EY735183
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS3_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40A, chloroplastic OS=Lemna gibba GN=SSU40A PE=3 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 1.474e-53 Identity = 101/166 (60.84%), Postives = 127/166 (76.51%), Query Frame = 1 Query: 28 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTPIHSSKLSNLKTK 525 MASSM++S A A RA AQ+SMV PF +SS FPAT+K NN+++++ NGGRV CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K P + ++ K Sbjct: 1 MASSMMASTAAAVA-RAGPAQSSMV-PFNACRSSVPFPATRKANNNLSTLPGNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNK 163
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 1.248e-52 Identity = 92/141 (65.25%), Postives = 117/141 (82.98%), Query Frame = 1 Query: 67 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTP 489 A A++ Q +MVAPFTGLK+++AFP TKK N +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++ L KE++YL+R+ W+PCLEFELE G+VYRE+ SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +K+ P Sbjct: 6 ATVAAVPQTNMVAPFTGLKANAAFPVTKKVNG-FSTLPSNGGRVQCMKVWPPVGKKKYETLSYLPELTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYP 145
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2) HSP 1 Score: 206.068 bits (523), Expect = 2.128e-52 Identity = 97/162 (59.88%), Postives = 124/162 (76.54%), Query Frame = 1 Query: 40 MISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTPIHSSKLSNLKTK 525 M+S+A VA R AQ +MV F G +SS AFPAT+K NND++++ S+GGRV CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K P + ++ K Sbjct: 2 MVSTAAVA---RVRPAQTNMVGAFNGCRSSVAFPATRKANNDLSTLPSSGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENNASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNK 159
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 4.014e-51 Identity = 99/160 (61.88%), Postives = 125/160 (78.12%), Query Frame = 1 Query: 28 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTPIHSSKL 507 MASSM+ S A +R S AQ++MV PF GL SS+AFP T+K D + + SNG RV+CM+VWPP G KKFETLSYLPPL+ E L +E++YLIR+GWIPC+EF + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD++QVLKEV E K P + +++ Sbjct: 1 MASSMMVST--AAVSRTSPAQSNMVVPFAGLHSSAAFPVTRKFA-DSSKLPSNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGWIPCIEF-CKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSKAYPDYFNRI 156
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 3.757e-49 Identity = 88/135 (65.19%), Postives = 113/135 (83.70%), Query Frame = 1 Query: 85 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTP 489 + A+ VAPF GLKS++ P ++++N S+ SNGGR++CM+VWP G+KKFETLSYLPPLS EALLK+++YLIRS W+PCLEF + G+++REH+ SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+K+ P Sbjct: 8 SSATSVAPFQGLKSTAGLPVSRRSNASSASV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYP 140
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 1.093e-48 Identity = 88/135 (65.19%), Postives = 111/135 (82.22%), Query Frame = 1 Query: 85 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTP 489 + A+ VAPF GLKS++ P + ++ + S SNGGR++CM+VWP G+KKFETLSYLPPLS EALLK+++YLIRS W+PCLEF + G+V+REH+ SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+K+ P Sbjct: 8 SSATTVAPFQGLKSTAGLPISCRSGSTGLSSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYP 141
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2) HSP 1 Score: 192.971 bits (489), Expect = 1.865e-48 Identity = 87/135 (64.44%), Postives = 112/135 (82.96%), Query Frame = 1 Query: 85 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTP 489 + A+ VAPF GLKS++ P ++++ + S+ SNGGR++CM+VWP G+KKFETLSYLPPLS EAL K+++YLIRS W+PCLEF + G+V+REH+ SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+K+ P Sbjct: 8 SSATTVAPFQGLKSTAGLPVSRRSRGSLGSV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALSKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYP 140
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1) HSP 1 Score: 191.43 bits (485), Expect = 5.425e-48 Identity = 86/135 (63.70%), Postives = 108/135 (80.00%), Query Frame = 1 Query: 85 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTP 489 + A+ VAPF GLKS++ P +++ N SNGGR++CM+VWP G+KKFETLSYLPPL+ E LLK+I YL+RS W+PCLEF + G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K P Sbjct: 8 SSATTVAPFQGLKSTAGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYP 141
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2) HSP 1 Score: 191.43 bits (485), Expect = 5.425e-48 Identity = 86/135 (63.70%), Postives = 108/135 (80.00%), Query Frame = 1 Query: 85 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTP 489 + A+ VAPF GLKS++ P +++ N SNGGR++CM+VWP G+KKFETLSYLPPL+ E LLK+I YL+RS W+PCLEF + G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K P Sbjct: 8 SSATTVAPFQGLKSTAGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYP 141
BLAST of EY735183 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2) HSP 1 Score: 191.045 bits (484), Expect = 7.086e-48 Identity = 86/135 (63.70%), Postives = 109/135 (80.74%), Query Frame = 1 Query: 85 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKDTP 489 + A+ VAPF GLKS++ P ++++ N SNGGR++CM+VWP G+KKFETLSYLPPL+ E LLK+I YL+RS W+PCLEF + G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K P Sbjct: 8 SSATSVAPFQGLKSTAGLPVSRRSTNSGFGNVSNGGRIKCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYP 141 The following BLAST results are available for this feature:
BLAST of EY735183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 114
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Sequences
The
following sequences are available for this feature:
EST sequence >EY735183 ID=EY735183; Name=EY735183; organism=Citrus sinensis; type=EST; length=859bpback to top |