EY734857 | Citrus Genome Database

Overview


Name	EY734857
Unique Name	EY734857
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	820

Libraries


Library Name	Type
Sweet orange fruit, development stadium (5 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_SALHS (L-lactate dehydrogenase [cytochrome] OS=Salmonella heidelberg (strain SL476) GN=lldD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.910e-17
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHM 482
            +KG+L P+DAR A    A GI+VSNHG RQLD V ++  AL  +  A  G I +L D G++ G DV + +A  A  + +GR   Y+L +AG   +  +L +
Sbjct:  250 IKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDL 350

HSP 2 Score: 30.8018 bits (68), Expect = 6.910e-17
Identity = 16/50 (32.00%), Postives = 27/50 (54.00%), Query Frame = 2

Query:   53 DLGKMDE--ANDSGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILSEG 187
            DLG +       +GL  Y+   A   D S+SWKD++W++     P++ +G
Sbjct:  203 DLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIREFWDGPMVIKG 252

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_SALG2 (L-lactate dehydrogenase [cytochrome] OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=lldD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.910e-17
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHM 482
            +KG+L P+DAR A    A GI+VSNHG RQLD V ++  AL  +  A  G I +L D G++ G DV + +A  A  + +GR   Y+L +AG   +  +L +
Sbjct:  250 IKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDL 350

HSP 2 Score: 30.8018 bits (68), Expect = 6.910e-17
Identity = 16/50 (32.00%), Postives = 27/50 (54.00%), Query Frame = 2

Query:   53 DLGKMDE--ANDSGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILSEG 187
            DLG +       +GL  Y+   A   D S+SWKD++W++     P++ +G
Sbjct:  203 DLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIREFWDGPMVIKG 252

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_SALEP (L-lactate dehydrogenase [cytochrome] OS=Salmonella enteritidis PT4 (strain P125109) GN=lldD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.910e-17
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHM 482
            +KG+L P+DAR A    A GI+VSNHG RQLD V ++  AL  +  A  G I +L D G++ G DV + +A  A  + +GR   Y+L +AG   +  +L +
Sbjct:  250 IKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDL 350

HSP 2 Score: 30.8018 bits (68), Expect = 6.910e-17
Identity = 16/50 (32.00%), Postives = 27/50 (54.00%), Query Frame = 2

Query:   53 DLGKMDE--ANDSGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILSEG 187
            DLG +       +GL  Y+   A   D S+SWKD++W++     P++ +G
Sbjct:  203 DLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIREFWDGPMVIKG 252

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_SALDC (L-lactate dehydrogenase [cytochrome] OS=Salmonella dublin (strain CT_02021853) GN=lldD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.910e-17
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHM 482
            +KG+L P+DAR A    A GI+VSNHG RQLD V ++  AL  +  A  G I +L D G++ G DV + +A  A  + +GR   Y+L +AG   +  +L +
Sbjct:  250 IKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDL 350

HSP 2 Score: 30.8018 bits (68), Expect = 6.910e-17
Identity = 16/50 (32.00%), Postives = 27/50 (54.00%), Query Frame = 2

Query:   53 DLGKMDE--ANDSGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILSEG 187
            DLG +       +GL  Y+   A   D S+SWKD++W++     P++ +G
Sbjct:  203 DLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIREFWDGPMVIKG 252

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_SALCH (L-lactate dehydrogenase [cytochrome] OS=Salmonella choleraesuis GN=lldD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.910e-17
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHM 482
            +KG+L P+DAR A    A GI+VSNHG RQLD V ++  AL  +  A  G I +L D G++ G DV + +A  A  + +GR   Y+L +AG   +  +L +
Sbjct:  250 IKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDL 350

HSP 2 Score: 30.8018 bits (68), Expect = 6.910e-17
Identity = 16/50 (32.00%), Postives = 27/50 (54.00%), Query Frame = 2

Query:   53 DLGKMDE--ANDSGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILSEG 187
            DLG +       +GL  Y+   A   D S+SWKD++W++     P++ +G
Sbjct:  203 DLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIREFWDGPMVIKG 252

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_SALAR (L-lactate dehydrogenase [cytochrome] OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=lldD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.910e-17
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHM 482
            +KG+L P+DAR A    A GI+VSNHG RQLD V ++  AL  +  A  G I +L D G++ G DV + +A  A  + +GR   Y+L +AG   +  +L +
Sbjct:  250 IKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDL 350

HSP 2 Score: 30.8018 bits (68), Expect = 6.910e-17
Identity = 16/50 (32.00%), Postives = 27/50 (54.00%), Query Frame = 2

Query:   53 DLGKMDE--ANDSGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILSEG 187
            DLG +       +GL  Y+   A   D S+SWKD++W++     P++ +G
Sbjct:  203 DLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIREFWDGPMVIKG 252

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_SALA4 (L-lactate dehydrogenase [cytochrome] OS=Salmonella agona (strain SL483) GN=lldD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.910e-17
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHM 482
            +KG+L P+DAR A    A GI+VSNHG RQLD V ++  AL  +  A  G I +L D G++ G DV + +A  A  + +GR   Y+L +AG   +  +L +
Sbjct:  250 IKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDL 350

HSP 2 Score: 30.8018 bits (68), Expect = 6.910e-17
Identity = 16/50 (32.00%), Postives = 27/50 (54.00%), Query Frame = 2

Query:   53 DLGKMDE--ANDSGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILSEG 187
            DLG +       +GL  Y+   A   D S+SWKD++W++     P++ +G
Sbjct:  203 DLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIREFWDGPMVIKG 252

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_XANP2 (L-lactate dehydrogenase [cytochrome] OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=lldD PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.914e-17
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVL 476
            +KG+L P+DAR A    A GIIVSNHG RQLD V ++  A+  +  A  G + +L D G++ G DV + LA  A  + +GR   Y+L +AG   ++ +L
Sbjct:  250 IKGILDPEDARDAVRFGADGIIVSNHGGRQLDGVLSSARAMPAIADAVKGEMTLLADSGIRSGLDVVRMLAQGADGVLLGRAFVYALAAAGRAGVENLL 348

HSP 2 Score: 30.0314 bits (66), Expect = 6.914e-17
Identity = 18/66 (27.27%), Postives = 31/66 (46.97%), Query Frame = 2

Query:   32 LKNFHGLDLGKMDEANDSG-LAAY-------------VAGQIDRSLSWKDVKWLQTITKLPILSEG 187
            L  F   D+G M   +D G ++AY             +    D S+ WKD++W++   K P++ +G
Sbjct:  187 LHPFWAYDVGLMGTPHDLGNVSAYRKEKTSLEDYVGWLGNNFDPSIGWKDLEWIREFWKGPMVIKG 252

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_SERP5 (L-lactate dehydrogenase [cytochrome] OS=Serratia proteamaculans (strain 568) GN=lldD PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.918e-17
Identity = 43/112 (38.39%), Postives = 67/112 (59.82%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHMHNRKYHLPTDL 515
            +KG+L P+DA+ A    A GI+VSNHG RQLD V +T  AL  + +A  G I +L D G++ G DV + +A  A  + +GR  AY+L +AG   +  +L + +++  +   L
Sbjct:  250 IKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGVLSTAHALPAIAEAVKGDITLLADSGIRSGLDVVRMIALGADGVLLGRAFAYALAAAGQAGVANLLELIDKEMRVAMTL 361

HSP 2 Score: 27.7202 bits (60), Expect = 6.918e-17
Identity = 9/30 (30.00%), Postives = 19/30 (63.33%), Query Frame = 2

Query:   98 YVAGQIDRSLSWKDVKWLQTITKLPILSEG 187
            ++    D S+SWKD+ W++   + P++ +G
Sbjct:  223 WLGTNFDPSISWKDLDWIREFWQGPMIIKG 252

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_SHISS (L-lactate dehydrogenase [cytochrome] OS=Shigella sonnei (strain Ss046) GN=lldD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.982e-17
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHM 482
            +KG+L P+DAR A    A GI+VSNHG RQLD V ++  AL  +  A  G I +L D G++ G DV + +A  A  + +GR   Y+L +AG   +  +L++
Sbjct:  250 IKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNL 350

HSP 2 Score: 29.261 bits (64), Expect = 8.982e-17
Identity = 15/50 (30.00%), Postives = 26/50 (52.00%), Query Frame = 2

Query:   53 DLGKMDE--ANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILSEG 187
            DLG +       +GL  Y+       D S+SWKD++W++     P++ +G
Sbjct:  203 DLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKG 252

The following BLAST results are available for this feature:

BLAST of EY734857 vs. ExPASy Swiss-Prot

BLAST of EY734857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125


Match Name	E-value	Identity	Description
LLDD_SALHS	6.910e-17	40.59	L-lactate dehydrogenase [cytochrome] OS=Salmonella...	[more]
LLDD_SALG2	6.910e-17	40.59	L-lactate dehydrogenase [cytochrome] OS=Salmonella...	[more]
LLDD_SALEP	6.910e-17	40.59	L-lactate dehydrogenase [cytochrome] OS=Salmonella...	[more]
LLDD_SALDC	6.910e-17	40.59	L-lactate dehydrogenase [cytochrome] OS=Salmonella...	[more]
LLDD_SALCH	6.910e-17	40.59	L-lactate dehydrogenase [cytochrome] OS=Salmonella...	[more]
LLDD_SALAR	6.910e-17	40.59	L-lactate dehydrogenase [cytochrome] OS=Salmonella...	[more]
LLDD_SALA4	6.910e-17	40.59	L-lactate dehydrogenase [cytochrome] OS=Salmonella...	[more]
LLDD_XANP2	6.914e-17	41.41	L-lactate dehydrogenase [cytochrome] OS=Xanthobact...	[more]
LLDD_SERP5	6.918e-17	38.39	L-lactate dehydrogenase [cytochrome] OS=Serratia p...	[more]
LLDD_SHISS	8.982e-17	40.59	L-lactate dehydrogenase [cytochrome] OS=Shigella s...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-704-103-H12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY734857 ID=EY734857; Name=EY734857; organism=Citrus sinensis; type=EST; length=820bp
CCACGCGTCCGCTCTACCACCATTTTTGACATTAAAGAATTTTCATGGTT
TGGACCTTGGCAAGATGGACGAGGCAAATGACTCTGGGCTTGCTGCCTAT
GTTGCTGGTCAAATTGATCGTTCTCTGAGCTGGAAGGACGTGAAGTGGCT
TCAAACAATCACCAAATTGCCAATTCTGAGTGAAGGGTGTACTCACACCA
CAGGATGCGCGGATTGCATGATCGGCTGAAGCAACTGGCATTATTGTATC
CAATCATGGACCTCGTCAACTTGACTATGTCCCTGCCACTATCATGGCCC
TGGAAGAGGTTGTGAAAGCTACTCATGGGCGTATTCCTGTGCTCTTGGAT
GGTGGTGTTAAGCGAGGAACTGATGTCTTCAAAACATTGGCACCTGAAGC
CTCTGATATATTTATTGGACGACCAGCGGCGTACTCATTGACATCTGCCG
GACACATATGCCTAAAAACAGTACTCCACATGCATAACAGAAAATACCAT
CTACCCACGGATCTAAATATGCCATCAATGATCCAACCTAAAACTGCCAT
ATCACCTAACCTTGTGTACGCGCCACCATCTCCTCTCCACCCCCTGTCTT
CACACTGCAGGATACCGACATCTACCAAACCACTCAATCTCAACAATTCC
ATTAACCCACTCTGTACTAACATATACCGTGCAAGGCATCAAACATCCAT
TACATATGCACGCACCTATATGCCACCCTCCCCCCACCTACTCCACACAT
CTACCTACCTCCCGGCCAACATACCAGATACCGCAACCAACGCTATATTG
CCGCTCATACCAGCCACTCA