EY734955

Overview
NameEY734955
Unique NameEY734955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY734955 vs. ExPASy Swiss-Prot
Match: ALP6_SCHPO (Spindle pole body component alp6 OS=Schizosaccharomyces pombe GN=alp6 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.376e-12
Identity = 53/186 (28.49%), Postives = 89/186 (47.85%), Query Frame = 3
Query:  159 KLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHWKHVERPLWGAWQ 716
            K LS+   H     V  AY  +   L+ L++E + L   L++IK+YLLL QGDF+   M+     L +  + +    L + L+ A+RS+ A+ +P             +LKR+            D+  LE     TG + F+L YKV  P++++I+     +Y  +F  L+  K +E  L  +W+
Sbjct:  468 KKLSYRDPHSLETVVDKAYTESINHLVYLMEEVFHLTDHLKAIKKYLLLGQGDFVDLLMESLGNSLDQPANTLFRHNLTASLESAIRSSNASYEP-----------EYVLKRL------------DARLLELSHGETGWDVFTLEYKVDSPINVIITPYCSRQYLKIFNFLWRLKRIEFALAHSWR 630          
BLAST of EY734955 vs. ExPASy Swiss-Prot
Match: GCP4_ARATH (Gamma-tubulin complex component 4 homolog OS=Arabidopsis thaliana GN=At3g53760 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.423e-11
Identity = 55/203 (27.09%), Postives = 90/203 (44.33%), Query Frame = 3
Query:  138 VPTSENSKL------LSFGSNHHY--LEC-VKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEK-LQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTS-SDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHWKHVERPLWGAW 713
            +P SE  K+      L   S  H    EC V      A+  L  L+  R DL G L+++K Y LL++GDF   F++ +R+ +     + T E  L     +A   T A  D     ++  +    +  R +    V  K S +   +L    S+ G +  +L Y V WP+ +  +++ L+KY  VF+ L   K  +  L  +W
Sbjct:  350 LPQSEADKIEAMLKDLKESSEFHKRSFECTVDSVRAIAASHLWQLVVVRADLNGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTGESDLMVPFQLAATKTIAEEDKYFSRVSLRMPSFGVTVRSSQADMVRSKVSLTGKANLTSDTSVDGWDAIALEYSVDWPMQLFFTQEVLSKYLKVFQYLIRLKRTQMELEKSW 552          
The following BLAST results are available for this feature:
BLAST of EY734955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ALP6_SCHPO6.376e-1228.49Spindle pole body component alp6 OS=Schizosaccharo... [more]
GCP4_ARATH2.423e-1127.09Gamma-tubulin complex component 4 homolog OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-108-E05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY734955 ID=EY734955; Name=EY734955; organism=Citrus sinensis; type=EST; length=871bp
CCACGCGTCCGCAGTGCTCAGGTTTTGTTTCTACCCACTATTCAATGTTA
CCGTGTTGCTTTCACAAAGGATTGTTTTTGTTCTCCTTTTCTCCTTGTGA
TTGCATTAGTACTTGTTGATGGGAGCATTATTGATAGGTCCCTACTTCAG
AGAATTCAAAGTTATTGAGTTTTGGCTCTAACCATCATTATCTGGAGTGT
GTAAAAGTTGCATATGAATTTGCCAGTGGTGAGCTCTTAAATCTTATCAA
AGAAAGGTATGATCTAATGGGAAAGCTACGGTCTATAAAGCGTTATCTAC
TTCTCGATCAGGGTGATTTTTTGGTTCATTTTATGGATATAGCTCGTGAG
GAACTCATGAAACAGCTTGATGAGATTACTGTGGAAAAACTGCAGTCTCT
GCTAGACATTGCTCTGCGTTCCACTGCTGCAGCAGCAGATCCTTGTCATG
AGGACCTAACATGTTCTGTCGAGAGATCATCCTTGCTTAAAAGAATGGCC
ACACTCAAAGGTGTTGAAATTAAGACTTCCTCTGATAGCGTGGATTTAGA
GCAGCCAGTGAGCATTACTGGTCTTGAGACGTTTTCTTTAAGCTACAAGG
TCCAGTGGCCATTATCTATTGTTATATCAAGAAAAGCCCTAACCAAGTAT
CAGATGGTGTTTCGCTTACTTTTTCACTGGAAACATGTAGAGCGCCCCCT
GTGGGGGGCTTGGCAAGTGCACCAAGGAAGCTCGTGCCTTTTACGCAAAG
GGAACTGCTAATCTCTAAATCATCTCTGCTCCGCGGCAGCAAGCTTAAGG
TTATTAATAGCCCTTCTTCATTATTTGACATTTTGAAATTCTTGGAACCA
ATTGGCATGGGAAGGCGTAAA
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