EY735206

Overview
NameEY735206
Unique NameEY735206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735206 vs. ExPASy Swiss-Prot
Match: ISPA_BRAJA (Probable geranyltranstransferase OS=Bradyrhizobium japonicum GN=fppS PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.996e-17
Identity = 53/134 (39.55%), Postives = 75/134 (55.97%), Query Frame = 2
Query:  275 QIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLSVIAEIARAVGSTGMAAGQFLDL 676
            ++  +MRY+ L  G KR   ++C+AA  L             A+EM+HA +L+HDDLP MDDD  RRG P+ H  +G   AIL GDAL    F  + S   P   P    ++++ E+A+AV + G A GQ +DL
Sbjct:   61 ELMAAMRYATL-HGGKRTRALLCLAAGALADTPAHMLDDVGAAIEMMHACTLVHDDLPAMDDDVLRRGLPTVHVKFGEATAILVGDALQAHAFLTLASLNAPGDSP----IALVRELAQAVSAEGAAGGQAIDL 189          
BLAST of EY735206 vs. ExPASy Swiss-Prot
Match: ISPA_RHISN (Probable geranyltranstransferase OS=Rhizobium sp. (strain NGR234) GN=NGR_a02750 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.585e-17
Identity = 52/134 (38.81%), Postives = 74/134 (55.22%), Query Frame = 2
Query:  275 QIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLSVIAEIARAVGSTGMAAGQFLDL 676
            ++  +MRY+ L  G KR   ++C+AA  L             A+EM+HA +L+HDDLP MDDD  RRG P+ H  +G   AIL GDAL    F  + S       P    ++++ E+A+AV + G A GQ +DL
Sbjct:   61 ELMAAMRYATL-HGGKRTRALLCLAAGALADTPAHILDDVGAAIEMMHACTLVHDDLPAMDDDVLRRGLPTVHVKFGEATAILVGDALQAHAFLTLASLD----APGDNRIALVRELAQAVSAEGAAGGQAMDL 189          
BLAST of EY735206 vs. ExPASy Swiss-Prot
Match: CRTE_ESCVU (Geranylgeranyl pyrophosphate synthetase OS=Escherichia vulneris GN=crtE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.868e-15
Identity = 50/131 (38.17%), Postives = 72/131 (54.96%), Query Frame = 2
Query:  287 SMRYSVLAKGTKRAPPVMCVAACEL-FGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLSVIAEIARAVGSTGMAAGQFLDL 676
            +MR  V+A G +  P +M +AA +L +  +       ACA+E+ H ASL+ DD+PCMD+   RRGQP+ H  +G  +AILA   L    F  I +      +P  R    + E++ AVG  G+  GQF DL
Sbjct:   42 AMREGVMAPGKRIRPLLMLLAARDLRYQGSMPTLLDLACAVELTHTASLMLDDMPCMDNAELRRGQPTTHKKFGESVAILASVGLLSKAFGLIAATGD---LPGERRAQAVNELSTAVGVQGLVLGQFRDL 169          
BLAST of EY735206 vs. ExPASy Swiss-Prot
Match: IDSA_METTM (Bifunctional short chain isoprenyl diphosphate synthase OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=idsA PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 7.100e-15
Identity = 49/148 (33.11%), Postives = 81/148 (54.73%), Query Frame = 2
Query:  233 DQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLSVIAEIARAVGSTGMAAGQFLDL 676
            D+ + + I+   P+ + ++  + + A G K+  P + + +CE  G N   A   A A+E++H  SLIHDD+  MDDD  RRG+PS H ++G  +AILAGD LF   F+ ++ +     V +   L+V+ +         +  GQ LD+
Sbjct:   16 DKRIMECISDITPDTLLKASEHLITAGG-KKIRPSLALLSCEAVGGNPEDAAGVAAAIELIHTFSLIHDDI--MDDDEMRRGEPSVHVIWGEPMAILAGDVLFSKAFEAVIRNGDSERVKD--ALAVVVD-----SCVKICEGQALDM 153          
BLAST of EY735206 vs. ExPASy Swiss-Prot
Match: CRTE_RHOS4 (Geranylgeranyl pyrophosphate synthetase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=crtE PE=3 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 4.602e-14
Identity = 47/149 (31.54%), Postives = 73/149 (48.99%), Query Frame = 2
Query:  269 PEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLSVIAEIARAVGSTGMAAGQFLDLEGGTHLVEFCQKK 715
            P ++  ++ Y+V   G +  P ++   A          +   A ALE++H ASL+HDDLPC DD   RRG+P+ H  Y   +AIL GD+L  +GF+ +         P+  +  V A   R     G+ AGQ  + E   +L  + + K
Sbjct:   24 PSKLATALDYAVTPGGARIRPTLLLSVATACGDDRPALSDAAAVALELIHCASLVHDDLPCFDDAEIRRGKPTVHRAYSEPLAILTGDSLIVMGFEVLARAAADQ--PQRALQLVTALAVRTGMPMGICAGQGWESESQINLSAYHRAK 170          
BLAST of EY735206 vs. ExPASy Swiss-Prot
Match: IDSA_METTH (Bifunctional short chain isoprenyl diphosphate synthase OS=Methanobacterium thermoautotrophicum GN=idsA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.850e-14
Identity = 48/148 (32.43%), Postives = 81/148 (54.73%), Query Frame = 2
Query:  233 DQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLSVIAEIARAVGSTGMAAGQFLDL 676
            D+ + ++I+   PE +  +  + + A G K+  P + + + E  G +   A   A A+E++H  SLIHDD+  MDDD  RRG+P+ H ++G  +AILAGD LF   F+ ++ +    +V E   L+V+ +         +  GQ LD+
Sbjct:   16 DERIRESISDITPETLLRASEHLITAGG-KKIRPSLALLSSEAVGGDPGDAAGVAAAIELIHTFSLIHDDI--MDDDEIRRGEPAVHVLWGEPMAILAGDVLFSKAFEAVIRNGDSEMVKE--ALAVVVD-----SCVKICEGQALDM 153          
BLAST of EY735206 vs. ExPASy Swiss-Prot
Match: CRTE_RHOCA (Geranylgeranyl pyrophosphate synthetase OS=Rhodobacter capsulatus GN=crtE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.749e-13
Identity = 54/171 (31.58%), Postives = 82/171 (47.95%), Query Frame = 2
Query:  230 IDQNLEKAITVKY-PEQIYES-------MRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLSVIAEIARAVGST-GMAAGQFLDLEGGTHLVEFCQKK 715
            +D+ +E A+     PE + ES       + Y V   G +  P ++   A              A ALE++H ASL+HDDLP  D+   RRG+PS H  Y   +A+LAGD+L   GF+ +        V   R L +I+++ +  G+  G+ AGQ  + E    L  + Q K
Sbjct:    3 LDKRIESALVKALSPEALGESPPLLAAALPYGVFPGGARIRPTILVSVALACGDDCPAVTDAAAVALELMHCASLVHDDLPAFDNADIRRGKPSLHKAYNEPLAVLAGDSLLIRGFEVLAD---VGAVNPDRALKLISKLGQLSGARGGICAGQAWESESKVDLAAYHQAK 170          
BLAST of EY735206 vs. ExPASy Swiss-Prot
Match: GGPS_SULAC (Geranylgeranyl pyrophosphate synthetase OS=Sulfolobus acidocaldarius GN=gds PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.896e-13
Identity = 41/117 (35.04%), Postives = 67/117 (57.26%), Query Frame = 2
Query:  206 YWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQ 556
            Y+  ++  ++  ++  I+   P+ +YE+  Y +   G KR  P++   + +LFG  R  A+    A+E++H  +L+HDD+  MD D  RRG P+ H  YG+ +AILAGD L    FQ
Sbjct:    7 YFNEIVNSVNDIIKSYISGDVPK-LYEAS-YHLFTSGGKRLRPLILTISSDLFGGQRERAYYAGAAIEVLHTFTLVHDDI--MDQDNIRRGLPTVHVKYGLPLAILAGDLLHAKAFQ 119          
BLAST of EY735206 vs. ExPASy Swiss-Prot
Match: IDSA_METJA (Bifunctional short chain isoprenyl diphosphate synthase OS=Methanocaldococcus jannaschii GN=idsA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.307e-12
Identity = 54/182 (29.67%), Postives = 94/182 (51.65%), Query Frame = 2
Query:  218 LITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQHIVSHTPPHLVPEPRVLSVIAEIARAVGSTGMAAGQFLDLEGGTH---LVEFCQ--KKKFGEMNECSTG 748
            ++ +ID+ L+    V   +++Y + ++ + A G KR  P + V    L   +     P A A+E++H  +LIHDD+  MD+D  RRG+P+ H VYG  +AILAGD L+   F+ +       +    +   V+  +++A     +  GQ +D+E   +   + E+    +KK G + E S G
Sbjct:   17 ILQKIDEELKTY--VDKDDKLYNASKHLLFAGG-KRIRPYLTVVTYMLKKDDIEEVLPAAAAVELIHNYTLIHDDI--MDNDDERRGKPTVHVVYGEPMAILAGDLLYAKAFEAV-----SRIKDNKKAHEVLKILSKA--CVEVCEGQAMDMEFENYYPTMEEYLDMIRKKTGALLEASVG 186          
BLAST of EY735206 vs. ExPASy Swiss-Prot
Match: GGPS_SULSO (Geranylgeranyl pyrophosphate synthetase OS=Sulfolobus solfataricus GN=gds PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.625e-12
Identity = 38/121 (31.40%), Postives = 68/121 (56.20%), Query Frame = 2
Query:  194 DLKTYWTTLITEIDQNLEKAITVKYPEQIYESMRYSVLAKGTKRAPPVMCVAACELFGVNRIAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDIAILAGDALFPLGFQ 556
            DL  Y+  ++  ++  ++  +   +  +  E   + +   G KR  P++ V++ +L G +R  A+  A A+E++H  +L+HDD+  MD+D  RRG P+ H  +G  +AILAGD L    F+
Sbjct:    5 DLSLYFNEIVNNVNFRIKNFVKSNF--KTLEEASFHLFTAGGKRLRPLVLVSSSDLIGGDRERAYKAAAAVEILHNFTLVHDDI--MDNDGLRRGLPTVHVKWGEPMAILAGDYLHAKAFE 121          
The following BLAST results are available for this feature:
BLAST of EY735206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
ISPA_BRAJA1.996e-1739.55Probable geranyltranstransferase OS=Bradyrhizobium... [more]
ISPA_RHISN7.585e-1738.81Probable geranyltranstransferase OS=Rhizobium sp. ... [more]
CRTE_ESCVU1.868e-1538.17Geranylgeranyl pyrophosphate synthetase OS=Escheri... [more]
IDSA_METTM7.100e-1533.11Bifunctional short chain isoprenyl diphosphate syn... [more]
CRTE_RHOS44.602e-1431.54Geranylgeranyl pyrophosphate synthetase OS=Rhodoba... [more]
IDSA_METTH7.850e-1432.43Bifunctional short chain isoprenyl diphosphate syn... [more]
CRTE_RHOCA1.749e-1331.58Geranylgeranyl pyrophosphate synthetase OS=Rhodoba... [more]
GGPS_SULAC3.896e-1335.04Geranylgeranyl pyrophosphate synthetase OS=Sulfolo... [more]
IDSA_METJA4.307e-1229.67Bifunctional short chain isoprenyl diphosphate syn... [more]
GGPS_SULSO5.625e-1231.40Geranylgeranyl pyrophosphate synthetase OS=Sulfolo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-102-H10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735206 ID=EY735206; Name=EY735206; organism=Citrus sinensis; type=EST; length=804bp
CCGGAACAATCACAAACGCTTCAATTCAACCTGTACTCCAAAACACCAAA
GAAACAATTTTTTTTAAAAAAAAATGATTTTTTCATCAGCATTATTAGCA
AACCCGCCATGTGTTTGCCTTCCAAGAAAATTCCCCGTTCGTTGTTCGTC
TTTACCAGTCTCTGCTGCAAGCCAGTTGAGATCCACCCAGTTTGATTTGA
AGACTTACTGGACTACCCTTATTACTGAAATTGATCAGAATTTGGAAAAA
GCAATCACAGTTAAGTACCCAGAGCAGATCTATGAATCCATGAGATATTC
GGTGTTAGCCAAGGGAACTAAGCGGGCGCCGCCTGTCATGTGTGTGGCAG
CTTGCGAGCTCTTTGGTGTTAATCGGATTGCAGCTTTTCCCACAGCTTGC
GCTCTTGAAATGGTCCATGCTGCTTCATTGATTCATGACGATCTTCCTTG
CATGGATGATGACCCATCTCGCCGAGGTCAGCCCTCAAACCACACAGTCT
ATGGTGTTGACATAGCTATCCTTGCAGGGGATGCACTCTTCCCCCTTGGT
TTCCAACACATTGTGTCCCACACACCCCCCCATCTCGTGCCTGAGCCCCG
TGTCCTTTCGGTGATTGCTGAGATTGCCCGTGCTGTGGGGTCCACTGGCA
TGGCTGCCGGGCAGTTCCTTGATCTTGAAGGTGGAACCCACTTGGTTGAA
TTTTGCCAGAAAAAAAAATTCGGTGAAATGAATGAGTGCTCCACGGGGGG
GTGGGGGGTTTCTTGGTTGGGGCAAAAGAAGAAGAAAAACCAAAACTTTG
GGGA
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