EY735032

Overview
NameEY735032
Unique NameEY735032
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY735032 vs. ExPASy Swiss-Prot
Match: CNG_ICTPU (Cyclic nucleotide-gated cation channel OS=Ictalurus punctatus PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.081e-11
Identity = 43/177 (24.29%), Postives = 85/177 (48.02%), Query Frame = 2
Query:   14 FSHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKM 544
            + +CF W    L+  G+ +       E  FV+   + G+++   ++GN+   +        E   R+  +  +M  +K++R+++ ++  +  Y+W    T+D +  L  LP +LR  I   + LD LK V+ F+  +  +L  L   ++P  Y    +I  +GD   EM  I +G++
Sbjct:  317 YVYCFYWSTLTLTTIGE-MPPPVKDEEYVFVVFDFLVGVLIFATIVGNVGSMIANMNATRAEFQTRIDAIKHYMHFRKVNRTLETRVIKWFDYLWTNKKTVDEQEVLKNLPDKLRAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLRPQVYSPGDYICRKGDIGKEMYIIKEGQL 492          
BLAST of EY735032 vs. ExPASy Swiss-Prot
Match: CNGA1_BOVIN (cGMP-gated cation channel alpha-1 OS=Bos taurus GN=CNGA1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.412e-11
Identity = 44/179 (24.58%), Postives = 85/179 (47.49%), Query Frame = 2
Query:    8 QKFSHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKM 544
            +K+ +   W    L+  G+      ++ E FFV+   + G+++   ++GNI   +        E   R+  + ++M  + +S+ +++++  +  Y+W    T+D    L  LP +LR  I   + LD LK V+ F   +  +L  L   ++P  Y    +I  +GD   EM  I +GK+
Sbjct:  345 RKYVYSLYWSTLTLTTIGETPPPVRDS-EYFFVVADFLIGVLIFATIVGNIGSMISNMNAARAEFQARIDAIKQYMHFRNVSKDMEKRVIKWFDYLWTNKKTVDEREVLKYLPDKLRAEIAINVHLDTLKKVRIFADCEAGLLVELVLKLQPQVYSPGDYICKKGDIGREMYIIKEGKL 522          
BLAST of EY735032 vs. ExPASy Swiss-Prot
Match: CNG_DROME (Cyclic nucleotide-gated cation channel OS=Drosophila melanogaster GN=Cng PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.409e-11
Identity = 42/179 (23.46%), Postives = 87/179 (48.60%), Query Frame = 2
Query:    8 QKFSHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKM 544
            +++ + F W    L+  G+   T  N  E  FV+   ++G+++   ++GNI   +        E   RM  + ++M  +++   ++ ++  +  Y W +   +D E  L+ LP +L+  I  ++ +D LK V+ F   +  +L+AL   +K   +    +I  +GD   EM  + +GK+
Sbjct:  297 RQYIYSFYWSTLTLTTIGET-PTPENDVEYLFVVADFLAGVLIFATIVGNIGSMISNMNVARVEFQNRMDGVKQYMAFRRVGHELEARVIRWFAYTWSQSGALDEERVLAALPDKLKAEIAIQVHMDTLKQVRIFHDTEPGLLEALVLKLKLQVFSPGDYICRKGDVGKEMYIVKRGKL 474          
BLAST of EY735032 vs. ExPASy Swiss-Prot
Match: CNGA1_HUMAN (cGMP-gated cation channel alpha-1 OS=Homo sapiens GN=CNGA1 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 4.109e-11
Identity = 43/179 (24.02%), Postives = 86/179 (48.04%), Query Frame = 2
Query:    8 QKFSHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKM 544
            +K+ +   W    L+  G+      ++ E  FV++  + G+++   ++GNI   +        E   R+  + ++M  + +S+ +++++  +  Y+W    T+D +  L  LP +LR  I   + LD LK V+ F   +  +L  L   ++P  Y    +I  +GD   EM  I +GK+
Sbjct:  347 RKYVYSLYWSTLTLTTIGETPPPVRDS-EYVFVVVDFLIGVLIFATIVGNIGSMISNMNAARAEFQARIDAIKQYMHFRNVSKDMEKRVIKWFDYLWTNKKTVDEKEVLKYLPDKLRAEIAINVHLDTLKKVRIFADCEAGLLVELVLKLQPQVYSPGDYICKKGDIGREMYIIKEGKL 524          
BLAST of EY735032 vs. ExPASy Swiss-Prot
Match: CNGA1_CANFA (cGMP-gated cation channel alpha-1 OS=Canis familiaris GN=CNGA1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.109e-11
Identity = 43/179 (24.02%), Postives = 86/179 (48.04%), Query Frame = 2
Query:    8 QKFSHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKM 544
            +K+ +   W    L+  G+      ++ E  FV++  + G+++   ++GNI   +        E   R+  + ++M  + +S+ +++++  +  Y+W    T+D +  L  LP +LR  I   + LD LK V+ F   +  +L  L   ++P  Y    +I  +GD   EM  I +GK+
Sbjct:  346 RKYVYSLYWSTLTLTTIGETPPPVRDS-EYVFVVVDFLIGVLIFATIVGNIGSMISNMNAARAEFQARIDAIKQYMHFRNVSKDMEKRVIKWFDYLWTNKKTVDEKEVLKYLPDKLRAEIAINVHLDTLKKVRIFADCEAGLLVELVLKLQPQVYSPGDYICKKGDIGREMYIIKEGKL 523          
BLAST of EY735032 vs. ExPASy Swiss-Prot
Match: CNGA1_MOUSE (cGMP-gated cation channel alpha-1 OS=Mus musculus GN=Cnga1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.153e-11
Identity = 43/179 (24.02%), Postives = 85/179 (47.49%), Query Frame = 2
Query:    8 QKFSHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKM 544
            +K+ +   W    L+  G+      ++ E  FV++  + G+++   ++GNI   +        E   R+  + ++M  + +S+ +++++  +  Y+W    T+D    L  LP +LR  I   + LD LK V+ F   +  +L  L   ++P  Y    +I  +GD   EM  I +GK+
Sbjct:  339 RKYVYSLYWSTLTLTTIGETPPPVLDS-EYIFVVVDFLIGVLIFATIVGNIGSMISNMNAARAEFQSRVDAIKQYMNFRNVSKDMEKRVIKWFDYLWTNKKTVDEREVLRYLPDKLRAEIAINVHLDTLKKVRIFADCEAGLLVELVLKLQPQVYSPGDYICKKGDIGREMYIIKEGKL 516          
The following BLAST results are available for this feature:
BLAST of EY735032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
CNG_ICTPU1.081e-1124.29Cyclic nucleotide-gated cation channel OS=Ictaluru... [more]
CNGA1_BOVIN1.412e-1124.58cGMP-gated cation channel alpha-1 OS=Bos taurus GN... [more]
CNG_DROME2.409e-1123.46Cyclic nucleotide-gated cation channel OS=Drosophi... [more]
CNGA1_HUMAN4.109e-1124.02cGMP-gated cation channel alpha-1 OS=Homo sapiens ... [more]
CNGA1_CANFA4.109e-1124.02cGMP-gated cation channel alpha-1 OS=Canis familia... [more]
CNGA1_MOUSE9.153e-1124.02cGMP-gated cation channel alpha-1 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-075-E08-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY735032 ID=EY735032; Name=EY735032; organism=Citrus sinensis; type=EST; length=866bp
TTTTCCACAGAAATTCTCACATTGTTTTCGATGGGGCCTGAGAAATCTCA
GTTGTTTTGGTCAGAACCTGCAAACAAGTAGCAATGCTTGGGAAAACTTC
TTTGTCATCTTGGTTACCATCTCTGGTTTGGTGTTGATGCTCTTTCTCAT
TGGAAATATACAGATATACCTGCAGACCAAAGCTACACGACCAAAGGAGA
TGACCTTGAGGATGCAAGAGATGAATGAGCACATGCCCATTCAAAAGCTC
TCTAGGTCTGTTCAACAGCAGCTTAAGATATATCAACGATACATATGGCG
AAAACCTGATACTATTGATGTAGAGAGTTCACTTAGTATTCTTCCCAAAG
AACTCAGAAGGAATATAAAGCGTGAACTGTGCTTAGACCTGCTAAAGAAT
GTAAAAGAGTTTAAAACATTAGACGAAGAAGTATTGGATGCACTTTGTGA
TTGTGTAAAGCCAGCTTTCTACTTCAAGCACACTCATATTGTCTTGGAGG
GAGACCCAATTTATGAGATGCTCTTCATTGTCCAAGGCAAAATGTGGATC
TATACCTCCAAGGAGAGAACGAATGGCTCTGCAAACACTAGTCATAGCAG
AGACAACAGTAAATTTATAAGCAGGAAGGATCACCTGGCAGATGGCGACT
TTTGGGGAGAAAAACTTGTTGCTTGGGTTCTACGTGAACGCTCTTTATCC
AATATTCCTATGTCAACCCAAAAGTGTCCAAGCGCTTAAAAATGGTTGAA
ACCTTTTGGTCTTATGGGCCCATGACCTGAAAACCTGTGTTCCTTTAACC
CCCAAGTTGGTTACCTCAATTGAATTTAAATTCAAATTTATTTTTGGGAA
AAAAATGCCCCTCCGA
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