EY734859 | Citrus Genome Database

Overview


Name	EY734859
Unique Name	EY734859
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	920

Libraries


Library Name	Type
Sweet orange fruit, development stadium (5 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: CALM_SUBDO (Calmodulin OS=Suberites domuncula PE=2 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 9.931e-35
Identity = 55/80 (68.75%), Postives = 64/80 (80.00%), Query Frame = 1

Query:   76 LAVALTDYISSYIREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARNMGDT 315
            +A  LT+   +  +EAF LFDKDGDG ITT+ELGTVMRSLGQNPTEAEL D+I E D DGNGTIDFP+FL +MAR M +T
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDTDGNGTIDFPEFLTMMARKMKET 80

HSP 2 Score: 58.151 bits (139), Expect = 9.931e-35
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 2

Query:  317 DSQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGEGEAPG 475
            DS++E+REAFRV   D  GFISA E+R  MT +G +L DEEV+++I E +  G
Sbjct:   81 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADTDG 133

[Close]

BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: CALN_CHICK (Neo-calmodulin (Fragment) OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.004e-34
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 1

Query:  115 REAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARNMGDT 315
            +EAF LFDKDGDG ITT+ELGTVMRSLGQNPTEAEL D+I E DADGNGTIDFP+FL +MAR M DT
Sbjct:    3 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDT 69

HSP 2 Score: 56.9954 bits (136), Expect = 1.004e-34
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 2

Query:  317 DSQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGEGEAPG 475
            DS++E+REAFRV   D  G+ISA E+R  MT +G +L DEEV+++I E +  G
Sbjct:   70 DSEEEIREAFRVFDKDSNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 122

[Close]

BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: CALM_PROMN (Calmodulin OS=Prorocentrum minimum PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.294e-34
Identity = 58/80 (72.50%), Postives = 65/80 (81.25%), Query Frame = 1

Query:   76 LAVALTDYISSYIREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARNMGDT 315
            +A  LT+   +  +EAF LFDKDGDG ITT+ELGTVMRSLGQNPTEAEL D+I E DADGNGTIDFP+FL LMAR M DT
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDT 80

HSP 2 Score: 53.5286 bits (127), Expect = 1.294e-34
Identity = 26/53 (49.06%), Postives = 37/53 (69.81%), Query Frame = 2

Query:  317 DSQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGEGEAPG 475
            D+++EL EAF+V   D  GFISA E+R  MT +G +L DEEV+++I E +  G
Sbjct:   81 DTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDG 133

[Close]

BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: CALM_PFIPI (Calmodulin OS=Pfiesteria piscicida PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.294e-34
Identity = 58/80 (72.50%), Postives = 65/80 (81.25%), Query Frame = 1

Query:   76 LAVALTDYISSYIREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARNMGDT 315
            +A  LT+   +  +EAF LFDKDGDG ITT+ELGTVMRSLGQNPTEAEL D+I E DADGNGTIDFP+FL LMAR M DT
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDT 80

HSP 2 Score: 53.5286 bits (127), Expect = 1.294e-34
Identity = 26/53 (49.06%), Postives = 37/53 (69.81%), Query Frame = 2

Query:  317 DSQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGEGEAPG 475
            D+++EL EAF+V   D  GFISA E+R  MT +G +L DEEV+++I E +  G
Sbjct:   81 DTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDG 133

[Close]

BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: CALM_KARMI (Calmodulin OS=Karlodinium micrum PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.294e-34
Identity = 58/80 (72.50%), Postives = 65/80 (81.25%), Query Frame = 1

Query:   76 LAVALTDYISSYIREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARNMGDT 315
            +A  LT+   +  +EAF LFDKDGDG ITT+ELGTVMRSLGQNPTEAEL D+I E DADGNGTIDFP+FL LMAR M DT
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDT 80

HSP 2 Score: 53.5286 bits (127), Expect = 1.294e-34
Identity = 26/53 (49.06%), Postives = 37/53 (69.81%), Query Frame = 2

Query:  317 DSQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGEGEAPG 475
            D+++EL EAF+V   D  GFISA E+R  MT +G +L DEEV+++I E +  G
Sbjct:   81 DTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDG 133

[Close]

BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: CALM_ALEFU (Calmodulin OS=Alexandrium fundyense PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.294e-34
Identity = 58/80 (72.50%), Postives = 65/80 (81.25%), Query Frame = 1

Query:   76 LAVALTDYISSYIREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARNMGDT 315
            +A  LT+   +  +EAF LFDKDGDG ITT+ELGTVMRSLGQNPTEAEL D+I E DADGNGTIDFP+FL LMAR M DT
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDT 80

HSP 2 Score: 53.5286 bits (127), Expect = 1.294e-34
Identity = 26/53 (49.06%), Postives = 37/53 (69.81%), Query Frame = 2

Query:  317 DSQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGEGEAPG 475
            D+++EL EAF+V   D  GFISA E+R  MT +G +L DEEV+++I E +  G
Sbjct:   81 DTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDG 133

[Close]

BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: CALM_MYXGL (Calmodulin OS=Myxine glutinosa PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 1.294e-34
Identity = 56/80 (70.00%), Postives = 65/80 (81.25%), Query Frame = 1

Query:   76 LAVALTDYISSYIREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARNMGDT 315
            +A  LT+   +  +EAF LFDKDGDG ITT+ELGTVMRSLGQNPTEAEL D+I E +ADGNGTIDFP+FL +MAR M DT
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVNADGNGTIDFPEFLTMMARKMKDT 80

HSP 2 Score: 56.6102 bits (135), Expect = 1.294e-34
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 2

Query:  317 DSQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGEGEAPG 475
            DS++E+REAFRV   D  G+ISA E+R  MT +G +L DEEV+++I E +  G
Sbjct:   81 DSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 133

[Close]

BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: CALM_ORYLA (Calmodulin-A (Fragment) OS=Oryzias latipes GN=calm1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.301e-34
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 1

Query:  115 REAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARNMGDT 315
            +EAF LFDKDGDG ITT+ELGTVMRSLGQNPTEAEL D+I E DADGNGTIDFP+FL +MAR M DT
Sbjct:    7 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDT 73

HSP 2 Score: 56.6102 bits (135), Expect = 1.301e-34
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 2

Query:  317 DSQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGEGEAPG 475
            DS++E+REAFRV   D  G+ISA E+R  MT +G +L DEEV+++I E +  G
Sbjct:   74 DSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 126

[Close]

BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: CALM_CHLRE (Calmodulin OS=Chlamydomonas reinhardtii PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.678e-34
Identity = 56/76 (73.68%), Postives = 63/76 (82.89%), Query Frame = 1

Query:   88 LTDYISSYIREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARNMGDT 315
            LT+   +  +EAF LFDKDGDG ITT+ELGTVMRSLGQNPTEAEL D+I E DADGNGTIDFP+FL LMAR M +T
Sbjct:    8 LTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMISEVDADGNGTIDFPEFLMLMARKMKET 83

HSP 2 Score: 55.8398 bits (133), Expect = 1.678e-34
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 2

Query:  317 DSQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGEGEAPG 475
            D +DELREAF+V   D  GFISA E+R  MT +G +L +EEV+++I E +  G
Sbjct:   84 DHEDELREAFKVFDKDGNGFISAAELRHVMTNLGEKLSEEEVDEMIREADVDG 136

[Close]

BLAST of EY734859 vs. ExPASy Swiss-Prot
Match: CALM_SACJA (Calmodulin OS=Saccharina japonica GN=cam PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.685e-34
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 1

Query:   76 LAVALTDYISSYIREAFGLFDKDGDGCITTEELGTVMRSLGQNPTEAELGDVIYEADADGNGTIDFPDFLKLMARNMGDT 315
            +A  LT+   +  +EAF LFDKDGDG ITT+ELGTVMRSLGQNPTEAEL D+I E DADGNGTIDFP+FL +MAR M DT
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDADGNGTIDFPEFLTMMARKMKDT 80

HSP 2 Score: 53.5286 bits (127), Expect = 1.685e-34
Identity = 26/53 (49.06%), Postives = 37/53 (69.81%), Query Frame = 2

Query:  317 DSQDELREAFRVSHLDRIGFISAVEVRREMTKVGAELPDEEVEDLIGEGEAPG 475
            DS++E+ EAF+V   D  GFISA E+R  MT +G +L DEEV+++I E +  G
Sbjct:   81 DSEEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDG 133

The following BLAST results are available for this feature:

BLAST of EY734859 vs. ExPASy Swiss-Prot

BLAST of EY734859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 183


Match Name	E-value	Identity	Description
CALM_SUBDO	9.931e-35	68.75	Calmodulin OS=Suberites domuncula PE=2 SV=3	[more]
CALN_CHICK	1.004e-34	80.60	Neo-calmodulin (Fragment) OS=Gallus gallus PE=2 SV...	[more]
CALM_PROMN	1.294e-34	72.50	Calmodulin OS=Prorocentrum minimum PE=2 SV=1	[more]
CALM_PFIPI	1.294e-34	72.50	Calmodulin OS=Pfiesteria piscicida PE=2 SV=1	[more]
CALM_KARMI	1.294e-34	72.50	Calmodulin OS=Karlodinium micrum PE=2 SV=1	[more]
CALM_ALEFU	1.294e-34	72.50	Calmodulin OS=Alexandrium fundyense PE=2 SV=1	[more]
CALM_MYXGL	1.294e-34	70.00	Calmodulin OS=Myxine glutinosa PE=2 SV=3	[more]
CALM_ORYLA	1.301e-34	80.60	Calmodulin-A (Fragment) OS=Oryzias latipes GN=calm...	[more]
CALM_CHLRE	1.678e-34	73.68	Calmodulin OS=Chlamydomonas reinhardtii PE=1 SV=2	[more]
CALM_SACJA	1.685e-34	71.25	Calmodulin OS=Saccharina japonica GN=cam PE=2 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-704-099-A05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY734859 ID=EY734859; Name=EY734859; organism=Citrus sinensis; type=EST; length=920bp
CCACGCGTCCGCTCTCTCTCCATTTGATTTTGCGGGGCCTTTATTTCCGA
CTTTATGGTGTCTGTCCCAAACAAGTTGGCCGTAGCTCTCACCGACTATA
TTAGCTCCTACATCAGGGAAGCCTTCGGCTTGTTCGACAAGGACGGCGAC
GGTTGCATTACCACCGAGGAGCTTGGCACTGTTATGAGGTCACTGGGTCA
GAACCCCACTGAGGCTGAGCTGGGGGACGTGATCTATGAGGCGGATGCTG
ATGGCAATGGAACTATTGATTTTCCTGATTTCCTAAAGCTCATGGCCAGG
AATATGGGGGATACCCGACTCTCAAGATGAGCTGAGGGAGGCCTTCCGGG
TTTCCCACCTGGATCGCATTGGTTTCATCTCCGCTGTAGAAGTGCGGCGT
GAGATGACAAAGGTTGGGGCGGAGCTTCCTGATGAGGAAGTCGAAGACCT
GATAGGGGAAGGGGAAGCCCCGGGTGCGCGCCCCATAGAGTAGACGGCCC
TGCGCCGACCCCCGGGGCGGGTCAGCACGTCGGCTGCCCCGCCGGCCCCT
CCTCCGCGGACCCCCCACCTAGATGCCGTGAAACGGCGAAAGACGGGCGG
CCCGCCCCCCCCCCCGCCCGACAGGCCAGCAGGCGGGCGGCGCCCCAAAA
GGCGGCCGGCCCCCGCGCGCCGGTAGGGAACGCCGCGTCAAGGGAAGGGC
GGCGCCGCGCGAGCAGGAAACGACCGACGGGAGACCACCCGTCGCGGGAG
CCGCACGGACGCGCGGGCGCGCGACGCGAGGCAGGGGATTCCTATCAGGA
AAGCGACAGTGCGCGACAGGGTGGGGGCGCACGGCACGGCACAGAGCGGG
AGGGGCATCGACGCGTCCAGGGAAGACGGCGCCCGCCGGCCGCGGGCGGG
CGCATCGCGCGCACTCGAGC