EY734857 | Citrus Genome Database

Overview


Name	EY734857
Unique Name	EY734857
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	820

Libraries


Library Name	Type
Sweet orange fruit, development stadium (5 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_SHIFL (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri GN=lldD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.982e-17
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHM 482
            +KG+L P+DAR A    A GI+VSNHG RQLD V ++  AL  +  A  G I +L D G++ G DV + +A  A  + +GR   Y+L +AG   +  +L++
Sbjct:  250 IKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNL 350

HSP 2 Score: 29.261 bits (64), Expect = 8.982e-17
Identity = 15/50 (30.00%), Postives = 26/50 (52.00%), Query Frame = 2

Query:   53 DLGKMDE--ANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILSEG 187
            DLG +       +GL  Y+       D S+SWKD++W++     P++ +G
Sbjct:  203 DLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKG 252

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_SHIF8 (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri serotype 5b (strain 8401) GN=lldD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.982e-17
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHM 482
            +KG+L P+DAR A    A GI+VSNHG RQLD V ++  AL  +  A  G I +L D G++ G DV + +A  A  + +GR   Y+L +AG   +  +L++
Sbjct:  250 IKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNL 350

HSP 2 Score: 29.261 bits (64), Expect = 8.982e-17
Identity = 15/50 (30.00%), Postives = 26/50 (52.00%), Query Frame = 2

Query:   53 DLGKMDE--ANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILSEG 187
            DLG +       +GL  Y+       D S+SWKD++W++     P++ +G
Sbjct:  203 DLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKG 252

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_SHIDS (L-lactate dehydrogenase [cytochrome] OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=lldD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.982e-17
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHM 482
            +KG+L P+DAR A    A GI+VSNHG RQLD V ++  AL  +  A  G I +L D G++ G DV + +A  A  + +GR   Y+L +AG   +  +L++
Sbjct:  250 IKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNL 350

HSP 2 Score: 29.261 bits (64), Expect = 8.982e-17
Identity = 15/50 (30.00%), Postives = 26/50 (52.00%), Query Frame = 2

Query:   53 DLGKMDE--ANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILSEG 187
            DLG +       +GL  Y+       D S+SWKD++W++     P++ +G
Sbjct:  203 DLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKG 252

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_SHIBS (L-lactate dehydrogenase [cytochrome] OS=Shigella boydii serotype 4 (strain Sb227) GN=lldD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.982e-17
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHM 482
            +KG+L P+DAR A    A GI+VSNHG RQLD V ++  AL  +  A  G I +L D G++ G DV + +A  A  + +GR   Y+L +AG   +  +L++
Sbjct:  250 IKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNL 350

HSP 2 Score: 29.261 bits (64), Expect = 8.982e-17
Identity = 15/50 (30.00%), Postives = 26/50 (52.00%), Query Frame = 2

Query:   53 DLGKMDE--ANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILSEG 187
            DLG +       +GL  Y+       D S+SWKD++W++     P++ +G
Sbjct:  203 DLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKG 252

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_SHIB3 (L-lactate dehydrogenase [cytochrome] OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=lldD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.982e-17
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHM 482
            +KG+L P+DAR A    A GI+VSNHG RQLD V ++  AL  +  A  G I +L D G++ G DV + +A  A  + +GR   Y+L +AG   +  +L++
Sbjct:  250 IKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNL 350

HSP 2 Score: 29.261 bits (64), Expect = 8.982e-17
Identity = 15/50 (30.00%), Postives = 26/50 (52.00%), Query Frame = 2

Query:   53 DLGKMDE--ANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILSEG 187
            DLG +       +GL  Y+       D S+SWKD++W++     P++ +G
Sbjct:  203 DLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKG 252

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_ECOSM (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.982e-17
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHM 482
            +KG+L P+DAR A    A GI+VSNHG RQLD V ++  AL  +  A  G I +L D G++ G DV + +A  A  + +GR   Y+L +AG   +  +L++
Sbjct:  250 IKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNL 350

HSP 2 Score: 29.261 bits (64), Expect = 8.982e-17
Identity = 15/50 (30.00%), Postives = 26/50 (52.00%), Query Frame = 2

Query:   53 DLGKMDE--ANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILSEG 187
            DLG +       +GL  Y+       D S+SWKD++W++     P++ +G
Sbjct:  203 DLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKG 252

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_ECOSE (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain SE11) GN=lldD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.982e-17
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHM 482
            +KG+L P+DAR A    A GI+VSNHG RQLD V ++  AL  +  A  G I +L D G++ G DV + +A  A  + +GR   Y+L +AG   +  +L++
Sbjct:  250 IKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNL 350

HSP 2 Score: 29.261 bits (64), Expect = 8.982e-17
Identity = 15/50 (30.00%), Postives = 26/50 (52.00%), Query Frame = 2

Query:   53 DLGKMDE--ANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILSEG 187
            DLG +       +GL  Y+       D S+SWKD++W++     P++ +G
Sbjct:  203 DLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKG 252

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_ECOLU (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.982e-17
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHM 482
            +KG+L P+DAR A    A GI+VSNHG RQLD V ++  AL  +  A  G I +L D G++ G DV + +A  A  + +GR   Y+L +AG   +  +L++
Sbjct:  250 IKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNL 350

HSP 2 Score: 29.261 bits (64), Expect = 8.982e-17
Identity = 15/50 (30.00%), Postives = 26/50 (52.00%), Query Frame = 2

Query:   53 DLGKMDE--ANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILSEG 187
            DLG +       +GL  Y+       D S+SWKD++W++     P++ +G
Sbjct:  203 DLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKG 252

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_ECOLI (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain K12) GN=lldD PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.982e-17
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHM 482
            +KG+L P+DAR A    A GI+VSNHG RQLD V ++  AL  +  A  G I +L D G++ G DV + +A  A  + +GR   Y+L +AG   +  +L++
Sbjct:  250 IKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNL 350

HSP 2 Score: 29.261 bits (64), Expect = 8.982e-17
Identity = 15/50 (30.00%), Postives = 26/50 (52.00%), Query Frame = 2

Query:   53 DLGKMDE--ANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILSEG 187
            DLG +       +GL  Y+       D S+SWKD++W++     P++ +G
Sbjct:  203 DLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKG 252

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_ECOLC (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=lldD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.982e-17
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHM 482
            +KG+L P+DAR A    A GI+VSNHG RQLD V ++  AL  +  A  G I +L D G++ G DV + +A  A  + +GR   Y+L +AG   +  +L++
Sbjct:  250 IKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNL 350

HSP 2 Score: 29.261 bits (64), Expect = 8.982e-17
Identity = 15/50 (30.00%), Postives = 26/50 (52.00%), Query Frame = 2

Query:   53 DLGKMDE--ANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILSEG 187
            DLG +       +GL  Y+       D S+SWKD++W++     P++ +G
Sbjct:  203 DLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKG 252

The following BLAST results are available for this feature:

BLAST of EY734857 vs. ExPASy Swiss-Prot

BLAST of EY734857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125


Match Name	E-value	Identity	Description
LLDD_SHIFL	8.982e-17	40.59	L-lactate dehydrogenase [cytochrome] OS=Shigella f...	[more]
LLDD_SHIF8	8.982e-17	40.59	L-lactate dehydrogenase [cytochrome] OS=Shigella f...	[more]
LLDD_SHIDS	8.982e-17	40.59	L-lactate dehydrogenase [cytochrome] OS=Shigella d...	[more]
LLDD_SHIBS	8.982e-17	40.59	L-lactate dehydrogenase [cytochrome] OS=Shigella b...	[more]
LLDD_SHIB3	8.982e-17	40.59	L-lactate dehydrogenase [cytochrome] OS=Shigella b...	[more]
LLDD_ECOSM	8.982e-17	40.59	L-lactate dehydrogenase [cytochrome] OS=Escherichi...	[more]
LLDD_ECOSE	8.982e-17	40.59	L-lactate dehydrogenase [cytochrome] OS=Escherichi...	[more]
LLDD_ECOLU	8.982e-17	40.59	L-lactate dehydrogenase [cytochrome] OS=Escherichi...	[more]
LLDD_ECOLI	8.982e-17	40.59	L-lactate dehydrogenase [cytochrome] OS=Escherichi...	[more]
LLDD_ECOLC	8.982e-17	40.59	L-lactate dehydrogenase [cytochrome] OS=Escherichi...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-704-103-H12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY734857 ID=EY734857; Name=EY734857; organism=Citrus sinensis; type=EST; length=820bp
CCACGCGTCCGCTCTACCACCATTTTTGACATTAAAGAATTTTCATGGTT
TGGACCTTGGCAAGATGGACGAGGCAAATGACTCTGGGCTTGCTGCCTAT
GTTGCTGGTCAAATTGATCGTTCTCTGAGCTGGAAGGACGTGAAGTGGCT
TCAAACAATCACCAAATTGCCAATTCTGAGTGAAGGGTGTACTCACACCA
CAGGATGCGCGGATTGCATGATCGGCTGAAGCAACTGGCATTATTGTATC
CAATCATGGACCTCGTCAACTTGACTATGTCCCTGCCACTATCATGGCCC
TGGAAGAGGTTGTGAAAGCTACTCATGGGCGTATTCCTGTGCTCTTGGAT
GGTGGTGTTAAGCGAGGAACTGATGTCTTCAAAACATTGGCACCTGAAGC
CTCTGATATATTTATTGGACGACCAGCGGCGTACTCATTGACATCTGCCG
GACACATATGCCTAAAAACAGTACTCCACATGCATAACAGAAAATACCAT
CTACCCACGGATCTAAATATGCCATCAATGATCCAACCTAAAACTGCCAT
ATCACCTAACCTTGTGTACGCGCCACCATCTCCTCTCCACCCCCTGTCTT
CACACTGCAGGATACCGACATCTACCAAACCACTCAATCTCAACAATTCC
ATTAACCCACTCTGTACTAACATATACCGTGCAAGGCATCAAACATCCAT
TACATATGCACGCACCTATATGCCACCCTCCCCCCACCTACTCCACACAT
CTACCTACCTCCCGGCCAACATACCAGATACCGCAACCAACGCTATATTG
CCGCTCATACCAGCCACTCA