EY734857 | Citrus Genome Database

Overview


Name	EY734857
Unique Name	EY734857
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	820

Libraries


Library Name	Type
Sweet orange fruit, development stadium (5 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_CAUSK (L-lactate dehydrogenase [cytochrome] OS=Caulobacter sp. (strain K31) GN=lldD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.169e-16
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAG 452
            +KGVL P+DA+ A    A GI+VSNHG RQLD V ++  AL ++ +A   R+ VL DGGV+ G DV + LA  A  + +GR   Y+L + G
Sbjct:  250 LKGVLDPEDAKAAADIGADGIVVSNHGGRQLDGVLSSARALPDIAEAVGDRLTVLADGGVRSGLDVVRMLALGAKGVLLGRAFVYALAARG 340

HSP 2 Score: 27.7202 bits (60), Expect = 1.169e-16
Identity = 9/30 (30.00%), Postives = 18/30 (60.00%), Query Frame = 2

Query:   98 YVAGQIDRSLSWKDVKWLQTITKLPILSEG 187
            ++    D S+ WKD+ W++   K P++ +G
Sbjct:  223 WLGANFDPSIQWKDLDWIRDQWKGPLILKG 252

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_PSEU2 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas syringae pv. syringae (strain B728a) GN=lldD PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.336e-16
Identity = 49/119 (41.18%), Postives = 71/119 (59.66%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHMHNRKYHLPTDLNMPSMIQ 536
            +KG+L PQDAR A S  A GI+VSNHG RQLD V +T  AL  +V+A    + VL D G++ G DV + LA  A  + +GR  AY+L + G   ++ +L +  R+ H+   L   + I+
Sbjct:  250 IKGILDPQDARDALSFGADGIVVSNHGGRQLDGVLSTAKALPPIVQAVGSDLTVLADSGIRSGLDVVRMLALGAKGVLLGRSMAYALGADGQRGVENMLDIFAREMHVAMTLTGVTSIE 368

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_ACIBY (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain AYE) GN=lldD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.519e-16
Identity = 41/112 (36.61%), Postives = 65/112 (58.04%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHMHNRKYHLPTDL 515
            +KG+L P+DA+ A    A GI+VSNHG RQLD V ++  AL  +  A  G + +L D G++ G DV + LA  A  + +GR   Y+L +AG   +  +L + +++  +   L
Sbjct:  250 IKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGVMSSARALPAIADAVKGDLAILADSGIRNGLDVVRMLALGADTVLLGRAFVYALAAAGGQGVSNLLDLIDKEMRVAMTL 361

HSP 2 Score: 30.0314 bits (66), Expect = 1.519e-16
Identity = 15/50 (30.00%), Postives = 27/50 (54.00%), Query Frame = 2

Query:   53 DLGKMDE--ANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILSEG 187
            DLG + +     +GL  Y+       D S+SWKD++W++     P++ +G
Sbjct:  203 DLGNISKYLGKPTGLEDYIGWLGSNFDPSISWKDLEWIREFWDGPMVIKG 252

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_ACIBT (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=lldD PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.519e-16
Identity = 41/112 (36.61%), Postives = 65/112 (58.04%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHMHNRKYHLPTDL 515
            +KG+L P+DA+ A    A GI+VSNHG RQLD V ++  AL  +  A  G + +L D G++ G DV + LA  A  + +GR   Y+L +AG   +  +L + +++  +   L
Sbjct:  250 IKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGVMSSARALPAIADAVKGDLAILADSGIRNGLDVVRMLALGADTVLLGRAFVYALAAAGGQGVSNLLDLIDKEMRVAMTL 361

HSP 2 Score: 30.0314 bits (66), Expect = 1.519e-16
Identity = 15/50 (30.00%), Postives = 27/50 (54.00%), Query Frame = 2

Query:   53 DLGKMDE--ANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILSEG 187
            DLG + +     +GL  Y+       D S+SWKD++W++     P++ +G
Sbjct:  203 DLGNISKYLGKPTGLEDYIGWLGSNFDPSISWKDLEWIREFWDGPMVIKG 252

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_ACIBS (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain SDF) GN=lldD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.519e-16
Identity = 41/112 (36.61%), Postives = 65/112 (58.04%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHMHNRKYHLPTDL 515
            +KG+L P+DA+ A    A GI+VSNHG RQLD V ++  AL  +  A  G + +L D G++ G DV + LA  A  + +GR   Y+L +AG   +  +L + +++  +   L
Sbjct:  250 IKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGVMSSARALPAIADAVKGDLAILADSGIRNGLDVVRMLALGADTVLLGRAFVYALAAAGGQGVSNLLDLIDKEMRVAMTL 361

HSP 2 Score: 30.0314 bits (66), Expect = 1.519e-16
Identity = 15/50 (30.00%), Postives = 27/50 (54.00%), Query Frame = 2

Query:   53 DLGKMDE--ANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILSEG 187
            DLG + +     +GL  Y+       D S+SWKD++W++     P++ +G
Sbjct:  203 DLGNISKYLGKPTGLEDYIGWLGSNFDPSISWKDLEWIREFWDGPMVIKG 252

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_ACIBC (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain ACICU) GN=lldD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.519e-16
Identity = 41/112 (36.61%), Postives = 65/112 (58.04%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHMHNRKYHLPTDL 515
            +KG+L P+DA+ A    A GI+VSNHG RQLD V ++  AL  +  A  G + +L D G++ G DV + LA  A  + +GR   Y+L +AG   +  +L + +++  +   L
Sbjct:  250 IKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGVMSSARALPAIADAVKGDLAILADSGIRNGLDVVRMLALGADTVLLGRAFVYALAAAGGQGVSNLLDLIDKEMRVAMTL 361

HSP 2 Score: 30.0314 bits (66), Expect = 1.519e-16
Identity = 15/50 (30.00%), Postives = 27/50 (54.00%), Query Frame = 2

Query:   53 DLGKMDE--ANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILSEG 187
            DLG + +     +GL  Y+       D S+SWKD++W++     P++ +G
Sbjct:  203 DLGNISKYLGKPTGLEDYIGWLGSNFDPSISWKDLEWIREFWDGPMVIKG 252

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_ACIB5 (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain AB0057) GN=lldD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.519e-16
Identity = 41/112 (36.61%), Postives = 65/112 (58.04%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHMHNRKYHLPTDL 515
            +KG+L P+DA+ A    A GI+VSNHG RQLD V ++  AL  +  A  G + +L D G++ G DV + LA  A  + +GR   Y+L +AG   +  +L + +++  +   L
Sbjct:  250 IKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGVMSSARALPAIADAVKGDLAILADSGIRNGLDVVRMLALGADTVLLGRAFVYALAAAGGQGVSNLLDLIDKEMRVAMTL 361

HSP 2 Score: 30.0314 bits (66), Expect = 1.519e-16
Identity = 15/50 (30.00%), Postives = 27/50 (54.00%), Query Frame = 2

Query:   53 DLGKMDE--ANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILSEG 187
            DLG + +     +GL  Y+       D S+SWKD++W++     P++ +G
Sbjct:  203 DLGNISKYLGKPTGLEDYIGWLGSNFDPSISWKDLEWIREFWDGPMVIKG 252

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_ACIB3 (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain AB307-0294) GN=lldD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.519e-16
Identity = 41/112 (36.61%), Postives = 65/112 (58.04%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHMHNRKYHLPTDL 515
            +KG+L P+DA+ A    A GI+VSNHG RQLD V ++  AL  +  A  G + +L D G++ G DV + LA  A  + +GR   Y+L +AG   +  +L + +++  +   L
Sbjct:  250 IKGILDPEDAKDAVRFGADGIVVSNHGGRQLDGVMSSARALPAIADAVKGDLAILADSGIRNGLDVVRMLALGADTVLLGRAFVYALAAAGGQGVSNLLDLIDKEMRVAMTL 361

HSP 2 Score: 30.0314 bits (66), Expect = 1.519e-16
Identity = 15/50 (30.00%), Postives = 27/50 (54.00%), Query Frame = 2

Query:   53 DLGKMDE--ANDSGLAAYVA---GQIDRSLSWKDVKWLQTITKLPILSEG 187
            DLG + +     +GL  Y+       D S+SWKD++W++     P++ +G
Sbjct:  203 DLGNISKYLGKPTGLEDYIGWLGSNFDPSISWKDLEWIREFWDGPMVIKG 252

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_KLEP7 (L-lactate dehydrogenase [cytochrome] OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=lldD PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.565e-16
Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHM 482
            +KG+L P+DAR A    A GI+VSNHG RQLD V ++  AL  +  A  G I +L D G++ G DV + +A  A  + +GR   Y+L + G   +  +L++
Sbjct:  250 IKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADSVLLGRAYLYALATHGKQGVANLLNL 350

HSP 2 Score: 30.8018 bits (68), Expect = 2.565e-16
Identity = 16/50 (32.00%), Postives = 27/50 (54.00%), Query Frame = 2

Query:   53 DLGKMDE--ANDSGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILSEG 187
            DLG +       +GL  Y+   A   D S+SWKD++W++     P++ +G
Sbjct:  203 DLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIRDFWDGPMVIKG 252

BLAST of EY734857 vs. ExPASy Swiss-Prot
Match: LLDD_KLEP3 (L-lactate dehydrogenase [cytochrome] OS=Klebsiella pneumoniae (strain 342) GN=lldD PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.565e-16
Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = 3

Query:  180 VKGVLTPQDARIA*SAEATGIIVSNHGPRQLDYVPATIMALEEVVKATHGRIPVLLDGGVKRGTDVFKTLAPEASDIFIGRPAAYSLTSAGHICLKTVLHM 482
            +KG+L P+DAR A    A GI+VSNHG RQLD V ++  AL  +  A  G I +L D G++ G DV + +A  A  + +GR   Y+L + G   +  +L++
Sbjct:  250 IKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADSVLLGRAYLYALATHGKQGVANLLNL 350

HSP 2 Score: 30.8018 bits (68), Expect = 2.565e-16
Identity = 16/50 (32.00%), Postives = 27/50 (54.00%), Query Frame = 2

Query:   53 DLGKMDE--ANDSGLAAYV---AGQIDRSLSWKDVKWLQTITKLPILSEG 187
            DLG +       +GL  Y+   A   D S+SWKD++W++     P++ +G
Sbjct:  203 DLGNISAYLGQPTGLEDYIGWLANNFDPSISWKDLEWIRDFWDGPMVIKG 252

The following BLAST results are available for this feature:

BLAST of EY734857 vs. ExPASy Swiss-Prot

BLAST of EY734857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125


Match Name	E-value	Identity	Description
LLDD_CAUSK	1.169e-16	46.15	L-lactate dehydrogenase [cytochrome] OS=Caulobacte...	[more]
LLDD_PSEU2	1.336e-16	41.18	L-lactate dehydrogenase [cytochrome] OS=Pseudomona...	[more]
LLDD_ACIBY	1.519e-16	36.61	L-lactate dehydrogenase [cytochrome] OS=Acinetobac...	[more]
LLDD_ACIBT	1.519e-16	36.61	L-lactate dehydrogenase [cytochrome] OS=Acinetobac...	[more]
LLDD_ACIBS	1.519e-16	36.61	L-lactate dehydrogenase [cytochrome] OS=Acinetobac...	[more]
LLDD_ACIBC	1.519e-16	36.61	L-lactate dehydrogenase [cytochrome] OS=Acinetobac...	[more]
LLDD_ACIB5	1.519e-16	36.61	L-lactate dehydrogenase [cytochrome] OS=Acinetobac...	[more]
LLDD_ACIB3	1.519e-16	36.61	L-lactate dehydrogenase [cytochrome] OS=Acinetobac...	[more]
LLDD_KLEP7	2.565e-16	39.60	L-lactate dehydrogenase [cytochrome] OS=Klebsiella...	[more]
LLDD_KLEP3	2.565e-16	39.60	L-lactate dehydrogenase [cytochrome] OS=Klebsiella...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-704-103-H12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY734857 ID=EY734857; Name=EY734857; organism=Citrus sinensis; type=EST; length=820bp
CCACGCGTCCGCTCTACCACCATTTTTGACATTAAAGAATTTTCATGGTT
TGGACCTTGGCAAGATGGACGAGGCAAATGACTCTGGGCTTGCTGCCTAT
GTTGCTGGTCAAATTGATCGTTCTCTGAGCTGGAAGGACGTGAAGTGGCT
TCAAACAATCACCAAATTGCCAATTCTGAGTGAAGGGTGTACTCACACCA
CAGGATGCGCGGATTGCATGATCGGCTGAAGCAACTGGCATTATTGTATC
CAATCATGGACCTCGTCAACTTGACTATGTCCCTGCCACTATCATGGCCC
TGGAAGAGGTTGTGAAAGCTACTCATGGGCGTATTCCTGTGCTCTTGGAT
GGTGGTGTTAAGCGAGGAACTGATGTCTTCAAAACATTGGCACCTGAAGC
CTCTGATATATTTATTGGACGACCAGCGGCGTACTCATTGACATCTGCCG
GACACATATGCCTAAAAACAGTACTCCACATGCATAACAGAAAATACCAT
CTACCCACGGATCTAAATATGCCATCAATGATCCAACCTAAAACTGCCAT
ATCACCTAACCTTGTGTACGCGCCACCATCTCCTCTCCACCCCCTGTCTT
CACACTGCAGGATACCGACATCTACCAAACCACTCAATCTCAACAATTCC
ATTAACCCACTCTGTACTAACATATACCGTGCAAGGCATCAAACATCCAT
TACATATGCACGCACCTATATGCCACCCTCCCCCCACCTACTCCACACAT
CTACCTACCTCCCGGCCAACATACCAGATACCGCAACCAACGCTATATTG
CCGCTCATACCAGCCACTCA