EY735183

Overview
NameEY735183
Unique NameEY735183
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.988e-58
Identity = 106/154 (68.83%), Postives = 127/154 (82.47%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTP 489
            MASS++S+A    A   + AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM VWPP G+KKFETLSYLPPLS+E+LLKE+ YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K  P
Sbjct:    1 MASSLMSNAATTMAAATTTAQANMVAPFNGLKSISAFPVTRK-NNDITSVASNGGRVQCM-VWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYP 152          
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.596e-58
Identity = 107/152 (70.39%), Postives = 127/152 (83.55%), Query Frame = 1
Query:   34 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTP 489
            +SM+S+A V    R + AQASMVAPFTGLKS SAFP TKK+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K  P
Sbjct:    2 ASMMSNAAVV--GRTTPAQASMVAPFTGLKSVSAFPVTKKSN-DITSIASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYP 150          
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.428e-58
Identity = 109/156 (69.87%), Postives = 126/156 (80.77%), Query Frame = 1
Query:   28 MASSMISSATVATANRASL--AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTP 489
            MASSM+S+A  A A  A+   AQA+MVAPF GLKS ++FP T+K+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLSD  LL ++ YL+  GWIPC+EFELE  +VYRE+H+SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K  P
Sbjct:    1 MASSMMSNAATAVAVAATSGGAQANMVAPFNGLKSIASFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYP 155          
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.783e-58
Identity = 102/147 (69.39%), Postives = 128/147 (87.07%), Query Frame = 1
Query:   49 SATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTP 489
            S+TVAT +RA+ AQA+MVAPFTGLKS++AFPATKK N D +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +K+ P
Sbjct:    5 SSTVATVSRAAPAQANMVAPFTGLKSNAAFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYP 150          
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.783e-58
Identity = 108/154 (70.13%), Postives = 126/154 (81.82%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTP 489
            MASS++S+A  A    AS AQA+MVAPF GLKS ++FP T+K+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLSD  LL ++ YL+ +GWIPC+EFELE  +VYRE+H+SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K  P
Sbjct:    1 MASSLMSNAITAVVG-ASGAQANMVAPFNGLKSIASFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNNGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYP 152          
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.683e-57
Identity = 106/166 (63.86%), Postives = 131/166 (78.92%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTPIHSSKLSNLKTK 525
            MASSM++S   A   RA  AQ+SMVAPF GL+SS AFPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF  E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K  P +  ++     K
Sbjct:    1 MASSMMAST--AAVARAGPAQSSMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNK 163          
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.683e-57
Identity = 107/154 (69.48%), Postives = 128/154 (83.12%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTP 489
            MASS    ++VATA RA+ AQASMVAPF GLKS+SAFP T+K    ++++ SNGGRVQCMKVWP  GLKKFETLSYLP LS E+LLK+I YLIR+GW+PCLEF LE G+V R+++KSPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +K+ P
Sbjct:    1 MASSATMLSSVATAARAAPAQASMVAPFVGLKSASAFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYP 153          
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.870e-57
Identity = 101/147 (68.71%), Postives = 127/147 (86.39%), Query Frame = 1
Query:   49 SATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTP 489
            S+TVAT +RA+ AQA+MVAPFTGLKS+ AFPATKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +K+ P
Sbjct:    5 SSTVATVSRAAPAQANMVAPFTGLKSNVAFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYP 150          
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.896e-57
Identity = 104/152 (68.42%), Postives = 128/152 (84.21%), Query Frame = 1
Query:   34 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTP 489
            +S++S+A V TA+ A  AQA+MVAPF+GLKS+SAFP ++K+N DITS+A+NGGRV CM+VWPP  LKKFETLSYLP LS+E+LLKEINYL+  GW+PCLEFE+    VYRE++KSPGYYDGRYWTMWKLPM+GCTDA+QV  EV E +   P
Sbjct:    2 ASLMSNAAVVTASTA--AQANMVAPFSGLKSTSAFPVSRKSNVDITSLATNGGRVNCMQVWPPRNLKKFETLSYLPTLSEESLLKEINYLLIKGWVPCLEFEVGPAHVYRENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAEVVECKNAYP 151          
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.091e-56
Identity = 106/154 (68.83%), Postives = 127/154 (82.47%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTP 489
            MASS    ++VATA   + AQASMVAPF GLKS+SAFP T+KT   ++++ SNGGRVQCMKVWP  GLKKFETLSYLP LS E+LLK+I YLIR+GW+PCLEF LE G+V R+++KSPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +K+ P
Sbjct:    1 MASSATMLSSVATAACVAPAQASMVAPFVGLKSASAFPVTQKTVTGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYP 153          
The following BLAST results are available for this feature:
BLAST of EY735183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
RBS5_MESCR1.988e-5868.83Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS2_MESCR2.596e-5870.39Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS2_AMAHP4.428e-5869.87Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS4_FLAPR5.783e-5869.39Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS3_AMAHP5.783e-5870.13Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS5_LEMGI1.683e-5763.86Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS3_FRIAG1.683e-5769.48Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_FLAPR2.870e-5768.71Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_SILPR4.896e-5768.42Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_FRIAG1.091e-5668.83Ribulose bisphosphate carboxylase small chain 2, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-102-E07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735183 ID=EY735183; Name=EY735183; organism=Citrus sinensis; type=EST; length=859bp
CAAAGCTAGAAGAAGGAGCAAGTACCAATGGCTTCCTCAATGATCTCATC
GGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGG
TCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAG
AAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCA
ATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCT
CATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAATTAC
CTTATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGG
ATGGGTGTACCGTGAGCACCACAAGTCACCAGGATACTACGATGGACGCT
ACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAG
GTTTTGAAGGAGGTTGGGGAGGTCCAAAAGGATACCCCCATTCATTCTTC
CAAATTATCGAATTTGAAAACAAAAGTAAGGGGCAGTGAAATCATTTTAT
TGGTTGCAAACACACAAGGCGTCTAAGGTACCCAATTAACTTGGGGCACC
CACCCATCCCACTATGTTGACTTATATTGTGCGGACCGCCCCTAAATGAG
CCTTCAACCAGTGGGGGACTCAGCCGTCCGACTCAATCCTCCCCATAACG
CCGCCACCGCCAGACCCACACCCCCCAGTCCAACAAGTACGCACTAAGAC
CTACTCATAAGTCACTCTATGCCCGAGAGCGAACTGTCACCGGTCCTGGC
GCCCACTCACGTCGTTGACGCACACCAACTCGCCACCAAACAATCACGCA
GGACAAACG
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