EY734966

Overview
NameEY734966
Unique NameEY734966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY734966 vs. ExPASy Swiss-Prot
Match: AMYB_SECCE (Beta-amylase (Fragment) OS=Secale cereale GN=BMY1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.164e-14
Identity = 48/143 (33.57%), Postives = 75/143 (52.45%), Query Frame = 3 
Query:   60 SHAAELTAGYYNPSNQDGYAPVFEVLKKHSVTMKFVCAV--PSLQDQEALADPEGLSWQVLNLAWDRGLAVAGENALSCYDREGCMRVVEMAKPR-----NDPDRRHFSFFMYQQPSSLLQGIICFSDLGYFIKCMHGDIAGD 467
            SHAAE+TAGYYN  ++D Y P+  +L +H  ++ F CA    S Q  +A++ PE L  QV +  W  GL +A ENAL  YD      ++  A+P      +  + + F F   +  + LL+G   + +   F+  MH ++  D
Sbjct:    1 SHAAEVTAGYYNLHDRDDYRPIARMLTRHHASLNFTCAEMRDSEQSSQAMSAPEELVQQVWSAGWREGLNIACENALPRYDPTAYNTILRNARPHGINHSSPTEHKLFGFTYLRLSNQLLEG-QNYVNFKTFVDRMHANLPHD 142
The following BLAST results are available for this feature:
BLAST of EY734966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
AMYB_SECCE3.164e-1433.57Beta-amylase (Fragment) OS=Secale cereale GN=BMY1 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-108-G03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY734966 ID=EY734966; Name=EY734966; organism=Citrus sinensis; type=EST; length=889bp
CCACGCGTCCGAAGATTATTGTTAAGGTTCCTGGGGTTTATTGGTGGTAC
AAGACAGCCAGCCATGCTGCAGAGTTAACAGCAGGATACTATAATCCTTC
AAATCAGGATGGATATGCTCCAGTTTTTGAGGTTCTCAAGAAGCACTCAG
TTACAATGAAGTTTGTGTGTGCGGTTCCTAGCCTGCAGGATCAGGAAGCT
CTGGCTGACCCCGAAGGTTTGAGTTGGCAGGTTCTTAATTTGGCCTGGGA
TCGAGGATTGGCTGTAGCTGGTGAGAATGCACTTTCATGTTATGACAGAG
AAGGGTGCATGAGAGTAGTCGAGATGGCAAAGCCAAGAAATGATCCTGAT
CGCCGTCACTTCTCATTCTTTATGTATCAACAACCATCTTCTTTGCTTCA
GGGGATAATTTGCTTCTCAGATCTGGGTTATTTTATTAAATGCATGCACG
GAGATATCGCAGGCGATCTGCTGCCCTAATAGTTAAGTGTACGTTTACCT
CCCATCTANGGTATCAACAGTCACTGGACATTCTGGGTGAAGGGGTTGGC
GACATGAAGTGTATAGTTTCGGATGTGGGTGAAAAGACCACATGGATCCA
GGTTCTGTGGAAATCTCTGGTTTCGGTAGCTGGTACGTCATTGCTACGCA
GATCATATTTTCTAACTGCAAACAGTATCGGAGAATGTAAGAGATGGGTG
TGGGAAATAACCTCCATGATCCTATTTATGCTTTGGGTGGGATTATAGAA
AGGAAGAAAAAACTCTTGGAATTTTCCTATTCAGATAATTTGAAGGGAAA
AGGGAAAAAATTTTTTGCTCCTTTCCAGAAGAAGCCATTTGGCGGGAAAA
AAAAAGGGCCCGCTTTTTGAAAAAAGAAGCCCAGACGGT
back to top