EY734859

Overview
NameEY734859
Unique NameEY734859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: CALM_YEAST (Calmodulin OS=Saccharomyces cerevisiae GN=CMD1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.573e-21
Identity = 38/73 (52.05%), Postives = 53/73 (72.60%), Query Frame = 1
Query:   88 LTDYISSYIREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARNM 306
            LT+   +  +EAF LFDKD +G I++ EL TVMRSLG +P+EAE+ D++ E D DGN  I+F +FL LM+R +
Sbjct:    5 LTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMSRQL 77          

HSP 2 Score: 44.2838 bits (103), Expect = 5.573e-21
Identity = 21/48 (43.75%), Postives = 32/48 (66.67%), Query Frame = 2
Query:  317 DSQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGE 460
            DS+ EL EAF+V   +  G ISA E++  +T +G +L D EV+D++ E
Sbjct:   81 DSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLRE 128          
BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: CALM_KLULA (Calmodulin OS=Kluyveromyces lactis GN=CMD1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.077e-20
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 1
Query:   88 LTDYISSYIREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARNM 306
            LT+   +  +EAF LFDKD  G I+  EL TVMRSLG +P+EAE+ D++ E D DGN  I+F +FL LM+R +
Sbjct:    5 LTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMSRQL 77          

HSP 2 Score: 42.743 bits (99), Expect = 2.077e-20
Identity = 20/48 (41.67%), Postives = 32/48 (66.67%), Query Frame = 2
Query:  317 DSQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGE 460
            DS+ EL EAF+V   +  G ISA E++  +T +G +L D EV++++ E
Sbjct:   81 DSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLRE 128          
BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: TNNC2_RANES (Troponin C, skeletal muscle OS=Rana esculenta PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.200e-19
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   88 LTDYISSYIREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARNM 306
            L++ + +  + AF +FD DG G I+T+ELGTVMR LGQ PT+ EL  +I E D DG+GTIDF +FL +M R M
Sbjct:   14 LSEEMIAEFKAAFDMFDTDGGGDISTKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQM 86          

HSP 2 Score: 36.965 bits (84), Expect = 2.200e-19
Identity = 16/49 (32.65%), Postives = 30/49 (61.22%), Query Frame = 2
Query:  320 SQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGEGE 466
            S++EL E FR+   +  G+I + E+   +   G  + DEE+E+L+ +G+
Sbjct:   94 SEEELAECFRIFDKNADGYIDSEELGEILRSSGESITDEEIEELMKDGD 142          
BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: CML6_ORYSJ (Putative calmodulin-like protein 6 OS=Oryza sativa subsp. japonica GN=CML6 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.855e-19
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 1
Query:  106 SYIREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARNM 306
            S  R+AF LFDK+ DGCI+ EEL TV+  LG  P++ +L D+I   D DGNGTI+F +FL +M + +
Sbjct:   11 SDFRDAFSLFDKNNDGCISREELATVLTRLGMAPSQEDLQDMIVAVDEDGNGTIEFDEFLAIMKKKL 77          

HSP 2 Score: 41.9726 bits (97), Expect = 2.855e-19
Identity = 18/46 (39.13%), Postives = 31/46 (67.39%), Query Frame = 2
Query:  317 DSQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLI 454
            D ++ELR+AFR+   D  GFIS  E+   M  +G E+ ++E++D++
Sbjct:   84 DDEEELRKAFRIFDKDDNGFISRNELSMVMASLGEEMTEDEIDDMM 129          
BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: TNNC2_MELGA (Troponin C, skeletal muscle OS=Meleagris gallopavo GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 6.295e-19
Identity = 40/73 (54.79%), Postives = 53/73 (72.60%), Query Frame = 1
Query:   88 LTDYISSYIREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARNM 306
            L++ + +  + AF +FD DG G I+T+ELGTVMR LGQNPT+ EL  +I E D DG+GTIDF +FL +M R M
Sbjct:   14 LSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQM 86          

HSP 2 Score: 33.113 bits (74), Expect = 6.295e-19
Identity = 15/49 (30.61%), Postives = 27/49 (55.10%), Query Frame = 2
Query:  320 SQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGEGE 466
            S++EL   FR+   +  GFI   E+   +   G  + +EE+EDL+ + +
Sbjct:   94 SEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEEIEDLMKDSD 142          
BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: CML10_ARATH (Calmodulin-like protein 10 OS=Arabidopsis thaliana GN=CML10 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.056e-18
Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 1
Query:  106 SYIREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARN 303
            S  RE F ++DK+GDG ITTEE G VMRSLG N T+AEL + I ++D DG+GTI+F +FL  MA++
Sbjct:   11 SEFREQFSVYDKNGDGHITTEEFGAVMRSLGLNLTQAELQEEINDSDLDGDGTINFTEFLCAMAKD 76          

HSP 2 Score: 38.1206 bits (87), Expect = 1.056e-18
Identity = 18/52 (34.62%), Postives = 33/52 (63.46%), Query Frame = 2
Query:  320 SQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGEGEAPG 475
            S+ +L++ FR+  +D+ GFISA E+R   T +  +  DEE++++I   +  G
Sbjct:   79 SEKDLKKDFRLFDIDKNGFISAAEMRYVRTILRWKQTDEEIDEIIKAADVDG 130          
BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: TNNC2_CHICK (Troponin C, skeletal muscle OS=Gallus gallus GN=TNNC2 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.065e-18
Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = 1
Query:   55 MVSVPNKLAVA---LTDYISSYIREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARNM 306
            M S+ ++ A A   L++ + +  + AF +FD DG G I+T+ELGTVMR LGQNPT+ EL  +I E D DG+GTIDF +FL +M R M
Sbjct:    1 MASMTDQQAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQM 87          

HSP 2 Score: 31.9574 bits (71), Expect = 1.065e-18
Identity = 14/49 (28.57%), Postives = 27/49 (55.10%), Query Frame = 2
Query:  320 SQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGEGE 466
            S++EL   FR+   +  GFI   E+   +   G  + +E++EDL+ + +
Sbjct:   95 SEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSD 143          
BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: TNNC2_ANGAN (Troponin C, skeletal muscle OS=Anguilla anguilla PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.386e-18
Identity = 39/80 (48.75%), Postives = 55/80 (68.75%), Query Frame = 1
Query:   88 LTDYISSYIREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARNMGDTRLSR 327
            L++ + +  + AF +FD DG G I+T+ELGTVMR LGQNPT  EL  +I E D DG+GTIDF +FL +M R + + +  +
Sbjct:   12 LSEEMIAEFKAAFDMFDTDGGGDISTKELGTVMRMLGQNPTREELDAIIEEVDEDGSGTIDFEEFLVMMVRQLKEDQAGK 91          

HSP 2 Score: 33.113 bits (74), Expect = 1.386e-18
Identity = 16/49 (32.65%), Postives = 28/49 (57.14%), Query Frame = 2
Query:  320 SQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGEGE 466
            S++EL E FRV   +  GFI   E    +   G  + +EE+++L+ +G+
Sbjct:   92 SEEELAEFFRVFDKNGDGFIDREEFGEILRSSGEPVSEEEIDELMADGD 140          
BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: TNNC2_RABIT (Troponin C, skeletal muscle OS=Oryctolagus cuniculus GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.386e-18
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 1
Query:   88 LTDYISSYIREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARNM 306
            L++ + +  + AF +FD DG G I+ +ELGTVMR LGQ PT+ EL  +I E D DG+GTIDF +FL +M R M
Sbjct:   12 LSEEMIAEFKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQM 84          

HSP 2 Score: 36.1946 bits (82), Expect = 1.386e-18
Identity = 17/49 (34.69%), Postives = 28/49 (57.14%), Query Frame = 2
Query:  320 SQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGEGE 466
            S++EL E FR+   +  G+I A E+       G  + DEE+E L+ +G+
Sbjct:   92 SEEELAECFRIFDRNADGYIDAEELAEIFRASGEHVTDEEIESLMKDGD 140          
BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: TNNC2_PIG (Troponin C, skeletal muscle OS=Sus scrofa GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.345e-18
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 1
Query:   88 LTDYISSYIREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARNM 306
            L++ + +  + AF +FD DG G I+ +ELGTVMR LGQ PT+ EL  +I E D DG+GTIDF +FL +M R M
Sbjct:   11 LSEEMIAEFKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQM 83          

HSP 2 Score: 35.4242 bits (80), Expect = 2.345e-18
Identity = 16/49 (32.65%), Postives = 28/49 (57.14%), Query Frame = 2
Query:  320 SQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGEGE 466
            S++EL E FR+   +  G+I A E+       G  + DEE+E ++ +G+
Sbjct:   91 SEEELAECFRIFDRNMDGYIDAEELAEIFRASGEHVTDEEIESIMKDGD 139          
The following BLAST results are available for this feature:
BLAST of EY734859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 183
Match NameE-valueIdentityDescription
CALM_YEAST5.573e-2152.05Calmodulin OS=Saccharomyces cerevisiae GN=CMD1 PE=... [more]
CALM_KLULA2.077e-2052.05Calmodulin OS=Kluyveromyces lactis GN=CMD1 PE=3 SV... [more]
TNNC2_RANES2.200e-1953.42Troponin C, skeletal muscle OS=Rana esculenta PE=1... [more]
CML6_ORYSJ2.855e-1950.75Putative calmodulin-like protein 6 OS=Oryza sativa... [more]
TNNC2_MELGA6.295e-1954.79Troponin C, skeletal muscle OS=Meleagris gallopavo... [more]
CML10_ARATH1.056e-1857.58Calmodulin-like protein 10 OS=Arabidopsis thaliana... [more]
TNNC2_CHICK1.065e-1850.57Troponin C, skeletal muscle OS=Gallus gallus GN=TN... [more]
TNNC2_ANGAN1.386e-1848.75Troponin C, skeletal muscle OS=Anguilla anguilla P... [more]
TNNC2_RABIT1.386e-1852.05Troponin C, skeletal muscle OS=Oryctolagus cunicul... [more]
TNNC2_PIG2.345e-1852.05Troponin C, skeletal muscle OS=Sus scrofa GN=TNNC2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-099-A05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY734859 ID=EY734859; Name=EY734859; organism=Citrus sinensis; type=EST; length=920bp
CCACGCGTCCGCTCTCTCTCCATTTGATTTTGCGGGGCCTTTATTTCCGA
CTTTATGGTGTCTGTCCCAAACAAGTTGGCCGTAGCTCTCACCGACTATA
TTAGCTCCTACATCAGGGAAGCCTTCGGCTTGTTCGACAAGGACGGCGAC
GGTTGCATTACCACCGAGGAGCTTGGCACTGTTATGAGGTCACTGGGTCA
GAACCCCACTGAGGCTGAGCTGGGGGACGTGATCTATGAGGCGGATGCTG
ATGGCAATGGAACTATTGATTTTCCTGATTTCCTAAAGCTCATGGCCAGG
AATATGGGGGATACCCGACTCTCAAGATGAGCTGAGGGAGGCCTTCCGGG
TTTCCCACCTGGATCGCATTGGTTTCATCTCCGCTGTAGAAGTGCGGCGT
GAGATGACAAAGGTTGGGGCGGAGCTTCCTGATGAGGAAGTCGAAGACCT
GATAGGGGAAGGGGAAGCCCCGGGTGCGCGCCCCATAGAGTAGACGGCCC
TGCGCCGACCCCCGGGGCGGGTCAGCACGTCGGCTGCCCCGCCGGCCCCT
CCTCCGCGGACCCCCCACCTAGATGCCGTGAAACGGCGAAAGACGGGCGG
CCCGCCCCCCCCCCCGCCCGACAGGCCAGCAGGCGGGCGGCGCCCCAAAA
GGCGGCCGGCCCCCGCGCGCCGGTAGGGAACGCCGCGTCAAGGGAAGGGC
GGCGCCGCGCGAGCAGGAAACGACCGACGGGAGACCACCCGTCGCGGGAG
CCGCACGGACGCGCGGGCGCGCGACGCGAGGCAGGGGATTCCTATCAGGA
AAGCGACAGTGCGCGACAGGGTGGGGGCGCACGGCACGGCACAGAGCGGG
AGGGGCATCGACGCGTCCAGGGAAGACGGCGCCCGCCGGCCGCGGGCGGG
CGCATCGCGCGCACTCGAGC
back to top