EY734859 | Citrus Genome Database

Overview


Name	EY734859
Unique Name	EY734859
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	920

Libraries


Library Name	Type
Sweet orange fruit, development stadium (5 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: CALM2_BRALA (Calmodulin-2 OS=Branchiostoma lanceolatum GN=CAM2 PE=2 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 2.033e-35
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 1

Query:   76 LAVALTDYISSYIREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARNMGDT 315
            +A  LT+   +  +EAF LFDKDGDG ITT+ELGTVMRSLGQNPTEAEL D+I E DADGNGTIDFP+FL +MAR M DT
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDT 80

HSP 2 Score: 57.3806 bits (137), Expect = 2.033e-35
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 2

Query:  317 DSQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGEGEAPG 475
            DS++E+REAFRV   D  GFISA E+R  MT +G +L DEEV++++ E +  G
Sbjct:   81 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMVREADIDG 133

BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: CALM_STRIE (Calmodulin OS=Strongylocentrotus intermedius PE=2 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 2.641e-35
Identity = 56/76 (73.68%), Postives = 63/76 (82.89%), Query Frame = 1

Query:   88 LTDYISSYIREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARNMGDT 315
            LT+   +  +EAF LFDKDGDG ITT+ELGTVMRSLGQNPTEAEL D+I E DADGNGTIDFP+FL +MAR M DT
Sbjct:   12 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDT 87

HSP 2 Score: 57.7658 bits (138), Expect = 2.641e-35
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 2

Query:  317 DSQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGEGEAPG 475
            DS++E+REAFRV   D  GFISA E+R  MT +G +L DEEV+++I E +  G
Sbjct:   88 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 140

BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: CALM_XENLA (Calmodulin OS=Xenopus laevis GN=calm1 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 3.449e-35
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 1

Query:   76 LAVALTDYISSYIREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARNMGDT 315
            +A  LT+   +  +EAF LFDKDGDG ITT+ELGTVMRSLGQNPTEAEL D+I E DADGNGTIDFP+FL +MAR M DT
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDT 80

HSP 2 Score: 56.6102 bits (135), Expect = 3.449e-35
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 2

Query:  317 DSQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGEGEAPG 475
            DS++E+REAFRV   D  G+ISA E+R  MT +G +L DEEV+++I E +  G
Sbjct:   81 DSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 133

BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: CALM_TORCA (Calmodulin OS=Torpedo californica PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 3.449e-35
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 1

Query:   76 LAVALTDYISSYIREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARNMGDT 315
            +A  LT+   +  +EAF LFDKDGDG ITT+ELGTVMRSLGQNPTEAEL D+I E DADGNGTIDFP+FL +MAR M DT
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDT 80

HSP 2 Score: 56.6102 bits (135), Expect = 3.449e-35
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 2

Query:  317 DSQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGEGEAPG 475
            DS++E+REAFRV   D  G+ISA E+R  MT +G +L DEEV+++I E +  G
Sbjct:   81 DSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 133

BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: CALM_STIJA (Calmodulin OS=Stichopus japonicus PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 3.449e-35
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 1

Query:   76 LAVALTDYISSYIREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARNMGDT 315
            +A  LT+   +  +EAF LFDKDGDG ITT+ELGTVMRSLGQNPTEAEL D+I E DADGNGTIDFP+FL +MAR M DT
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDT 80

HSP 2 Score: 56.6102 bits (135), Expect = 3.449e-35
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 2

Query:  317 DSQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGEGEAPG 475
            DS++E+REAFRV   D  G+ISA E+R  MT +G +L DEEV+++I E +  G
Sbjct:   81 DSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 133

BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: CALM_SHEEP (Calmodulin OS=Ovis aries GN=CALM2 PE=2 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 3.449e-35
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 1

Query:   76 LAVALTDYISSYIREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARNMGDT 315
            +A  LT+   +  +EAF LFDKDGDG ITT+ELGTVMRSLGQNPTEAEL D+I E DADGNGTIDFP+FL +MAR M DT
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDT 80

HSP 2 Score: 56.6102 bits (135), Expect = 3.449e-35
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 2

Query:  317 DSQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGEGEAPG 475
            DS++E+REAFRV   D  G+ISA E+R  MT +G +L DEEV+++I E +  G
Sbjct:   81 DSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 133

BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: CALM_RAT (Calmodulin OS=Rattus norvegicus GN=Calm1 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 3.449e-35
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 1

Query:   76 LAVALTDYISSYIREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARNMGDT 315
            +A  LT+   +  +EAF LFDKDGDG ITT+ELGTVMRSLGQNPTEAEL D+I E DADGNGTIDFP+FL +MAR M DT
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDT 80

HSP 2 Score: 56.6102 bits (135), Expect = 3.449e-35
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 2

Query:  317 DSQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGEGEAPG 475
            DS++E+REAFRV   D  G+ISA E+R  MT +G +L DEEV+++I E +  G
Sbjct:   81 DSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 133

BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: CALM_RABIT (Calmodulin OS=Oryctolagus cuniculus GN=CALM PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 3.449e-35
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 1

Query:   76 LAVALTDYISSYIREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARNMGDT 315
            +A  LT+   +  +EAF LFDKDGDG ITT+ELGTVMRSLGQNPTEAEL D+I E DADGNGTIDFP+FL +MAR M DT
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDT 80

HSP 2 Score: 56.6102 bits (135), Expect = 3.449e-35
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 2

Query:  317 DSQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGEGEAPG 475
            DS++E+REAFRV   D  G+ISA E+R  MT +G +L DEEV+++I E +  G
Sbjct:   81 DSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 133

BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: CALM_PONAB (Calmodulin OS=Pongo abelii GN=CALM PE=2 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 3.449e-35
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 1

Query:   76 LAVALTDYISSYIREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARNMGDT 315
            +A  LT+   +  +EAF LFDKDGDG ITT+ELGTVMRSLGQNPTEAEL D+I E DADGNGTIDFP+FL +MAR M DT
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDT 80

HSP 2 Score: 56.6102 bits (135), Expect = 3.449e-35
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 2

Query:  317 DSQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGEGEAPG 475
            DS++E+REAFRV   D  G+ISA E+R  MT +G +L DEEV+++I E +  G
Sbjct:   81 DSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 133

BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: CALM_PERFV (Calmodulin OS=Perca flavescens GN=calm PE=2 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 3.449e-35
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 1

Query:   76 LAVALTDYISSYIREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARNMGDT 315
            +A  LT+   +  +EAF LFDKDGDG ITT+ELGTVMRSLGQNPTEAEL D+I E DADGNGTIDFP+FL +MAR M DT
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDT 80

HSP 2 Score: 56.6102 bits (135), Expect = 3.449e-35
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 2

Query:  317 DSQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGEGEAPG 475
            DS++E+REAFRV   D  G+ISA E+R  MT +G +L DEEV+++I E +  G
Sbjct:   81 DSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 133

The following BLAST results are available for this feature:

BLAST of EY734859 vs. ExPASy Swiss-Prot

BLAST of EY734859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 183


Match Name	E-value	Identity	Description
CALM2_BRALA	2.033e-35	71.25	Calmodulin-2 OS=Branchiostoma lanceolatum GN=CAM2 ...	[more]
CALM_STRIE	2.641e-35	73.68	Calmodulin OS=Strongylocentrotus intermedius PE=2 ...	[more]
CALM_XENLA	3.449e-35	71.25	Calmodulin OS=Xenopus laevis GN=calm1 PE=1 SV=2	[more]
CALM_TORCA	3.449e-35	71.25	Calmodulin OS=Torpedo californica PE=1 SV=2	[more]
CALM_STIJA	3.449e-35	71.25	Calmodulin OS=Stichopus japonicus PE=1 SV=2	[more]
CALM_SHEEP	3.449e-35	71.25	Calmodulin OS=Ovis aries GN=CALM2 PE=2 SV=3	[more]
CALM_RAT	3.449e-35	71.25	Calmodulin OS=Rattus norvegicus GN=Calm1 PE=1 SV=2	[more]
CALM_RABIT	3.449e-35	71.25	Calmodulin OS=Oryctolagus cuniculus GN=CALM PE=1 S...	[more]
CALM_PONAB	3.449e-35	71.25	Calmodulin OS=Pongo abelii GN=CALM PE=2 SV=3	[more]
CALM_PERFV	3.449e-35	71.25	Calmodulin OS=Perca flavescens GN=calm PE=2 SV=3	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-704-099-A05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY734859 ID=EY734859; Name=EY734859; organism=Citrus sinensis; type=EST; length=920bp
CCACGCGTCCGCTCTCTCTCCATTTGATTTTGCGGGGCCTTTATTTCCGA
CTTTATGGTGTCTGTCCCAAACAAGTTGGCCGTAGCTCTCACCGACTATA
TTAGCTCCTACATCAGGGAAGCCTTCGGCTTGTTCGACAAGGACGGCGAC
GGTTGCATTACCACCGAGGAGCTTGGCACTGTTATGAGGTCACTGGGTCA
GAACCCCACTGAGGCTGAGCTGGGGGACGTGATCTATGAGGCGGATGCTG
ATGGCAATGGAACTATTGATTTTCCTGATTTCCTAAAGCTCATGGCCAGG
AATATGGGGGATACCCGACTCTCAAGATGAGCTGAGGGAGGCCTTCCGGG
TTTCCCACCTGGATCGCATTGGTTTCATCTCCGCTGTAGAAGTGCGGCGT
GAGATGACAAAGGTTGGGGCGGAGCTTCCTGATGAGGAAGTCGAAGACCT
GATAGGGGAAGGGGAAGCCCCGGGTGCGCGCCCCATAGAGTAGACGGCCC
TGCGCCGACCCCCGGGGCGGGTCAGCACGTCGGCTGCCCCGCCGGCCCCT
CCTCCGCGGACCCCCCACCTAGATGCCGTGAAACGGCGAAAGACGGGCGG
CCCGCCCCCCCCCCCGCCCGACAGGCCAGCAGGCGGGCGGCGCCCCAAAA
GGCGGCCGGCCCCCGCGCGCCGGTAGGGAACGCCGCGTCAAGGGAAGGGC
GGCGCCGCGCGAGCAGGAAACGACCGACGGGAGACCACCCGTCGCGGGAG
CCGCACGGACGCGCGGGCGCGCGACGCGAGGCAGGGGATTCCTATCAGGA
AAGCGACAGTGCGCGACAGGGTGGGGGCGCACGGCACGGCACAGAGCGGG
AGGGGCATCGACGCGTCCAGGGAAGACGGCGCCCGCCGGCCGCGGGCGGG
CGCATCGCGCGCACTCGAGC