EY735183

Overview
NameEY735183
Unique NameEY735183
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.424e-56
Identity = 104/166 (62.65%), Postives = 129/166 (77.71%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTPIHSSKLSNLKTK 525
            MASSM++S   A   R   AQ +MVAPF GL+SS AFPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF  E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K  P +  ++     K
Sbjct:    1 MASSMMAST--AAVARVGPAQTNMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNK 163          
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.860e-56
Identity = 106/154 (68.83%), Postives = 127/154 (82.47%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTP 489
            MASS    ++VATA  A+ AQASMVAPF GLKS+SAFP T+KT   ++++ SNGGRVQCMKVWP  GLKKFETLSYLP LS E+LLK+I YLIR+GW+PCLEF LE G+V R+++KSPGYYDGRYWTMWKLPM+GCT A QV+KE  E +K+ P
Sbjct:    1 MASSATMLSSVATAACAAPAQASMVAPFVGLKSASAFPVTQKTATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTGAAQVVKEAAECKKEYP 153          
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.173e-56
Identity = 105/154 (68.18%), Postives = 127/154 (82.47%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTP 489
            MA+S    ++VATA  A+ AQASMVAPF GLKS+SAFP T+K    ++++ SNGGRVQCMKVWP  GLKKFETLSYLP LS E+LLK+I YLIR+GW+PCLEF LE G+V R+++KSPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +K+ P
Sbjct:    1 MAASSTMLSSVATAACAAPAQASMVAPFVGLKSTSAFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYP 153          
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.575e-55
Identity = 102/166 (61.45%), Postives = 130/166 (78.31%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTPIHSSKLSNLKTK 525
            MASSM++S   A   RA  AQ++MVAPF GL+SS AFPAT+K N +++++ SNGG+V CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF  E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K  P +  ++     K
Sbjct:    1 MASSMMAST--AAVARAGPAQSNMVAPFNGLRSSVAFPATRKANKNLSTLPSNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNK 163          
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 7.816e-55
Identity = 96/141 (68.09%), Postives = 122/141 (86.52%), Query Frame = 1
Query:   67 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTP 489
            A  A++AQA+MVAPFTGLKS++AFP TKK N D +++ASNGGRVQCMKVWPP G K++ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +K+ P
Sbjct:    6 ATVATVAQANMVAPFTGLKSNAAFPVTKKVN-DFSTLASNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYP 145          
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.741e-54
Identity = 95/141 (67.38%), Postives = 121/141 (85.82%), Query Frame = 1
Query:   67 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTP 489
            A  A++AQA+MVAPFTGLKS++AFP TKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +K+ P
Sbjct:    6 ATVATVAQANMVAPFTGLKSNAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTESQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYP 145          
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.274e-54
Identity = 95/141 (67.38%), Postives = 121/141 (85.82%), Query Frame = 1
Query:   67 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTP 489
            A  A++AQA+MVAPFTGLK+++AFP TKK N D +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +K+ P
Sbjct:    6 ATVATVAQANMVAPFTGLKANAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPDLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYP 145          
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS5_FLAPR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.970e-54
Identity = 95/141 (67.38%), Postives = 121/141 (85.82%), Query Frame = 1
Query:   67 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTP 489
            A  A++AQA+MVAPFTGLKS++AFP TKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +K+ P
Sbjct:    6 ATVATVAQANMVAPFTGLKSNAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYP 145          
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.879e-54
Identity = 102/166 (61.45%), Postives = 127/166 (76.51%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTPIHSSKLSNLKTK 525
            MASSM++S   A A RA  AQ +MV PF   +SS  FPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF  E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K  P +  ++     K
Sbjct:    1 MASSMMASTAAAVA-RAGPAQTNMV-PFNACRSSVPFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNK 163          
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS6_FLAPR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.129e-53
Identity = 94/141 (66.67%), Postives = 120/141 (85.11%), Query Frame = 1
Query:   67 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTP 489
            A  A++AQA+MVAPFTGLK+++AFP TKK N D +++ SNGGRVQCMKVWPP G KK+ TLSYLP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +K+ P
Sbjct:    6 ATVAAVAQANMVAPFTGLKANAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKKYXTLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSVQVMKELQECKKEYP 145          
The following BLAST results are available for this feature:
BLAST of EY735183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
RBS6_LEMGI1.424e-5662.65Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS5_FRIAG1.860e-5668.83Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS1_FRIAG3.173e-5668.18Ribulose bisphosphate carboxylase small chain 1/4,... [more]
RBS2_LEMGI1.575e-5561.45Ribulose bisphosphate carboxylase small chain SSU2... [more]
RBS7_FLAPR7.816e-5568.09Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS3_FLAPR1.741e-5467.38Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS1_FLAPR2.274e-5467.38Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS5_FLAPR2.970e-5467.38Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_LEMGI3.879e-5461.45Ribulose bisphosphate carboxylase small chain SSU4... [more]
RBS6_FLAPR1.129e-5366.67Ribulose bisphosphate carboxylase small chain 6, c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-102-E07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735183 ID=EY735183; Name=EY735183; organism=Citrus sinensis; type=EST; length=859bp
CAAAGCTAGAAGAAGGAGCAAGTACCAATGGCTTCCTCAATGATCTCATC
GGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGG
TCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAG
AAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCA
ATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCT
CATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAATTAC
CTTATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGG
ATGGGTGTACCGTGAGCACCACAAGTCACCAGGATACTACGATGGACGCT
ACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAG
GTTTTGAAGGAGGTTGGGGAGGTCCAAAAGGATACCCCCATTCATTCTTC
CAAATTATCGAATTTGAAAACAAAAGTAAGGGGCAGTGAAATCATTTTAT
TGGTTGCAAACACACAAGGCGTCTAAGGTACCCAATTAACTTGGGGCACC
CACCCATCCCACTATGTTGACTTATATTGTGCGGACCGCCCCTAAATGAG
CCTTCAACCAGTGGGGGACTCAGCCGTCCGACTCAATCCTCCCCATAACG
CCGCCACCGCCAGACCCACACCCCCCAGTCCAACAAGTACGCACTAAGAC
CTACTCATAAGTCACTCTATGCCCGAGAGCGAACTGTCACCGGTCCTGGC
GCCCACTCACGTCGTTGACGCACACCAACTCGCCACCAAACAATCACGCA
GGACAAACG
back to top