EY735204

Overview
NameEY735204
Unique NameEY735204
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735204 vs. ExPASy Swiss-Prot
Match: CLPX_XANC8 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Xanthomonas campestris pv. campestris (strain 8004) GN=clpX PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.578e-32
Identity = 93/246 (37.80%), Postives = 139/246 (56.50%), Query Frame = 1
Query:    7 DFDPFSAQRGIVYIDEAYKIV-KAESPNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDS-SIGFGAPVRANMRTGGL---------TDALVTSSLLESSGR*W*SCNIWPHS*IHWTDSDFNELVQPLNEDQLVQVLTDPINALGKQYKKMFTMINVQTAFY**CLAIGCQKKHGKKHWGSGAKNPIKKTILTKRAWLKIPAKPNMA 711
            D+D   AQ+GIVYIDE  KI  K+E+P+  RDVSGEGVQQALLK++EGTV +VP    G RKHP+ + + +DTK+ILFICGGAF GL+K I  R  D+  IGFGA V+++ R   +          D +    + E  GR                       ++ L+E  L+++LT+P NA+ KQ+KK+F M +V+  F    L+   +K   +K    G +  ++  +L      ++P++ N++
Sbjct:  172 DYDVEKAQQGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVP--PQGGRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQARSNDAGGIGFGAKVKSSERKQEVGKILAEVEPEDLIKFGLIPEFVGR-----------------LPVVATLEELDEPALIKILTEPKNAITKQFKKLFEMESVELEFRPDALSAIAKKALKRKTGARGLRTIVESVLLD--TMYELPSQENVS 396          
BLAST of EY735204 vs. ExPASy Swiss-Prot
Match: CLPX_SYNY3 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Synechocystis sp. (strain PCC 6803) GN=clpX PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.578e-32
Identity = 101/254 (39.76%), Postives = 135/254 (53.15%), Query Frame = 1
Query:    4 ADFDPFSAQRGIVYIDEAYKIV-KAESPNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVR--------ANMRTGGLTDALVTSSLL-ESSGR*W*SCNIWPHS*IHWTDSDFNELVQPLNEDQLVQVLTDPINALGKQYKKMFTMINVQTAFY**CLAIGCQKKHGKKHWGSGAKNPIKKTILTKRAWLKIPAKPNM--ALLARNM 729
            AD D   AQRGI+YIDE  KI  K+E+P+  RDVSGEGVQQALLKMLEGTV NVP    G RKHP  D I IDT +ILFICGGAFVGLEK I +R    S+GF  P          A++      D LV   L+ E  GR                       + PL+ED L+ +LT P NA+ KQY+ +  M +V+  F    +     + H +K      +  +++ +L      ++P++ ++   L+ R M
Sbjct:  191 ADLDVEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVP--PQGGRKHPYQDCIQIDTSNILFICGGAFVGLEKVIEQRFGKKSMGFVRPGEGPSKEKRTADVLRQAEPDDLVKFGLIPEFIGR-----------------IPVMACLNPLDEDALIAILTQPRNAIVKQYQTLLGMDHVELDFQPDAVRAIATEAHRRKTGARALRGIVEELMLD--VMYELPSREDLTHCLITREM 423          
BLAST of EY735204 vs. ExPASy Swiss-Prot
Match: CLPX_SHEAM (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=clpX PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.061e-32
Identity = 96/231 (41.56%), Postives = 126/231 (54.55%), Query Frame = 1
Query:    7 DFDPFSAQRGIVYIDEAYKIV-KAESPNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISER-RQDSSIGFGAPVRANMRTGGLTDA--------LVTSSLL-ESSGR*W*SCNIWPHS*IHWTDSDFNELVQPLNEDQLVQVLTDPINALGKQYKKMFTMINVQTAFY**CLAIGCQKKHGKKHWGSGAKNPIKKTIL 666
            D+D   AQRGIVYIDE  KI  K+++P+  RDVSGEGVQQALLK++EGTV  VP    G RKHP+ + + +DT  ILFICGGAF GLEK I +R    S IGFGA V+       ++D         LV   L+ E  GR                       +  L+ED L+Q+L++P NAL KQY  +F M NV+  F    L    QK   +K    G ++ ++  +L
Sbjct:  170 DYDVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVP--PQGGRKHPQQEFLQVDTSKILFICGGAFAGLEKVIEQRTHTGSGIGFGAQVKGKEEKESMSDILSQVEPEDLVKYGLIPEFIGR-----------------LPVVATLAELDEDALIQILSEPKNALTKQYAALFEMENVELEFREDALKAIAQKAMSRKTGARGLRSIVEGILL 381          
BLAST of EY735204 vs. ExPASy Swiss-Prot
Match: CLPX_NEIG1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=clpX PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.061e-32
Identity = 91/230 (39.57%), Postives = 126/230 (54.78%), Query Frame = 1
Query:    7 DFDPFSAQRGIVYIDEAYKIV-KAESPNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLT---------DALVTSSLLESSGR*W*SCNIWPHS*IHWTDSDFNELVQPLNEDQLVQVLTDPINALGKQYKKMFTMINVQTAFY**CLAIGCQKKHGKKHWGSGAKNPIKKTIL 666
            DFD   A+ GIVYIDE  KI  K+++P+  RDVSGEGVQQALLK++EGTV +VP    G RKHP  + I +DT +ILFICGGAF GLEK I +R +   IGFGA V +     G+T         D +    + E  GR                       ++ L+ED L+ +LT+P NAL KQY+ +F + NV   F    L    ++   +K    G ++ +++ +L
Sbjct:  170 DFDVEKARHGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVP--PQGGRKHPNQEFINVDTANILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENAGITKLFGIVEPEDLIKFGLIPELIGR-----------------LPVIATLEELDEDALINILTEPKNALVKQYQALFGIENVGLEFEEGALRSIARQAMERKTGARGLRSIVERCLL 380          
BLAST of EY735204 vs. ExPASy Swiss-Prot
Match: CLPX_XANOP (ATP-dependent Clp protease ATP-binding subunit clpX OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=clpX PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.692e-32
Identity = 92/246 (37.40%), Postives = 138/246 (56.10%), Query Frame = 1
Query:    7 DFDPFSAQRGIVYIDEAYKIV-KAESPNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDS-SIGFGAPVRANMRTGGL---------TDALVTSSLLESSGR*W*SCNIWPHS*IHWTDSDFNELVQPLNEDQLVQVLTDPINALGKQYKKMFTMINVQTAFY**CLAIGCQKKHGKKHWGSGAKNPIKKTILTKRAWLKIPAKPNMA 711
            D+D   AQ+GIVYIDE  KI  K+E+P+  RDVSGEGVQQALLK++EGTV +VP    G RKHP+ + + +DTK+ILFICGGAF GL+K I +R  D+  IGFG  V+++ R   +          D +    + E  GR                       ++ L+E  L+++LT+P NA+ KQ+KK+F M  V+  F    L+   +K   +K    G +  ++  +L      ++P++ N++
Sbjct:  172 DYDVEKAQQGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVP--PQGGRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQQRSNDAGGIGFGVKVKSSERKQEVGKILAEVEPEDLIKFGLIPEFVGR-----------------LPVVATLEELDEPALIKILTEPKNAITKQFKKLFDMEGVELEFRADALSAIAKKALKRKTGARGLRTIVESVLLD--TMYELPSQENVS 396          
BLAST of EY735204 vs. ExPASy Swiss-Prot
Match: CLPX_SYNP6 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpX PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.692e-32
Identity = 91/200 (45.50%), Postives = 113/200 (56.50%), Query Frame = 1
Query:    4 ADFDPFSAQRGIVYIDEAYKIV-KAESPNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAP---------VRANMRTGGLTDALVTSSLLESSGR*W*SCNIWPHS*IHWTDSDFNELVQPLNEDQLVQVLTDPINALGKQYKKMFTMINVQTAF 573
            AD D   AQRGI+YIDE  KI  K+E+P+  RDVSGEGVQQALLKMLEGT+ NVP    G RKHP  D I IDT++ILFICGGAFVGLEK +  R    SIGF  P           A +R     D +    + E  GR                      ++ PL+E  L ++LT+P +AL KQY+K+  M +V+  F
Sbjct:  195 ADLDIEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVP--PQGGRKHPYQDCIQIDTRNILFICGGAFVGLEKLVDRRLGKKSIGFVHPEESKTKEQRAAAILRHMEPEDLVQFGLIPEFIGR-----------------MPVTAVLDPLDETALTEILTEPRDALVKQYQKLMHMDSVELEF 375          
BLAST of EY735204 vs. ExPASy Swiss-Prot
Match: CLPX_SYNE7 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Synechococcus elongatus (strain PCC 7942) GN=clpX PE=3 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.692e-32
Identity = 91/200 (45.50%), Postives = 113/200 (56.50%), Query Frame = 1
Query:    4 ADFDPFSAQRGIVYIDEAYKIV-KAESPNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAP---------VRANMRTGGLTDALVTSSLLESSGR*W*SCNIWPHS*IHWTDSDFNELVQPLNEDQLVQVLTDPINALGKQYKKMFTMINVQTAF 573
            AD D   AQRGI+YIDE  KI  K+E+P+  RDVSGEGVQQALLKMLEGT+ NVP    G RKHP  D I IDT++ILFICGGAFVGLEK +  R    SIGF  P           A +R     D +    + E  GR                      ++ PL+E  L ++LT+P +AL KQY+K+  M +V+  F
Sbjct:  195 ADLDIEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVP--PQGGRKHPYQDCIQIDTRNILFICGGAFVGLEKLVDRRLGKKSIGFVHPEESKTKEQRAAAILRHMEPEDLVQFGLIPEFIGR-----------------MPVTAVLDPLDETALTEILTEPRDALVKQYQKLMHMDSVELEF 375          
BLAST of EY735204 vs. ExPASy Swiss-Prot
Match: CLPX_DIAST (ATP-dependent Clp protease ATP-binding subunit clpX OS=Diaphorobacter sp. (strain TPSY) GN=clpX PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.692e-32
Identity = 95/232 (40.95%), Postives = 129/232 (55.60%), Query Frame = 1
Query:    1 AADFDPFSAQRGIVYIDEAYKIV-KAESPNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDA--------LVTSSLL-ESSGR*W*SCNIWPHS*IHWTDSDFNELVQPLNEDQLVQVLTDPINALGKQYKKMFTMINVQTAFY**CLAIGCQKKHGKKHWGSGAKNPIKKTIL 666
            + ++D   AQRGIVYIDE  KI  K+++P+  RDVSGEGVQQALLK++EGT+ +VP    G RKHP  D + IDT +ILFICGGAF GLEK I  R + S IGFGA VR+  +   LT+         L+   L+ E  GR                       +  L+ED LVQ+LT+P NAL KQY K+  M  V+       L    +K   +K    G ++ +++ ++
Sbjct:  171 SCNYDVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVP--PQGGRKHPNQDFLQIDTTNILFICGGAFAGLEKVIENRTEASGIGFGAAVRSK-KQRSLTEVFQDIEPEDLIKFGLIPELVGR-----------------MPVVTALAELSEDALVQILTEPKNALVKQYSKLLAMEGVELEIRPAALKSIARKAIARKTGARGLRSILEQALI 382          
BLAST of EY735204 vs. ExPASy Swiss-Prot
Match: CLPX_DESPS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Desulfotalea psychrophila GN=clpX PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.692e-32
Identity = 93/230 (40.43%), Postives = 131/230 (56.96%), Query Frame = 1
Query:    1 AADFDPFSAQRGIVYIDEAYKIV-KAESPNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRT-GGLTDALVTSSLL------ESSGR*W*SCNIWPHS*IHWTDSDFNELVQPLNEDQLVQVLTDPINALGKQYKKMFTMINVQTAFY**CLAIGCQKKHGKKHWGSGAKNPIKKTIL 666
            AAD+D   AQRGI+YIDE  KI  K++S +  RDVSGEGVQQALLK++EGTV +VP    G RKHP+ + + IDT +ILFICGGAFVGL + +  R    SIGF A + A+ R+   L +A+    LL      E  GR                       ++ L+ED LV++L +P NAL +Q++K+F    V+  F    LA   +K   +K    G ++ +++ +L
Sbjct:  169 AADYDVEKAQRGIIYIDEIDKIARKSDSASLTRDVSGEGVQQALLKIIEGTVASVP--PKGGRKHPQQELVKIDTTNILFICGGAFVGLGRVVKRRAGKKSIGFSADLSADKRSESELLEAVRPEDLLKFGLIPELVGR-----------------LPVIASLRELSEDDLVRILREPKNALTRQFEKLFQFEGVKLTFTEGSLAAVAKKAIARKSGARGLRSVLEEAML 379          
BLAST of EY735204 vs. ExPASy Swiss-Prot
Match: CLPX_ACISJ (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acidovorax sp. (strain JS42) GN=clpX PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.692e-32
Identity = 95/232 (40.95%), Postives = 129/232 (55.60%), Query Frame = 1
Query:    1 AADFDPFSAQRGIVYIDEAYKIV-KAESPNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDA--------LVTSSLL-ESSGR*W*SCNIWPHS*IHWTDSDFNELVQPLNEDQLVQVLTDPINALGKQYKKMFTMINVQTAFY**CLAIGCQKKHGKKHWGSGAKNPIKKTIL 666
            + ++D   AQRGIVYIDE  KI  K+++P+  RDVSGEGVQQALLK++EGT+ +VP    G RKHP  D + IDT +ILFICGGAF GLEK I  R + S IGFGA VR+  +   LT+         L+   L+ E  GR                       +  L+ED LVQ+LT+P NAL KQY K+  M  V+       L    +K   +K    G ++ +++ ++
Sbjct:  171 SCNYDVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVP--PQGGRKHPNQDFLQIDTTNILFICGGAFAGLEKVIENRTEASGIGFGAAVRSK-KQRSLTEVFQDIEPEDLIKFGLIPELVGR-----------------MPVVTALAELSEDALVQILTEPKNALVKQYSKLLAMEGVELEIRPAALKSIARKAIARKTGARGLRSILEQALI 382          
The following BLAST results are available for this feature:
BLAST of EY735204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_XANC81.578e-3237.80ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SYNY31.578e-3239.76ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHEAM2.061e-3241.56ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_NEIG12.061e-3239.57ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_XANOP2.692e-3237.40ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SYNP62.692e-3245.50ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SYNE72.692e-3245.50ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_DIAST2.692e-3240.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_DESPS2.692e-3240.43ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACISJ2.692e-3240.95ATP-dependent Clp protease ATP-binding subunit clp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-102-H01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735204 ID=EY735204; Name=EY735204; organism=Citrus sinensis; type=EST; length=770bp
GCTGCTGATTTCGACCCCTTTTCAGCTCAGAGAGGGATCGTCTACATTGA
TGAAGCTTATAAGATAGTGAAGGCTGAGAGTCCAAACAATGGCAGAGATG
TATCGGGCGAGGGAGTCCAACAGGCATTACTGAAAATGCTAGAAGGAACT
GTAGTAAATGTTCCTATACCTGATAACGGACCTCGGAAGCATCCTCGTGG
TGATAACATTCCAATTGATACGAAAGATATCCTTTTCATATGTGGTGGTG
CCTTTGTTGGTTTGGAGAAGACAATTTCAGAGAGACGGCAAGATTCTTCT
ATTGGCTTTGGAGCACCAGTCCGTGCCAACATGAGAACTGGTGGATTGAC
TGATGCGCTTGTGACGTCATCATTGTTGGAATCATCAGGTAGATAGTGGT
GATCTTGTAACATATGGCCTCATTCCTGAATTCATTGGACGGATTCCGAT
TTTAATGAGCTTGTCCAGCCTTTAAATGAGGATCAACTTGTTCAGGTTCT
CACGGATCCCATAAATGCTCTTGGAAAACAGTACAAAAAGATGTTCACCA
TGATTAATGTCCAAACTGCCTTTTACTGATGATGCCTTGCGATTGGTTGC
CAAAAAAAGCATGGCAAAAAACACTGGGGCTCCGGGGCCAAGAACCCTAT
TAAAAAAACAATCCTCACAAAACGCGCATGGTTGAAAATTCCCGCAAAAC
CAAACATGGCACTTCTAGCTCGTAATATGCCTATTTGGTACAAATAAGGA
GGCGCTTATGGCTCATATTG
back to top