EY756593

Overview
NameEY756593
Unique NameEY756593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length508
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756593 vs. ExPASy Swiss-Prot
Match: H2BWT_HUMAN (Histone H2B type W-T OS=Homo sapiens GN=H2BFWT PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 3.753e-15
Identity = 39/77 (50.65%), Postives = 58/77 (75.32%), Query Frame = 2
Query:   14 VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 244
            VLKQVH  + +S +A+ +M+S ++DI +++A E+ RLAR  K+ TIT+ E + AVRL+LPG++ K A SEGTKAV +
Sbjct:   88 VLKQVHQGLSLSREAVSVMDSLVHDILDRIATEAGRLARSTKRQTITAWETRMAVRLLLPGQMGKLAESEGTKAVLR 164          
BLAST of EY756593 vs. ExPASy Swiss-Prot
Match: H2B_LILLO (Histone H2B.1 OS=Lilium longiflorum PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.863e-14
Identity = 39/75 (52.00%), Postives = 59/75 (78.67%), Query Frame = 2
Query:   14 VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAV 238
            VL QV P++GISSK+M IMN+F+   F+ +A+E+S LA+Y+KK TIT +E++ AV+LVLP +L ++A  +G +AV
Sbjct:   61 VLTQVRPELGISSKSMLIMNNFVVHNFQNIAKEASILAQYSKKKTITVKELKAAVKLVLPHQLLEYADRDGDRAV 135          
BLAST of EY756593 vs. ExPASy Swiss-Prot
Match: H2BV_BOVIN (Histone H2B subacrosomal variant OS=Bos taurus GN=SUBH2BV PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 7.825e-13
Identity = 36/81 (44.44%), Postives = 58/81 (71.60%), Query Frame = 2
Query:    2 HASEVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 244
            + + VLK+V P  GISS+ + I+N+ IND+FE+++ E+  L  Y K+ T+T  +I+ AV L+LP +LAK+AV+ G +AV +
Sbjct:   38 YINRVLKEVVPQKGISSRTIDIINTMINDMFERISTEACNLMYYRKRCTLTPEDIEKAVYLLLPEKLAKYAVAFGKEAVQR 118          
BLAST of EY756593 vs. ExPASy Swiss-Prot
Match: H2BV_MOUSE (Histone H2B subacrosomal variant OS=Mus musculus GN=Subh2bv PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.927e-11
Identity = 38/79 (48.10%), Postives = 55/79 (69.62%), Query Frame = 2
Query:    2 HASEVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAV 238
            + + VLK+V P+ GISS ++ IMN  INDIFE++A E+ +     K+ T+T  +IQ AV L+LP +LA  AV+ G+KAV
Sbjct:   39 YINRVLKEVVPNRGISSYSVDIMNILINDIFERIATEACQQMFLRKRCTLTPGDIQQAVHLLLPKKLATLAVTFGSKAV 117          
The following BLAST results are available for this feature:
BLAST of EY756593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2BWT_HUMAN3.753e-1550.65Histone H2B type W-T OS=Homo sapiens GN=H2BFWT PE=... [more]
H2B_LILLO1.863e-1452.00Histone H2B.1 OS=Lilium longiflorum PE=1 SV=1[more]
H2BV_BOVIN7.825e-1344.44Histone H2B subacrosomal variant OS=Bos taurus GN=... [more]
H2BV_MOUSE1.927e-1148.10Histone H2B subacrosomal variant OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-010-D04-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756593 ID=EY756593; Name=EY756593; organism=Citrus sinensis; type=EST; length=508bp
CCACGCGTCCGAGGTGCTGAAGCAGGTGCATCCTGATATAGGAATCTCCA
GCAAGGCCATGGGTATCATGAACAGCTTTATCAACGATATCTTCGAGAAA
TTGGCTCAGGAGTCGTCTCGTCTCGCGAGATACAACAAGAAGCCCACTAT
CACTTCTCGTGAGATCCAGACTGCTGTTAGACTTGTCTTGCCCGGTGAGC
TTGCCAAGCATGCCGTTTCTGAAGGCACCAAGGCTGTCACTAAGTTTACT
AGCTCTTAATGAACCTATAGCTTCAATAATTCAATTAGTATCTTCTCTTT
CTAGCTTGGGCTCTGCAATTTTTAAGGTCCTGTTTCTTTTATTTTCCTTT
TGGTTGTAGATTTTCTCTTTTGTTTACTTTTTGTATCTACCCTACCCAAC
AACCTAATCGAAGTTCTTTTTGCTCNNNNNNAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAANGG
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