EY734859

Overview
NameEY734859
Unique NameEY734859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: CML12_ORYSJ (Probable calcium-binding protein CML12 OS=Oryza sativa subsp. japonica GN=CML12 PE=2 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 1.186e-11
Identity = 27/63 (42.86%), Postives = 37/63 (58.73%), Query Frame = 1
Query:  112 IREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEA-ELGDVIYEADADGNGTIDFPDFLKLMA 297
            + E F  FD DGDG +T  EL  ++RSLG  P    E+  +I   DADGNGT++F +    +A
Sbjct:   96 LHEIFLRFDLDGDGSLTKLELAALLRSLGLRPAAGDEIHALIAAIDADGNGTVEFDELASSLA 158          

HSP 2 Score: 39.6614 bits (91), Expect = 1.186e-11
Identity = 21/51 (41.18%), Postives = 29/51 (56.86%), Query Frame = 2
Query:  323 QDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGEGEAPG 475
            Q EL EAFR    D  GFISA E+ R M ++G  +   E+ D++ E +  G
Sbjct:  173 QAELAEAFRAFDRDGNGFISAAELARSMARMGHPICYAELTDMMREADTDG 223          
BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: CALM4_MOUSE (Calmodulin-4 OS=Mus musculus GN=Calm4 PE=2 SV=2)

HSP 1 Score: 56.6102 bits (135), Expect = 1.593e-11
Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 1
Query:  121 AFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFL 285
            AF  FDK+ DG I+ EELG VM+ LG+N  E +L  +I + D DG+G I F +FL
Sbjct:   16 AFNRFDKNKDGHISVEELGDVMKQLGKNLPEKDLKALISKLDTDGDGKISFEEFL 70          

HSP 2 Score: 34.6538 bits (78), Expect = 1.593e-11
Identity = 16/42 (38.10%), Postives = 26/42 (61.90%), Query Frame = 2
Query:  329 ELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLI 454
            ELR  F V   +  G+I+  E++  ++K+G  L  EE+ED+I
Sbjct:   84 ELRAVFNVLDQNGDGYITVDELKESLSKLGESLSQEELEDMI 125          
BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: DYL3_CHLRE (Dynein 18 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.442e-11
Identity = 36/89 (40.45%), Postives = 55/89 (61.80%), Query Frame = 1
Query:   37 AFISDFMVSVPNKLAVALTDYISSYIREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARN 303
            A +  F  ++PN     LTD      R+AF +FDKDG G I T+EL T + +LGQNPTE ++  +I + D DG+  I+F +F++++  N
Sbjct:    3 AKVDIFAANLPN-----LTDEEMDMCRKAFAMFDKDGSGTIDTKELRTALSALGQNPTEEDMFVMISQVDQDGSRCIEFKEFVRVIQIN 86          
The following BLAST results are available for this feature:
BLAST of EY734859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 183
Match NameE-valueIdentityDescription
CML12_ORYSJ1.186e-1142.86Probable calcium-binding protein CML12 OS=Oryza sa... [more]
CALM4_MOUSE1.593e-1150.91Calmodulin-4 OS=Mus musculus GN=Calm4 PE=2 SV=2[more]
DYL3_CHLRE3.442e-1140.45Dynein 18 kDa light chain, flagellar outer arm OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-099-A05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY734859 ID=EY734859; Name=EY734859; organism=Citrus sinensis; type=EST; length=920bp
CCACGCGTCCGCTCTCTCTCCATTTGATTTTGCGGGGCCTTTATTTCCGA
CTTTATGGTGTCTGTCCCAAACAAGTTGGCCGTAGCTCTCACCGACTATA
TTAGCTCCTACATCAGGGAAGCCTTCGGCTTGTTCGACAAGGACGGCGAC
GGTTGCATTACCACCGAGGAGCTTGGCACTGTTATGAGGTCACTGGGTCA
GAACCCCACTGAGGCTGAGCTGGGGGACGTGATCTATGAGGCGGATGCTG
ATGGCAATGGAACTATTGATTTTCCTGATTTCCTAAAGCTCATGGCCAGG
AATATGGGGGATACCCGACTCTCAAGATGAGCTGAGGGAGGCCTTCCGGG
TTTCCCACCTGGATCGCATTGGTTTCATCTCCGCTGTAGAAGTGCGGCGT
GAGATGACAAAGGTTGGGGCGGAGCTTCCTGATGAGGAAGTCGAAGACCT
GATAGGGGAAGGGGAAGCCCCGGGTGCGCGCCCCATAGAGTAGACGGCCC
TGCGCCGACCCCCGGGGCGGGTCAGCACGTCGGCTGCCCCGCCGGCCCCT
CCTCCGCGGACCCCCCACCTAGATGCCGTGAAACGGCGAAAGACGGGCGG
CCCGCCCCCCCCCCCGCCCGACAGGCCAGCAGGCGGGCGGCGCCCCAAAA
GGCGGCCGGCCCCCGCGCGCCGGTAGGGAACGCCGCGTCAAGGGAAGGGC
GGCGCCGCGCGAGCAGGAAACGACCGACGGGAGACCACCCGTCGCGGGAG
CCGCACGGACGCGCGGGCGCGCGACGCGAGGCAGGGGATTCCTATCAGGA
AAGCGACAGTGCGCGACAGGGTGGGGGCGCACGGCACGGCACAGAGCGGG
AGGGGCATCGACGCGTCCAGGGAAGACGGCGCCCGCCGGCCGCGGGCGGG
CGCATCGCGCGCACTCGAGC
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