            SS +T ++L++GAG+  +LV +HL   G   MVV NR+  R  A+C+E     I  + + + L     AD+V +STAS  P+  K  V+    ++       L +DI+VPR++ + VAD++ A +Y VDDL+ ++  N   R   A +A+ I  +++ QF  W  SLE+V    E   +S+  +++  +  +N L++ G      N E + + L   + N L+
Sbjct:  174 SSLSTTQVLLVGAGETIELVARHLKDNGVKAMVVANRTISRAEAMCDEFGATAITLEQIPDFLP---KADIVISSTASPLPILGKGMVEKA--LKQRRHQPMLLVDIAVPRDIEAEVADLDDAFLYTVDDLQSIIEQNMASRREAAEQAELIAEDQAYQFMEWIRSLESVDSIREYRTQSMAIKDELVERAVNKLAQGG------NSEQVLLELANKLTNKLI 385          
BLAST of EY735286 vs. ExPASy Swiss-Prot
Match: HEM1_SHEAM (Glutamyl-tRNA reductase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=hemA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.855e-21
Identity = 62/170 (36.47%), Postives = 96/170 (56.47%), Query Frame = 1
Query:    7 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETV 516
            SS A+ ++L+IGAG+  +LV +HL   G + MVV NR+ ER  A+CEE     I    + + L     AD+V +STAS  P+  K  V+    ++       L +DI+VPR++ + V +++ A +Y VDDL+ ++  N   R   A +A+ I  E+S  F  W  SLE+V
Sbjct:  174 SSLASTKVLLIGAGETIELVARHLKENGVSSMVVANRTVERAQAMCEEFGATAITLSQIPDFLP---KADIVISSTASPLPILGKGMVEKA--LKQRRHQPMLLVDIAVPRDIEAEVGELDDAFLYTVDDLQSIIEQNMASRKEAAEQAEVIAQEQSFLFMDWIRSLESV 338          
BLAST of EY735286 vs. ExPASy Swiss-Prot
Match: HEM1_SHEB9 (Glutamyl-tRNA reductase OS=Shewanella baltica (strain OS195) GN=hemA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.953e-21
Identity = 64/170 (37.65%), Postives = 93/170 (54.71%), Query Frame = 1
Query:    7 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETV 516
            SS +T ++L+IGAG+  +LV KHL   G   MVV NR+ ER   +CEE     I    + + L     AD+V +STAS  P+  K  V+    ++       L +DI+VPR++   VAD++ A +Y VDDL  ++  N   R   A +A+ I  E+S  F  W  SLE+V
Sbjct:  174 SSISTTKVLLIGAGETIELVAKHLKDNGVASMVVANRTLERAQGMCEEFGATAITLAQIPDYLP---KADIVISSTASPLPILGKGMVEKA--LKQRRHQPMLLVDIAVPRDIEPEVADLDDAFLYTVDDLHSIIEQNMASRKEAAEQAEVITEEQSFLFMDWIRSLESV 338          
BLAST of EY735286 vs. ExPASy Swiss-Prot
Match: HEM1_SHEB8 (Glutamyl-tRNA reductase OS=Shewanella baltica (strain OS185) GN=hemA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.953e-21
Identity = 64/170 (37.65%), Postives = 93/170 (54.71%), Query Frame = 1
Query:    7 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETV 516
            SS +T ++L+IGAG+  +LV KHL   G   MVV NR+ ER   +CEE     I    + + L     AD+V +STAS  P+  K  V+    ++       L +DI+VPR++   VAD++ A +Y VDDL  ++  N   R   A +A+ I  E+S  F  W  SLE+V
Sbjct:  174 SSISTTKVLLIGAGETIELVAKHLKDNGVASMVVANRTLERAQGMCEEFGATAITLAQIPDYLP---KADIVISSTASPLPILGKGMVEKA--LKQRRHQPMLLVDIAVPRDIEPEVADLDDAFLYTVDDLHSIIEQNMASRKEAAEQAEVITEEQSFLFMDWIRSLESV 338          
BLAST of EY735286 vs. ExPASy Swiss-Prot
Match: HEM1_SHEB5 (Glutamyl-tRNA reductase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=hemA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.953e-21
Identity = 64/170 (37.65%), Postives = 93/170 (54.71%), Query Frame = 1
Query:    7 SSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVAAICEELNGVEIIYKPLSEMLSCAADADVVFTSTASEAPLFLKDHVQDLPPVEAAVGGLRLFIDISVPRNVGSCVADVETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFAAWRDSLETV 516
            SS +T ++L+IGAG+  +LV KHL   G   MVV NR+ ER   +CEE     I    + + L     AD+V +STAS  P+  K  V+    ++       L +DI+VPR++   VAD++ A +Y VDDL  ++  N   R   A +A+ I  E+S  F  W  SLE+V
Sbjct:  174 SSISTTKVLLIGAGETIELVAKHLKDNGVASMVVANRTLERAQGMCEEFGATAITLAQIPDYLP---KADIVISSTASPLPILGKGMVEKA--LKQRRHQPMLLVDIAVPRDIEPEVADLDDAFLYTVDDLHSIIEQNMASRKEAAEQAEVITEEQSFLFMDWIRSLESV 338          
The following BLAST results are available for this feature:
BLAST of EY735286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 421
Match NameE-valueIdentityDescription
HEM1_SHEPW3.077e-2131.84Glutamyl-tRNA reductase OS=Shewanella piezotoleran... [more]
HEM1_NATTJ4.019e-2135.76Glutamyl-tRNA reductase OS=Natranaerobius thermoph... [more]
HEM1_SHESW5.248e-2135.47Glutamyl-tRNA reductase OS=Shewanella sp. (strain ... [more]
HEM1_SHEPC5.248e-2135.47Glutamyl-tRNA reductase OS=Shewanella putrefaciens... [more]
HEM1_SULSY6.855e-2135.37Glutamyl-tRNA reductase OS=Sulfurihydrogenibium sp... [more]
HEM1_SHEHH6.855e-2131.39Glutamyl-tRNA reductase OS=Shewanella halifaxensis... [more]
HEM1_SHEAM6.855e-2136.47Glutamyl-tRNA reductase OS=Shewanella amazonensis ... [more]
HEM1_SHEB98.953e-2137.65Glutamyl-tRNA reductase OS=Shewanella baltica (str... [more]
HEM1_SHEB88.953e-2137.65Glutamyl-tRNA reductase OS=Shewanella baltica (str... [more]
HEM1_SHEB58.953e-2137.65Glutamyl-tRNA reductase OS=Shewanella baltica (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-093-C07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735286 ID=EY735286; Name=EY735286; organism=Citrus sinensis; type=EST; length=972bp
CCTGAATCTTCACATGCCACTGCCCGGATGTTGGTTATTGGAGCAGGCAA
GATGGGGAAGCTTGTGATAAAACACTTGGTAGCCAAAGGATGCACTAAGA
TGGTGGTTGTAAACAGGTCAGAAGAGAGAGTTGCAGCCATCTGCGAGGAG
CTCAACGGTGTTGAGATAATTTATAAACCTCTCTCAGAAATGTTGTCCTG
TGCTGCTGATGCAGATGTGGTCTTCACCAGCACAGCATCTGAAGCTCCAT
TATTCTTGAAGGATCATGTTCAGGACCTTCCTCCCGTTGAGGCTGCAGTT
GGGGGTTTGAGGCTCTTTATTGATATCTCCGTTCCTCGTAATGTGGGCTC
TTGTGTTGCAGATGTTGAAACTGCACGGGTTTACAATGTTGATGACCTTA
AGGAGGTAGTGGCTGCTAATAAAGAGGACAGGCTCCGAAAAGCAATGGAA
GCTCAGGCTATTATCACTGAGGAATCAAAACAGTTTGCAGCTTGGAGGGA
TTCATTGGAGACTGTTCCCTACTAATTAGAAATTGAGAGCTTATGCTGAA
GAAATCAGGGTGGGCAAGTTAGAATAAATGCCCTATCAAAAATGGGTGAA
GGAATCCTCAAAAAAAACAAGGAGGGGCTGGCAATGACCTTACCCGTGGT
AATCAGGAATAACCTTCTTTCTGGGGCCCAATGGCACCCTTTGGAAATGG
GGGGGGAATGGAAGCAGGGATTCTAAAGAAAACCCTTGGAAAACTGGGCT
GGCTTAAAAAAAAAAGGGTTGGGCCTTGAAAAAAAAAAACATTTCTCTTT
TCCAAAGAAAAAGGGGTCGGGCGCAAAAAAAAAAAAAAAACCCCAAAAGG
GGGGACTTTTTTGAAAAACAAGGTTTTGTGCAAAGGGGGACCTTTCTTTT
TTCCCTTTCCCCCAAAATAGTAAAAAAAAAAAAAAAAAAAACCCCCTCCC
CCCCCCTTTGTTGTGGGGTGGT
back to top