EY734857

Overview
NameEY734857
Unique NameEY734857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_PSEPG (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas putida (strain GB-1) GN=lldD PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.255e-13
Identity = 40/105 (38.10%), Postives = 59/105 (56.19%), Query Frame = 3
Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHMHNRK 494
            +KG+L   DAR A    A GI+VSNHG RQLD V ++  AL  +  A  G + +L D G++ G DV + +A  A  + IGR   Y+L   G   +K +L +  ++
Sbjct:  250 IKGILDADDARDAVKFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDLKILADSGIRSGLDVVRMIALGADTVLIGRAFLYALAVHGQAGVKNLLELFEKE 354          
BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_PSEP1 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=lldD PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.255e-13
Identity = 40/105 (38.10%), Postives = 59/105 (56.19%), Query Frame = 3
Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHMHNRK 494
            +KG+L   DAR A    A GI+VSNHG RQLD V ++  AL  +  A  G + +L D G++ G DV + +A  A  + IGR   Y+L   G   +K +L +  ++
Sbjct:  250 IKGILDADDARDAVKFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDLKILADSGIRSGLDVVRMIALGADTVLIGRAFLYALAVHGQAGVKNLLELFEKE 354          
BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_AZOC5 (L-lactate dehydrogenase [cytochrome] OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=lldD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.864e-13
Identity = 41/101 (40.59%), Postives = 59/101 (58.42%), Query Frame = 3
Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHM 482
            +KG+L P DAR A +  A GI+VSNHG RQLD V ++  AL  +  A    + VL D G++ G DV + LA  A  + +GR  AY+L + G   +  +L +
Sbjct:  250 IKGILDPVDARDAVAFGADGIVVSNHGGRQLDGVLSSARALPAIADAVGDDLTVLADSGIRTGLDVVRMLALGAKGVLLGRAFAYALATHGQAGVANLLDL 350          
BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_PSEPW (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas putida (strain W619) GN=lldD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.997e-12
Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 3
Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHMHNRK 494
            +KG+L   DAR A    A GI+VSNHG RQLD V ++  AL  +  A  G + +L D G++ G DV + +A  A  + IGR   ++L   G   +K +L +  ++
Sbjct:  250 IKGILDADDARDAVKFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDLKILADSGIRSGLDVVRMIALGADTVLIGRAFLWALAVHGQAGVKNLLELFEKE 354          
BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: YKN3_SCHPO (Uncharacterized lactate 2-monooxygenase PB1A11.03 OS=Schizosaccharomyces pombe GN=SPAPB1A11.03 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.208e-11
Identity = 45/124 (36.29%), Postives = 62/124 (50.00%), Query Frame = 3
Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAG-----HIC------LKTVLHMHNRKYHLPTDLN 518
            +KG++   DA+ A      GI+VSNHG RQ D   A++  L ++V A   ++ VL D GV+ G D+ K LA  A  + IGRP  Y L   G     H+       L+  LH+       P DLN
Sbjct:  276 LKGIMNVPDAKKAVEYGMQGIVVSNHGGRQQDGGVASLTMLPKIVDAVGDKLDVLFDSGVRSGADIAKALALGAKMVLIGRPYVYGLALEGSSGVSHVIRCLLGDLELTLHLSGIVSVKPKDLN 399          
The following BLAST results are available for this feature:
BLAST of EY734857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
LLDD_PSEPG5.255e-1338.10L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEP15.255e-1338.10L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_AZOC56.864e-1340.59L-lactate dehydrogenase [cytochrome] OS=Azorhizobi... [more]
LLDD_PSEPW1.997e-1237.14L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
YKN3_SCHPO2.208e-1136.29Uncharacterized lactate 2-monooxygenase PB1A11.03 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-103-H12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY734857 ID=EY734857; Name=EY734857; organism=Citrus sinensis; type=EST; length=820bp
CCACGCGTCCGCTCTACCACCATTTTTGACATTAAAGAATTTTCATGGTT
TGGACCTTGGCAAGATGGACGAGGCAAATGACTCTGGGCTTGCTGCCTAT
GTTGCTGGTCAAATTGATCGTTCTCTGAGCTGGAAGGACGTGAAGTGGCT
TCAAACAATCACCAAATTGCCAATTCTGAGTGAAGGGTGTACTCACACCA
CAGGATGCGCGGATTGCATGATCGGCTGAAGCAACTGGCATTATTGTATC
CAATCATGGACCTCGTCAACTTGACTATGTCCCTGCCACTATCATGGCCC
TGGAAGAGGTTGTGAAAGCTACTCATGGGCGTATTCCTGTGCTCTTGGAT
GGTGGTGTTAAGCGAGGAACTGATGTCTTCAAAACATTGGCACCTGAAGC
CTCTGATATATTTATTGGACGACCAGCGGCGTACTCATTGACATCTGCCG
GACACATATGCCTAAAAACAGTACTCCACATGCATAACAGAAAATACCAT
CTACCCACGGATCTAAATATGCCATCAATGATCCAACCTAAAACTGCCAT
ATCACCTAACCTTGTGTACGCGCCACCATCTCCTCTCCACCCCCTGTCTT
CACACTGCAGGATACCGACATCTACCAAACCACTCAATCTCAACAATTCC
ATTAACCCACTCTGTACTAACATATACCGTGCAAGGCATCAAACATCCAT
TACATATGCACGCACCTATATGCCACCCTCCCCCCACCTACTCCACACAT
CTACCTACCTCCCGGCCAACATACCAGATACCGCAACCAACGCTATATTG
CCGCTCATACCAGCCACTCA
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